Email l.a.kelley@imperial.ac.uk Description P76161 Date Thu Jan 5 12:19:56 GMT 2012 Unique Job ID 03908fb7538dd54f

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1nltA_ 99.9 19 PDB header:protein transport Chain: A: PDB Molecule:mitochondrial protein import protein mas5; PDBTitle: the crystal structure of hsp40 ydj1 2 c2cttA_ 99.7 22 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily a member 3; PDBTitle: solution structure of zinc finger domain from human dnaj2 subfamily a menber 3 3 d1exka_ 99.4 24 Fold:DnaJ/Hsp40 cysteine-rich domain Superfamily:DnaJ/Hsp40 cysteine-rich domain Family:DnaJ/Hsp40 cysteine-rich domain 4 d1nlta3 99.3 22 Fold:DnaJ/Hsp40 cysteine-rich domain Superfamily:DnaJ/Hsp40 cysteine-rich domain Family:DnaJ/Hsp40 cysteine-rich domain 5 c2q2gA_ 98.0 9 PDB header:chaperone Chain: A: PDB Molecule:heat shock 40 kda protein, putative (fragment); PDBTitle: crystal structure of dimerization domain of hsp40 from2 cryptosporidium parvum, cgd2_1800 6 c3lz8A_ 97.7 10 PDB header:chaperone Chain: A: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone dnaj from klebsiella pneumoniae2 subsp. pneumoniae mgh 78578 at 2.9 a resolution. 7 c2qldA_ 97.6 15 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 1; PDBTitle: human hsp40 hdj1 8 c3ld0Q_ 97.1 37 PDB header:gene regulation Chain: Q: PDB Molecule:inhibitor of trap, regulated by t-box (trp) sequence rtpa; PDBTitle: crystal structure of b.licheniformis anti-trap protein, an antagonist2 of trap-rna interactions 9 c2k3vA_ 96.8 16 PDB header:electron transport Chain: A: PDB Molecule:tetraheme cytochrome c-type; PDBTitle: solution structure of a tetrahaem cytochrome from2 shewanella frigidimarina 10 c2bx9J_ 94.9 41 PDB header:transcription regulation Chain: J: PDB Molecule:tryptophan rna-binding attenuator protein-inhibitory PDBTitle: crystal structure of b.subtilis anti-trap protein, an2 antagonist of trap-rna interactions 11 d2fiya1 86.7 14 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 12 c3apqB_ 86.2 19 PDB header:oxidoreductase Chain: B: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of j-trx1 fragment of erdj5 13 c2kdxA_ 81.0 19 PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein 14 c3pihA_ 80.0 37 PDB header:hydrolase/dna Chain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna 15 c1fpoA_ 78.0 15 PDB header:chaperone Chain: A: PDB Molecule:chaperone protein hscb; PDBTitle: hsc20 (hscb), a j-type co-chaperone from e. coli 16 c3hhoA_ 74.4 12 PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb homolog; PDBTitle: chaperone hscb from vibrio cholerae 17 c3bvoA_ 73.4 6 PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor; PDBTitle: crystal structure of human co-chaperone protein hscb 18 c2b26A_ 70.5 20 PDB header:chaperone/protein transport Chain: A: PDB Molecule:sis1 protein; PDBTitle: the crystal structure of the protein complex of yeast hsp402 sis1 and hsp70 ssa1 19 d1c3ga1 69.6 14 Fold:HSP40/DnaJ peptide-binding domain Superfamily:HSP40/DnaJ peptide-binding domain Family:HSP40/DnaJ peptide-binding domain 20 d1gh6a_ 69.4 14 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 21 c2cugA_ not modelled 64.3 9 PDB header:chaperone Chain: A: PDB Molecule:mkiaa0962 protein; PDBTitle: solution structure of the j domain of the pseudo dnaj2 protein, mouse hypothetical mkiaa0962 22 c2l6lA_ not modelled 62.7 9 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 24; PDBTitle: solution structure of human j-protein co-chaperone, dph4 23 d1hdja_ not modelled 62.5 11 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 24 c2ctqA_ 60.7 15 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 12; PDBTitle: solution structure of j-domain from human dnaj subfamily c2 menber 12 25 c1bq0A_ not modelled 57.9 17 PDB header:chaperone Chain: A: PDB Molecule:dnaj; PDBTitle: j-domain (residues 1-77) of the escherichia coli n-terminal2 fragment (residues 1-104) of the molecular chaperone dnaj,3 nmr, 20 structures 26 c2o37A_ not modelled 54.9 15 PDB header:chaperone Chain: A: PDB Molecule:protein sis1; PDBTitle: j-domain of sis1 protein, hsp40 co-chaperone from2 saccharomyces cerevisiae. 