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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2016 Aug 27

Fold library idPDB HeaderMoleculeTitle
c5cxmC_ 1.70 metal binding protein Chain: C: cytochrome b6/f complex iron-sulfur subunit;
c5k5sA_ 2.60 signaling protein Chain: A: extracellular calcium-sensing receptor;
c5jtiA_ 2.90 signaling protein Chain: A: tankyrase-1;
c5lj3P_ 3.80 splicing Chain: P: cwc15;
c5g3sB_ 2.08 oxidoreductase Chain: B: l-tryptophan oxidase vioa;
c5lj3M_ 3.80 splicing Chain: M: cwc2;
c5axlB_ 3.00 transferase Chain: B: trna(his)-5'-guanylyltransferase (thg1) like protein;
c5hywA_ 3.01 signaling protein/protein binding Chain: A: f-box/lrr-repeat max2 homolog;
c4y7sC_ 2.00 heme binding protein Chain: C: surface antigen protein 2;
c5ctdA_ 1.60 structural protein Chain: A: collagen alpha-1(i) chain,collagen alpha-1(ix) chain;
c5frhA_ UNK transcription Chain: A: anti-sigma factor rsra;
c5lj3N_ 3.80 splicing Chain: N: pre-mrna-splicing factor slt11;
c5ft1K_ 2.75 hydrolase/inhibitor Chain: K: gp37;
c5a8wI_ 1.80 transferase Chain: I: methyl-coenzyme m reductase ii;
c5hxwF_ 2.63 oxidoreductase Chain: F: l-amino acid deaminase;
c5lj3H_ 3.80 splicing Chain: H: cwc22;
c5cxsA_ 1.75 transferase Chain: A: purine nucleoside phosphorylase;
c5c6hF_ 2.05 apoptosis/apoptosis regulator Chain: F: mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
c5cx3G_ 2.30 protein binding Chain: G: fyve and coiled-coil domain-containing protein 1;
c5a7dL_ 3.40 cell cycle Chain: L: inscuteable;
c5lj3F_ 3.80 splicing Chain: F: pre-mrna-splicing factor cwc25;
c5jvpC_ 2.10 motor protein Chain: C: chimera protein of centromere-associated protein e and
c5lj3C_ 3.80 splicing Chain: C: pre-mrna-splicing factor snu114;
c5k0wA_ 2.61 hydrolase Chain: A: class b carbapenemase gob-18;
c5c6hP_ 2.05 apoptosis/apoptosis regulator Chain: P: mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
c5fogA_ 2.30 lyase Chain: A: leucyl-trna synthetase;
c5lj3G_ 3.80 splicing Chain: G: isy1;
c5ctdB_ 1.60 structural protein Chain: B: collagen alpha-2(i) chain,collagen alpha-2(ix) chain;
c5c6hN_ 2.05 apoptosis/apoptosis regulator Chain: N: mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
c5c6hD_ 2.05 apoptosis/apoptosis regulator Chain: D: mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
c5a8wH_ 1.80 transferase Chain: H: methyl-coenzyme m reductase ii;
c5aa6F_ 2.26 oxidoreductase Chain: F: vanadium-dependent bromoperoxidase 2;
c5lj3D_ 3.80 splicing Chain: D: protein cwc16;
c5czoC_ 2.89 transferase Chain: C: monopolin complex subunit mam1;
c5lj3R_ 3.80 splicing Chain: R: pre-mrna-splicing factor cwc21;
c5fd3A_ 2.42 transcription/dna Chain: A: protein lin-54 homolog;
c5kvkA_ 1.66 unknown function Chain: A: protein kp700603;
c5lj3O_ 3.80 splicing Chain: O: cef1;
c5l7jA_ 2.15 translation Chain: A: elp3 family;
c5jvsA_ 2.25 motor protein Chain: A: chimera protein of kinesin heavy chain and microtubule-
c5lisA_ 2.29 hydrolase Chain: A: insulin;
c5lj3W_ 3.80 splicing Chain: W: u2 small nuclear ribonucleoprotein a';
c5cx3F_ 2.30 protein binding Chain: F: fyve and coiled-coil domain-containing protein 1;
c5hiwA_ 1.85 oxidoreductase Chain: A: cytochrome p450 cyp260b1;
c5jhfA_ 3.21 protein transport Chain: A: klth0d11660p;
