Email l.a.kelley@imperial.ac.uk Description P19934 Date Thu Jan 5 11:37:42 GMT 2012 Unique Job ID 06f97779bad92f40

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1tolA_ 100.0 95 PDB header:viral protein Chain: A: PDB Molecule:protein (fusion protein consisting of minor coat PDBTitle: fusion of n-terminal domain of the minor coat protein from2 gene iii in phage m13, and c-terminal domain of e. coli3 protein-tola 2 d1tola2 99.9 100 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TolA 3 c2x9aB_ 99.9 100 PDB header:viral protein Chain: B: PDB Molecule:membrane spanning protein, required for outer membrane PDBTitle: crystal structure of g3p from phage if1 in complex with its2 coreceptor, the c-terminal domain of tola 4 d1lr0a_ 99.8 16 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TolA 5 d1ihra_ 97.7 9 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TonB 6 c2grxC_ 97.2 15 PDB header:metal transport Chain: C: PDB Molecule:protein tonb; PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome 7 c1xx3A_ 97.2 11 PDB header:transport protein Chain: A: PDB Molecule:tonb protein; PDBTitle: solution structure of escherichia coli tonb-ctd 8 d2gskb1 96.9 9 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TonB 9 c2k9kA_ 96.7 20 PDB header:metal transport Chain: A: PDB Molecule:tonb2; PDBTitle: molecular characterization of the tonb2 protein from vibrio2 anguillarum 10 d1u07a_ 96.6 9 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TonB 11 c2dzkA_ 54.3 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubx domain-containing protein 2; PDBTitle: structure of the ubx domain in mouse ubx domain-containing2 protein 2 12 c1y4cA_ 50.4 17 PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp 13 c2kxjA_ 47.2 22 PDB header:protein binding Chain: A: PDB Molecule:ubx domain-containing protein 4; PDBTitle: solution structure of ubx domain of human ubxd2 protein 14 d2ba0g2 41.0 16 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 15 d1r4xa2 38.4 16 Fold:Subdomain of clathrin and coatomer appendage domain Superfamily:Subdomain of clathrin and coatomer appendage domain Family:Coatomer appendage domain 16 d2e7ga1 35.4 11 Fold:Alpha-lytic protease prodomain-like Superfamily:Ribosome-binding factor A, RbfA Family:Ribosome-binding factor A, RbfA 17 c2ytxA_ 35.3 36 PDB header:rna binding protein Chain: A: PDB Molecule:cold shock domain-containing protein e1; PDBTitle: solution structure of the second cold-shock domain of the human2 kiaa0885 protein (unr protein) 18 d2nn6c2 35.1 19 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 19 c2zfdB_ 33.6 11 PDB header:signaling protein/transferase Chain: B: PDB Molecule:putative uncharacterized protein t20l15_90; PDBTitle: the crystal structure of plant specific calcium binding protein atcbl22 in complex with the regulatory domain of atcipk14 20 c1ybxA_ 32.0 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: conserved hypothetical protein cth-383 from clostridium thermocellum 21 d1wj4a_ not modelled 31.8 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 22 c2kzfA_ not modelled 31.0 11 PDB header:ribosomal protein Chain: A: PDB Molecule:ribosome-binding factor a; PDBTitle: solution nmr structure of the thermotoga maritima protein tm0855 a2 putative ribosome binding factor a 23 c1r4xA_ not modelled 29.0 14 PDB header:protein transport Chain: A: PDB Molecule:coatomer gamma subunit; PDBTitle: crystal structure analys of the gamma-copi appendage domain 24 d2nn6e2 not modelled 28.3 10 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 25 c2vbcA_ not modelled 27.8 11 PDB header:hydrolase Chain: A: PDB Molecule:dengue 4 ns3 full-length protein; PDBTitle: crystal structure of the ns3 protease-helicase from dengue2 virus 26 c1pzdA_ not modelled 25.4 13 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:coatomer gamma subunit; PDBTitle: structural identification of a conserved appendage domain2 in the carboxyl-terminus of the copi gamma-subunit. 