27 c2ctrA_ not modelled 53.7 21 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 9; PDBTitle: solution structure of j-domain from human dnaj subfamily b2 menber 9 28 c3a44D_ not modelled 52.8 14 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 29 c2ys8A_ not modelled 51.9 7 PDB header:protein binding Chain: A: PDB Molecule:rab-related gtp-binding protein rabj; PDBTitle: solution structure of the dnaj-like domain from human ras-2 associated protein rap1 30 d1p9ra_ not modelled 49.8 26 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 31 c3trzE_ not modelled 48.0 24 PDB header:rna binding protein/rna Chain: E: PDB Molecule:protein lin-28 homolog a; PDBTitle: mouse lin28a in complex with let-7d microrna pre-element 32 c2dn9A_ not modelled 47.0 13 PDB header:apoptosis, chaperone Chain: A: PDB Molecule:dnaj homolog subfamily a member 3; PDBTitle: solution structure of j-domain from the dnaj homolog, human2 tid1 protein 33 d1nz6a_ not modelled 45.6 6 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 34 c2yuaA_ not modelled 44.5 8 PDB header:chaperone Chain: A: PDB Molecule:williams-beuren syndrome chromosome region 18 PDBTitle: solution structure of the dnaj domain from human williams-2 beuren syndrome chromosome region 18 protein 35 c2kqxA_ not modelled 43.1 21 PDB header:chaperone binding protein Chain: A: PDB Molecule:curved dna-binding protein; PDBTitle: nmr structure of the j-domain (residues 2-72) in the2 escherichia coli cbpa 36 d1fpoa1 not modelled 40.7 24 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 37 c2qsaA_ not modelled 39.5 10 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog dnj-2; PDBTitle: crystal structure of j-domain of dnaj homolog dnj-2 precursor from2 c.elegans. 38 c2ctwA_ not modelled 38.1 21 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 5; PDBTitle: solution structure of j-domain from mouse dnaj subfamily c2 menber 5 39 d1iura_ not modelled 37.8 22 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 40 c2k2dA_ not modelled 37.8 29 PDB header:metal binding protein Chain: A: PDB Molecule:ring finger and chy zinc finger domain- PDBTitle: solution nmr structure of c-terminal domain of human pirh2.2 northeast structural genomics consortium (nesg) target ht2c 41 c2lgwA_ not modelled 36.9 12 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 2; PDBTitle: solution structure of the j domain of hsj1a 42 d1xbla_ not modelled 36.8 17 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 43 d1qypa_ not modelled 35.4 19 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 44 d1wjza_ not modelled 34.7 11 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 45 c2dmxA_ not modelled 33.2 10 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 8; PDBTitle: solution structure of the j domain of dnaj homolog2 subfamily b member 8 46 d1tfia_ not modelled 30.1 20 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 47 c2ctpA_ not modelled 29.0 13 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 12; PDBTitle: solution structure of j-domain from human dnaj subfamily b2 menber 12 48 c2jrpA_ not modelled 27.7 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86 49 c2jneA_ not modelled 26.7 14 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317. 50 d2jnea1 not modelled 26.7 14 Fold:Rubredoxin-like Superfamily:YfgJ-like Family:YfgJ-like 51 c2opfA_ not modelled 23.7 8 PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate 52 d1aafa_ not modelled 23.7 20 Fold:Retrovirus zinc finger-like domains Superfamily:Retrovirus zinc finger-like domains Family:Retrovirus zinc finger-like domains 53 d1zbdb_ not modelled 23.6 18 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 54 c1ee8A_ not modelled 23.4 24 PDB header:dna binding protein Chain: A: PDB Molecule:mutm (fpg) protein; PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8 55 c2ochA_ not modelled 22.1 11 PDB header:chaperone Chain: A: PDB Molecule:hypothetical protein dnj-12; PDBTitle: j-domain of dnj-12 from caenorhabditis elegans 56 d1fafa_ not modelled 20.4 13 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 57 d1twfi2 not modelled 20.0 19 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 58 d1ee8a3 not modelled 18.0 23 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 59 c2jvnA_ not modelled 17.7 25 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: domain c of human parp-1 60 c3hq7A_ not modelled 17.7 25 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: ccpa from g. sulfurreducens, g94k/k97q/r100i variant 61 c2riqA_ not modelled 17.2 25 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: crystal structure of the third zinc-binding domain of human parp-1 62 c1yuzB_ not modelled 16.7 23 PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin 63 c2qkdA_ not modelled 15.0 8 PDB header:signaling protein, cell cycle Chain: A: PDB Molecule:zinc finger protein zpr1; PDBTitle: crystal structure of tandem zpr1 domains 64 c2c4rL_ not modelled 14.9 16 PDB header:hydrolase Chain: L: PDB Molecule:ribonuclease