c5c6hL_ 2.05 apoptosis/apoptosis regulator Chain: L: mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
c5b7cA_ 2.35 structural protein Chain: A: s-crystallin octvus4;
c5c6hX_ 2.05 apoptosis/apoptosis regulator Chain: X: mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
c5lj3J_ 3.80 splicing Chain: J: prp46;
c5c6hJ_ 2.05 apoptosis/apoptosis regulator Chain: J: mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
c5ctiC_ 1.90 structural protein Chain: C: collagen alpha-1(i) chain,collagen alpha-3(ix) chain;
c5c6hV_ 2.05 apoptosis/apoptosis regulator Chain: V: mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
c5jvmA_ 1.57 motor protein Chain: A: chimera protein of kinesin-like protein kif3c and
c5lj3Y_ 3.80 splicing Chain: Y: u2 small nuclear ribonucleoprotein b'';
c5lj3T_ 3.80 splicing Chain: T: syf1;
c5czwA_ 1.60 hydrolase Chain: A: myroilysin;
c5czlA_ 2.39 hydrolase Chain: A: glucanase;
c5ibwC_ 1.90 motor protein Chain: C: myosin ic heavy chain;
c5a7dB_ 3.40 cell cycle Chain: B: pins;
c5c6hH_ 2.05 apoptosis/apoptosis regulator Chain: H: mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
c5c6hT_ 2.05 apoptosis/apoptosis regulator Chain: T: mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
c5cx3E_ 2.30 protein binding Chain: E: fyve and coiled-coil domain-containing protein 1;
c5l7sA_ 2.90 signaling protein Chain: A: secreted rxlr effector peptide protein;
c5b68A_ 1.70 transferase Chain: A: 4-alpha-glucanotransferase;
c5lj3S_ 3.80 splicing Chain: S: clf1;
c5lj3K_ 3.80 splicing Chain: K: pre-mrna-processing protein 45;
c5c6hB_ 2.05 apoptosis/apoptosis regulator Chain: B: mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
c5c6hR_ 2.05 apoptosis/apoptosis regulator Chain: R: mule bh3 peptide from e3 ubiquitin-protein ligase huwe1;
c5k83C_ 2.39 hydrolase Chain: C: apolipoprotein b mrna editing enzyme, catalytic peptide-
c5ddwD_ 2.30 transferase Chain: D: crmg;
c5ggoB_ 1.50 sugar binding protein Chain: B: protein o-linked-mannose beta-1,2-n-
c5fzpB_ 1.70 signaling protein Chain: B: dispase autolysis-inducing protein;
c5dplB_ 3.20 transferase Chain: B: protein lysine methyltransferase 2;
c5exkG_ 1.86 transferase Chain: G: lipoyl synthase;
c5do0A_ 2.60 transferase Chain: A: protein lysine methyltransferase 1;
c5lcyD_ 2.19 transcription Chain: D: frmr;
c5da5R_ 2.06 oxidoreductase Chain: R: rru_a0973;
c5dkuB_ 2.90 transferase Chain: B: prex dna polymerase;
c5joxA_ 1.80 hydrolase Chain: A: non-reducing end alpha-l-arabinofuranosidase bogh43a;
c5lcwN_ 4.00 cell cycle Chain: N: anaphase-promoting complex subunit 2;
c5d55A_ 2.00 cell adhesion Chain: A: hdab,hdaa (adhesin), hus-associated diffuse adherence;
c5jipB_ 1.80 hydrolase Chain: B: cortical-lytic enzyme;
c5d1xC_ 3.21 immune system Chain: C: p5 heavy chain;
c5jp0A_ 2.30 hydrolase Chain: A: beta-glucosidase bogh3b;
c5b6aA_ 2.00 transferase Chain: A: pyridoxal kinase pdxy;
c5cdlA_ 1.80 hydrolase Chain: A: proline dipeptidase;
c5hiuA_ 2.50 signaling protein Chain: A: gtpase activator-like protein;
c5lcwW_ 4.00 cell cycle Chain: W: anaphase-promoting complex subunit cdc26;
c5jouA_ 1.50 hydrolase Chain: A: alpha-xylosidase bogh31a;
c5jneA_ 2.85 ligase/signaling protein Chain: A: e3 sumo-protein ligase siz1,ubiquitin-like protein smt3;
c5k1sD_ 2.55 oxidoreductase Chain: D: oxidoreductase, zinc-binding dehydrogenase family;
c5ggfC_ 2.49 transferase, sugar binding protein Chain: C: protein o-linked-mannose beta-1,2-n-
c5i2cA_ 1.80 signaling protein Chain: A: gats-like protein 3;
c5fjvD_ 3.20 acetylcholine-binding protein Chain: D: neuronal acetylcholine receptor subunit alpha-2;
c5e1rC_ 2.65 allergen Chain: C: 7s vicilin;
c5kztB_ 1.85 peptide binding protein Chain: B: peptide/nickel transport system substrate-binding protein;
c5iazA_ UNK hydrolase Chain: A: beta-galactosidase 1;
c5d9gB_ 2.15 protein binding Chain: B: tip41-like protein;
c5dowH_ 1.70 calcium binding protein Chain: H: chloride anion exchanger;
c5l0lB_ 1.80 unknown function Chain: B: uncharacterized protein;
c5jozB_ 2.28 hydrolase Chain: B: non-reducing end alpha-l-arabinofuranosidase bogh43b;
c5a7mA_ 1.80 hydrolase Chain: A: beta-xylosidase;
c4zngA_ 2.25 hydrolase Chain: A: prolidase;
c5dilA_ 2.01 rna-binding protein, viral protein Chain: A: non-structural protein 1;
c5dowB_ 1.70 calcium binding protein Chain: B: chloride anion exchanger;
c5k57A_ UNK hydrolase Chain: A: protein ddi1 homolog 2;
c5k8kA_ 2.55 hydrolase Chain: A: udp-2,3-diacylglucosamine hydrolase;
c5g3aA_ 1.22 photosynthesis Chain: A: photosystem ii manganese-stabilizing polypeptide;
c5l1aA_ 2.40 unknown function Chain: A: uncharacterized protein;
c5d1vB_ 1.74 oxygen transport Chain: B: globin;
c5is5A_ 2.85 transferase Chain: A: phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic
c5klpC_ 2.00 transferase Chain: C: orf34;
c5ereA_ 2.00 signaling protein Chain: A: extracellular ligand-binding receptor;
c5dowD_ 1.70 calcium binding protein Chain: D: chloride anion exchanger;
c5cxpA_ 1.77 hydrolase Chain: A: possible xylan degradation enzyme (glycosyl hydrolase
c5dowF_ 1.70 calcium binding protein Chain: F: chloride anion exchanger;
c5jzrA_ UNK viral protein Chain: A: coat protein;
c2n3oA_ UNK rna binding protein/rna Chain: A: polypyrimidine tract-binding protein 1;
c5j7xA_ 1.90 oxidoreductase Chain: A: dimethylaniline monooxygenase, putative;
c5lcwS_ 4.00 cell cycle Chain: S: mitotic checkpoint serine/threonine-protein kinase bub1
c5kzmA_ 2.80 lyase Chain: A: tryptophan synthase alpha chain;
c5lcwG_ 4.00 cell cycle Chain: G: anaphase-promoting complex subunit cdc26;
c5ay6A_ 1.84 motor protein Chain: A: flagellar hook protein flge;
c5hs9A_ 2.10 dna binding protein Chain: A: hth-type transcriptional regulator yodb;
c5gjqP_ 4.50 hydrolase Chain: P: 26s proteasome non-atpase regulatory subunit 12;
c5k5xA_ 2.17 transferase Chain: A: platelet-derived growth factor receptor alpha;
c5dmxC_ 2.81 ligase Chain: C: d-alanine--d-alanine ligase;
c5cw2C_ 2.00 hydrolase Chain: C: putative epoxide hydrolase epha;
c5i5oA_ 2.68 viral protein Chain: A: matrix protein;
c5gmkq_ 3.40 rna binding protein/rna Chain: Q: pre-mrna-splicing factor slt11;
c5i5fA_ 1.84 membrane protein Chain: A: inner membrane protein yejm;
c5d74B_ 1.90 hydrolase Chain: B: putative phage lysin;
c5cuwA_ 1.89 membrane protein Chain: A: srte1;
c5gmkJ_ 3.40 rna binding protein/rna Chain: J: pre-mrna-splicing factor cwc21;
c5gmkS_ 3.40 rna binding protein/rna Chain: S: pre-mrna-splicing factor cwc15;
c4zcsE_ 2.45 transferase Chain: E: choline-phosphate cytidylyltransferase;
c5d9qD_ 4.40 immune system Chain: D: nih45-46 single chain fv;
c2n67B_ UNK toxin Chain: B: hemolysin ii;
c5gjqO_ 4.50 hydrolase Chain: O: 26s proteasome non-atpase regulatory subunit 13;
c2ncpA_ UNK metal binding protein Chain: A: 25 kda calcium-binding protein;
c5gjqY_ 4.50 hydrolase Chain: Y: 26s proteasome complex subunit dss1;
c5gmkc_ 3.40 rna binding protein/rna Chain: C: pre-mrna-splicing factor snu114;
c5dnvA_ 2.65 hydrolase Chain: A: shkai2ib;
c5gmkI_ 3.40 rna binding protein/rna Chain: I: pre-mrna-splicing factor syf2;
c5ix1A_ 2.60 transcription Chain: A: morc family cw-type zinc finger protein 3;
c5kkpA_ 2.26 isomerase Chain: A: pseudouridylate synthase 7;
c5sujB_ 2.36 unknown function Chain: B: uncharacterized protein;
c5edlA_ 1.95 transport protein Chain: A: putative hmp/thiamine permease protein ykoe;
c5kp0A_ UNK chaperone Chain: A: flagellar protein flit,flagellum-specific atp synthase;
c5colB_ 2.25 translation Chain: B: 50s ribosomal protein l11;
c5d7vD_ 2.33 transferase Chain: D: protein-tyrosine kinase 6;
c5d78A_ 1.25 rna binding protein Chain: A: rna-binding protein mip6;
c5gmkb_ 3.40 rna binding protein/rna Chain: B: 5'-exon;
c5kecD_ 1.95 dna binding protein Chain: D: flagellar brake protein ycgr;
c5sv9B_ 5.90 transport protein Chain: B: bor1p boron transporter;
c5l2rA_ 2.05 lyase Chain: A: fumarate hydratase;
c5gjqW_ 4.50 hydrolase Chain: W: 26s proteasome non-atpase regulatory subunit 4;
c5k7lA_ 3.78 metal transport/calcium binding protein Chain: A: potassium voltage-gated channel subfamily h member 1;
c5jpwB_ UNK motor protein Chain: B: dynein light chain tctex-type 1,cytoplasmic dynein 1
c5cu1A_ 2.30 lyase Chain: A: dmsp lyase;
c5eh1A_ 1.80 cytokine Chain: A: interferon gamma receptor 2;
c5gmkP_ 3.40 rna binding protein/rna Chain: P: pre-mrna-processing protein 45;
c5j1sA_ 1.40 hydrolase Chain: A: torsin-1a;
c5gjqS_ 4.50 hydrolase Chain: S: 26s proteasome non-atpase regulatory subunit 3;
c5kl1B_ 3.70 rna binding protein/rna Chain: B: protein nanos;
c5gmkd_ 3.40 rna binding protein/rna Chain: D: u5 snrna;
c5gmkt_ 3.40 rna binding protein/rna Chain: T: pre-mrna-splicing factor bud31;
c5gmkA_ 3.40 rna binding protein/rna Chain: A: pre-mrna-splicing factor 8;
c5j1sB_ 1.40 hydrolase Chain: B: torsin-1a-interacting protein 2;
c5gjqT_ 4.50 hydrolase Chain: T: 26s proteasome non-atpase regulatory subunit 8;
c5sv5A_ 1.00 hydrolase Chain: A: microbial collagenase;
c5gjqN_ 4.50 hydrolase Chain: N: 26s proteasome non-atpase regulatory subunit 1;
c5eykD_ 1.93 transferase Chain: D: inner centromere protein a;
c5gjqR_ 4.50 hydrolase Chain: R: 26s proteasome non-atpase regulatory subunit 6;
c5gjqU_ 4.50 hydrolase Chain: U: 26s proteasome non-atpase regulatory subunit 7;
c5gjqZ_ 4.50 hydrolase Chain: Z: 26s proteasome non-atpase regulatory subunit 2;
c5gmkn_ 3.40 rna binding protein/rna Chain: N: 5'-splicing site;
c5gjqQ_ 4.50 hydrolase Chain: Q: 26s proteasome non-atpase regulatory subunit 11;
c5gjqV_ 4.50 hydrolase Chain: V: 26s proteasome non-atpase regulatory subunit 14;
c5joeA_ 2.00 transferase Chain: A: titin;
c5gjqL_ 4.50 hydrolase Chain: L: 26s protease regulatory subunit 10b;
c5l1xH_ 3.30 viral protein Chain: H: hmpv f1 subunit;
c5szgB_ 2.70 endocytosis Chain: B: protein-methionine sulfoxide oxidase mical3;
c5sy1A_ 3.90 membrane protein/calcium binding protein Chain: A: stra6;
c5jtmE_ UNK chaperone/hydrolase Chain: E: alkaline phosphatase;
c5jtpH_ UNK chaperone/hydrolase Chain: H: alkaline phosphatase;
c5iroD_ 2.64 immune system/transcription Chain: D: e3 19 kda protein;
c5k3iH_ 2.68 oxidoreductase Chain: H: acyl-coenzyme a oxidase;
c5lo7B_ 1.90 cell adhesion Chain: B: fimbrial protein myfa,fimbrial protein myfa;
c5jtmH_ UNK chaperone/hydrolase Chain: H: alkaline phosphatase;
c5k47C_ 4.20 transport protein Chain: C: polycystin-2;
c5khrW_ 6.10 cell cycle Chain: W: anaphase-promoting complex subunit cdc26;
c5jzjB_ 1.71 transferase Chain: B: serine/threonine-protein kinase dclk1;
c5ikbA_ 2.05 membrane protein Chain: A: glutamate receptor ionotropic, kainate 4,glutamate receptor
c5sziB_ 2.85 endocytosis Chain: B: mical c-terminal-like protein;
c5jtoF_ UNK chaperone/hydrolase Chain: F: alkaline phosphatase;
c5iipA_ 2.50 transport protein Chain: A: glycine betaine/carnitine/choline abc transporter%2c atp-
c5aarA_ 1.87 transport protein Chain: A: potassium channel akt1;
c5lp7A_ 2.20 transferase Chain: A: acetyl-coa acetyltransferase;
c5e7pA_ 2.51 hydrolase Chain: A: cell division control protein cdc48;
c5lpnC_ 2.80 endocytosis Chain: C: ras-related protein rab-10;
c5dgkA_ 2.90 replication Chain: A: active helicase;
c5jldA_ 2.20 ligase Chain: A: arginyl-trna synthetase, putative;
c5dbnD_ 2.55 transferase Chain: D: acetate coa-transferase subunit beta;
c5i34B_ 1.53 ligase Chain: B: adenylosuccinate synthetase;
c5jtmF_ UNK chaperone/hydrolase Chain: F: alkaline phosphatase;
c5khrO_ 6.10 cell cycle Chain: O: anaphase-promoting complex subunit 5;
c5itsD_ 2.30 hydrolase Chain: D: cytokinin riboside 5'-monophosphate phosphoribohydrolase;
c5ljmA_ 1.45 cell cycle Chain: A: spermatogenesis-associated protein 2;
c5dmbA_ 2.30 translation Chain: A: flagellar assembly factor fliw;
c5k3jA_ 2.68 oxidoreductase Chain: A: acyl-coenzyme a oxidase;
c5ko9A_ 1.50 dna binding protein Chain: A: embryonic stem cell-specific 5-hydroxymethylcytosine-
c5dmbD_ 2.30 translation Chain: D: carbon storage regulator homolog;
c5dbqA_ 1.95 oxidoreductase Chain: A: thioredoxin;
c5k8rA_ 2.50 cell adhesion Chain: A: protocadherin gamma-b3;
c5k8qB_ 1.74 metal binding protein Chain: B: zgc:136689;
c5abrB_ 2.11 electron transport Chain: B: ferredoxin, 2fe-2s;
c5lpcA_ 3.10 oxidoreductase Chain: A: vanadium-dependent bromoperoxidase;
c5imyA_ 2.40 toxin/toxin receptor Chain: A: vaginolysin;
c5khrA_ 6.10 cell cycle Chain: A: anaphase-promoting complex subunit 1;
c5lpnB_ 2.80 endocytosis Chain: B: protein-methionine sulfoxide oxidase mical1;
c5gijB_ 3.00 signaling protein Chain: B: leucine-rich repeat receptor-like protein kinase tdr;
c5khrG_ 6.10 cell cycle Chain: G: anaphase-promoting complex subunit cdc26;
c5f1mA_ 2.32 hydrolase Chain: A: phosphorylated protein phosphatase;
c5jtmG_ UNK chaperone/hydrolase Chain: G: alkaline phosphatase;
c2n8eA_ UNK toxin Chain: A: kappa-conotoxin pviia;


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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