27 c3mfbA_ not modelled 21.8 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the s-type pyocin domain of eca16692 protein from erwinia carotovora, northeast structural3 genomics consortium target ewr82c 28 c2dnrA_ not modelled 20.0 20 PDB header:rna binding protein Chain: A: PDB Molecule:synaptojanin-1; PDBTitle: solution structure of rna binding domain in synaptojanin 1 29 c2zv4O_ not modelled 19.7 10 PDB header:structural protein Chain: O: PDB Molecule:major vault protein; PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution 30 c3htyC_ not modelled 19.2 15 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein bt_0869; PDBTitle: crystal structure of hypothetical protein bt_0869 from bacteroides2 thetaiotaomicron vpi-5482 (np_809782.1) at 1.95 a resolution 31 c3mlpE_ not modelled 18.8 11 PDB header:transcription/dna Chain: E: PDB Molecule:transcription factor coe1; PDBTitle: early b-cell factor 1 (ebf1) bound to dna 32 c1dxzA_ not modelled 18.6 26 PDB header:transmembrane protein Chain: A: PDB Molecule:acetylcholine receptor protein, alpha chain; PDBTitle: m2 transmembrane segment of alpha-subunit of nicotinic2 acetylcholine receptor from torpedo californica, nmr, 203 structures 33 d1jbia_ not modelled 18.4 12 Fold:LCCL domain Superfamily:LCCL domain Family:LCCL domain 34 c2i1jA_ not modelled 17.4 17 PDB header:cell adhesion, membrane protein Chain: A: PDB Molecule:moesin; PDBTitle: moesin from spodoptera frugiperda at 2.1 angstroms resolution 35 d2dyja1 not modelled 16.5 19 Fold:Alpha-lytic protease prodomain-like Superfamily:Ribosome-binding factor A, RbfA Family:Ribosome-binding factor A, RbfA 36 c3ol0C_ not modelled 16.3 17 PDB header:de novo protein Chain: C: PDB Molecule:de novo designed monomer trefoil-fold sub-domain which PDBTitle: crystal structure of monofoil-4p homo-trimer: de novo designed monomer2 trefoil-fold sub-domain which forms homo-trimer assembly 37 d2nn6a2 not modelled 15.4 25 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 38 c2kncB_ not modelled 15.1 11 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 39 d2cjoa_ not modelled 15.0 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 40 d1wg1a_ not modelled 14.0 33 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 41 d1kkga_ not modelled 14.0 12 Fold:Alpha-lytic protease prodomain-like Superfamily:Ribosome-binding factor A, RbfA Family:Ribosome-binding factor A, RbfA 42 d1j8ba_ not modelled 13.4 10 Fold:YbaB-like Superfamily:YbaB-like Family:YbaB-like 43 d2je6a2 not modelled 12.8 20 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 44 d1s48a_ not modelled 11.7 22 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase 45 c2rmzA_ not modelled 11.4 11 PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-3; PDBTitle: bicelle-embedded integrin beta3 transmembrane segment 46 d1kyfa2 not modelled 11.3 12 Fold:Subdomain of clathrin and coatomer appendage domain Superfamily:Subdomain of clathrin and coatomer appendage domain Family:Clathrin adaptor appendage, alpha and beta chain-specific domain 47 c3pn1A_ not modelled 11.2 20 PDB header:ligase/ligase inhibitor Chain: A: PDB Molecule:dna ligase; PDBTitle: novel bacterial nad+-dependent dna ligase inhibitors with broad2 spectrum potency and antibacterial efficacy in vivo 48 d2ux9a1 not modelled 11.1 23 Fold:Dodecin subunit-like Superfamily:Dodecin-like Family:Dodecin-like 49 c1sfeA_ not modelled 10.9 21 PDB header:dna-binding protein Chain: A: PDB Molecule:ada o6-methylguanine-dna methyltransferase; PDBTitle: ada o6-methylguanine-dna methyltransferase from escherichia coli 50 c1x65A_ not modelled 10.7 22 PDB header:rna binding protein Chain: A: PDB Molecule:unr protein; PDBTitle: solution structure of the third cold-shock domain of the human2 kiaa0885 protein (unr protein) 51 d2k8ea1 not modelled 10.4 14 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 52 d1x6oa2 not modelled 10.2 27 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 53 d1nkza_ not modelled 9.7 15 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 54 c3ecyA_ not modelled 9.6 19 PDB header:hydrolase Chain: A: PDB Molecule:cg4584-pa, isoform a (bcdna.ld08534); PDBTitle: crystal structural analysis of drosophila melanogaster dutpase 55 d1sfea1 not modelled 9.6 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain 56 d2cr5a1 not modelled 9.5 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 57 d1tl2a_ not modelled 9.5 14 Fold:5-bladed beta-propeller Superfamily:Tachylectin-2 Family:Tachylectin-2 58 c3ajbB_ not modelled 9.1 42 PDB header:protein transport Chain: B: PDB Molecule:peroxisomal biogenesis factor 19; PDBTitle: crystal structure of human pex3p in complex with n-terminal pex19p2 peptide 59 d1h8ca_ not modelled 9.0 27 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 60 c1cu1B_ not modelled 9.0 28 PDB header:hydrolase Chain: B: PDB Molecule:protein (protease/helicase ns3); PDBTitle: crystal structure of an enzyme complex from hepatitis c2 virus 61 d1pa4a_ not modelled 9.0 10 Fold:Alpha-lytic protease prodomain-like Superfamily:Ribosome-binding factor A, RbfA Family:Ribosome-binding factor A, RbfA 62 c1ky6A_ not modelled 8.9 12 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:alpha-adaptin c; PDBTitle: ap-2 clathrin adaptor alpha-appendage in complex with epsin2 dpw peptide 63 d1puga_ not modelled 8.9 3 Fold:YbaB-like Superfamily:YbaB-like Family:YbaB-like 64 d1v9pa3 not modelled 8.8 15 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 65 d1ccwb_ not modelled 8.7 18 Fold:TIM beta/alpha-barrel Superfamily:Cobalamin (vitamin B12)-dependent enzymes Family:Glutamate mutase, large subunit 66 c3onrI_ not modelled 8.7 20 PDB header:metal binding protein Chain: I: PDB Molecule:protein transport protein sece2; PDBTitle: crystal structure of the calcium chelating immunodominant antigen,2 calcium dodecin (rv0379),from mycobacterium tuberculosis with a novel3 calcium-binding site 67 d1n1ba1 not modelled 8.6 23 Fold:alpha/alpha toroid Superfamily:Terpenoid cyclases/Protein prenyltransferases Family:Terpenoid cyclase N-terminal domain 68 c2zsjB_ not modelled 8.6 10 PDB header:lyase Chain: B: PDB Molecule:threonine synthase; PDBTitle: crystal structure of threonine synthase from aquifex aeolicus vf5 69 d1i42a_ not modelled 8.5 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 70 c2k59B_ not modelled 8.5 33 PDB header:transport protein Chain: B: PDB Molecule:neuronal acetylcholine receptor subunit beta-2; PDBTitle: nmr structures of the second transmembrane domain of the2 neuronal acetylcholine receptor beta 2 subunit 71 d3bzka5 not modelled 8.5 21 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Tex RuvX-like domain-like 72 d1ta8a_ not modelled 8.3 22 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 73 c3p2oB_ not modelled 8.3 11 PDB header:oxidoreductase, hydrolase Chain: B: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of fold bifunctional protein from campylobacter2 jejuni 74 c2jpxA_ not modelled 8.2 14 PDB header:viral protein Chain: A: PDB Molecule:vpu protein; PDBTitle: a18h vpu tm structure in lipid bilayers 75 c2l7qA_ not modelled 8.2 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein found in conjugate transposon; PDBTitle: solution nmr structure of conjugate transposon protein bvu_1572(27-2 141) from bacteroides vulgatus, northeast structural genomics3 consortium target bvr155 76 c1zbtA_ not modelled 8.0 16 PDB header:translation Chain: A: PDB Molecule:peptide chain release factor 1; PDBTitle: crystal structure of peptide chain release factor 1 (rf-1) (smu.1085)2 from streptococcus mutans at 2.34 a resolution 77 c1s1hJ_ not modelled 8.0 13 PDB header:ribosome Chain: J: PDB Molecule:40s ribosomal protein s20; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 78 c2kncA_ not modelled 8.0 10 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 79 d1ijda_ not modelled 7.9 15 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 80 c2ihr1_ not modelled 7.9 12 PDB header:translation Chain: 1: PDB Molecule:peptide chain release factor 2; PDBTitle: rf2 of thermus thermophilus 81 d1j3wa_ not modelled 7.9 22 Fold:Profilin-like Superfamily:Roadblock/LC7 domain Family:Roadblock/LC7 domain 82 c3p2oA_ not modelled 7.8 11 PDB header:oxidoreductase, hydrolase Chain: A: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of fold bifunctional protein from campylobacter2 jejuni 83 c3muxB_ not modelled 7.6 21 PDB header:lyase Chain: B: PDB Molecule:putative 4-hydroxy-2-oxoglutarate aldolase; PDBTitle: the crystal structure of a putative 4-hydroxy-2-oxoglutarate aldolase2 from bacillus anthracis to 1.45a 84 d1oysa1 not modelled 7.6 15 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 85 c2l3bA_ not modelled 7.5 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein found in conjugate transposon; PDBTitle: solution nmr structure of the bt_0084 lipoprotein from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr376 86 c3oqtP_ not modelled 7.4 16 PDB header:flavoprotein Chain: P: PDB Molecule:rv1498a protein; PDBTitle: crystal structure of rv1498a protein from mycobacterium tuberculosis 87 c2y69R_ not modelled 7.3 33 PDB header:electron transport Chain: R: PDB Molecule:cytochrome c oxidase subunit 5a; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 88 d1v54e_ not modelled 7.3 33 Fold:alpha-alpha superhelix Superfamily:Cytochrome c oxidase subunit E Family:Cytochrome c oxidase subunit E 89 c1a4iB_ not modelled 7.1 17 PDB header:oxidoreductase Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase / PDBTitle: human tetrahydrofolate dehydrogenase / cyclohydrolase 90 d1vk8a_ not modelled 7.1 18 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 91 d1dxwa_ not modelled 7.1 31 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 92 d1b04a_ not modelled 7.1 15 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 93 c1a11A_ not modelled 7.0 30 PDB header:acetylcholine receptor Chain: A: PDB Molecule:acetylcholine receptor m2; PDBTitle: nmr structure of membrane spanning segment 2 of the2 acetylcholine receptor in dpc micelles, 10 structures 94 c1yq3C_ not modelled 7.0 29 PDB header:oxidoreductase Chain: C: PDB Molecule:succinate dehydrogenase cytochrome b, large subunit; PDBTitle: avian respiratory complex ii with oxaloacetate and ubiquinone 95 c1eq8B_ not modelled 7.0 30 PDB header:signaling protein Chain: B: PDB Molecule:acetylcholine receptor protein; PDBTitle: three-dimensional structure of the pentameric helical2 bundle of the acetylcholine receptor m2 transmembrane3 segment 96 c1eq8D_ not modelled 7.0 30 PDB header:signaling protein Chain: D: PDB Molecule:acetylcholine receptor protein; PDBTitle: three-dimensional structure of the pentameric helical2 bundle of the acetylcholine receptor m2 transmembrane3 segment 97 c1eq8C_ not modelled 7.0 30 PDB header:signaling protein Chain: C: PDB Molecule:acetylcholine receptor protein; PDBTitle: three-dimensional structure of the pentameric helical2 bundle of the acetylcholine receptor m2 transmembrane3 segment 98 c1eq8E_ not modelled 7.0 30 PDB header:signaling protein Chain: E: PDB Molecule:acetylcholine receptor protein; PDBTitle: three-dimensional structure of the pentameric helical2 bundle of the acetylcholine receptor m2 transmembrane3 segment 99 c1eq8A_ not modelled 7.0 30 PDB header:signaling protein Chain: A: PDB Molecule:acetylcholine receptor protein; PDBTitle: three-dimensional structure of the pentameric helical2 bundle of the acetylcholine receptor m2 transmembrane3 segment