e; PDBTitle: catalytic domain of e. coli rnase e 65 d1pfva3 not modelled 14.8 21 Fold:Rubredoxin-like Superfamily:Methionyl-tRNA synthetase (MetRS), Zn-domain Family:Methionyl-tRNA synthetase (MetRS), Zn-domain 66 c2cqfA_ not modelled 14.6 27 PDB header:transcription Chain: A: PDB Molecule:rna-binding protein lin-28; PDBTitle: solution structure of the zinc-finger domain in lin-28 67 d2k4xa1 not modelled 14.3 12 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27a 68 c2ihxA_ not modelled 14.1 23 PDB header:viral protein/rna Chain: A: PDB Molecule:nucleocapsid (nc) protein; PDBTitle: solution structure of the rous sarcoma virus nucleocapsid2 protein:upsi rna packaging signal complex 69 d1jlza_ not modelled 13.7 38 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Short-chain scorpion toxins 70 c1jlzA_ not modelled 13.7 38 PDB header:toxin Chain: A: PDB Molecule:tityustoxin alpha-ktx; PDBTitle: solution structure of a k+-channel blocker from the2 scorpion toxin of tityus cambridgei 71 d1hk8a_ not modelled 13.6 25 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 72 c1hk8A_ not modelled 13.6 25 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 73 d1k3xa3 not modelled 13.6 30 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 74 c3h0gI_ not modelled 13.2 17 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 75 c3gn5B_ not modelled 13.2 21 PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021) 76 c2gb5B_ not modelled 13.0 26 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 77 c3k7aM_ not modelled 12.9 15 PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex 78 c2c1uB_ not modelled 12.5 25 PDB header:oxidoreductase Chain: B: PDB Molecule:di-haem cytochrome c peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from paracoccus pantotrophus - oxidised form 79 c2e2zA_ not modelled 12.4 25 PDB header:protein transport, chaperone regulator Chain: A: PDB Molecule:tim15; PDBTitle: solution nmr structure of yeast tim15, co-chaperone of2 mitochondrial hsp70 80 d2cpga_ not modelled 12.2 19 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 81 c1i3qI_ not modelled 12.1 17 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution 82 c3cc4Z_ not modelled 11.7 28 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit 83 c2pf4E_ not modelled 11.5 11 PDB header:hydrolase regulator/viral protein Chain: E: PDB Molecule:small t antigen; PDBTitle: crystal structure of the full-length simian virus 40 small t antigen2 complexed with the protein phosphatase 2a aalpha subunit 84 d1wgea1 not modelled 11.4 11 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger 85 d2ey4e1 not modelled 11.4 21 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 86 d1pfta_ not modelled 11.2 15 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 87 c1y1yS_ not modelled 10.8 25 PDB header:transferase/transcription/dna-rna hybrid Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis-dna/rna complex 88 c1pqvS_ not modelled 10.6 25 PDB header:transferase/transcription Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis complex 89 c2li8A_ not modelled 10.5 23 PDB header:transcription/rna Chain: A: PDB Molecule:protein lin-28 homolog a; PDBTitle: the solution structure of the lin28-znf domains bound to aggagau of2 pre-let-7 mirna 90 d1nlta2 not modelled 10.1 17 Fold:HSP40/DnaJ peptide-binding domain Superfamily:HSP40/DnaJ peptide-binding domain Family:HSP40/DnaJ peptide-binding domain 91 c3nybB_ not modelled 10.0 20 PDB header:transferase/rna binding protein Chain: B: PDB Molecule:protein air2; PDBTitle: structure and function of the polymerase core of tramp, a rna2 surveillance complex 92 c1nmlA_ not modelled 9.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:di-haem cytochrome c peroxidase; PDBTitle: di-haemic cytochrome c peroxidase from pseudomonas nautica 617, form2 in (ph 4.0) 93 d2zjrz1 not modelled 9.5 24 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 94 d1iqca1 not modelled 9.1 24 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 95 c3o5cA_ not modelled 9.1 21 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: cytochrome c peroxidase bccp of shewanella oneidensis 96 d1ibia1 not modelled 8.9 26 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 97 d1nlta1 not modelled 8.4 15 Fold:HSP40/DnaJ peptide-binding domain Superfamily:HSP40/DnaJ peptide-binding domain Family:HSP40/DnaJ peptide-binding domain 98 d1nmla1 not modelled 8.4 19 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 99 d1dl6a_ not modelled 8.3 7 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain