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 Protein Homology/analogY Recognition Engine V 2.0


New fold library entries added 2016 May 21

Fold library idPDB HeaderMoleculeTitle
c5a4gA_ UNK metal binding protein Chain: A: silb, silver efflux protein, mfp component of the three
c5iy72_ 8.60 transcription, transferase/dna Chain: 2: general transcription factor iih subunit 4;
c5j7oF_ 2.37 viral protein Chain: F: major capsid protein;
c5iy9M_ 6.30 transcription, transferase/dna/rna Chain: M: transcription initiation factor iib;
c5ic1A_ 2.20 peptide binding protein Chain: A: talin-1;
c5j92B_ 1.95 oxidoreductase Chain: B: putative alpha kg dependent 2,4-d dioxygenase;
c5ixmG_ 2.75 transport protein Chain: G: lps-assembly protein lptd;
c4zo9B_ 1.99 hydrolase Chain: B: lin1840 protein;
c5ha0A_ 1.44 transport protein Chain: A: lipocalin ai-4;
c5ixdB_ 2.85 cytokine Chain: B: interferon lambda receptor 1;
c5jd9A_ 1.63 structural protein Chain: A: spore coat protein h;
c5iy63_ 7.20 transcription, transferase/dna Chain: 3: general transcription factor iih subunit 3;
c5fa0B_ 2.30 transferase Chain: B: putative n-acetyl glucosaminyl transferase;
c5bz4K_ 2.43 transferase Chain: K: beta-ketothiolase;
c2n59A_ UNK unknown function Chain: A: putative uncharacterized protein csgh;
c5d0fB_ 3.30 sugar binding protein Chain: B: strain cbs138 chromosome g complete sequence;
c5cdiB_ 3.81 chaperone Chain: B: chaperonin 60b1;
c5fxuA_ 2.28 viral protein Chain: A: envelope polyprotein;
c5e5qB_ 1.60 antimicrobial protein Chain: B: snakin-1;
c5ivaB_ 2.99 transport protein Chain: B: lps-assembly lipoprotein lpte;
c5f3jD_ 4.00 immune system Chain: D: antibody 2d10 single chain variable fragment;
c5jlaB_ 1.45 isomerase Chain: B: putative short-chain dehydrogenase/reductase;
c5je8A_ 2.10 oxidoreductase Chain: A: 3-hydroxyisobutyrate dehydrogenase;
c5b1wC_ 3.05 carbohydrate binding protein Chain: C: c-type lectin domain family 4 member a;
c5injA_ 1.40 transferase Chain: A: prenyltransferase;
c5iycU_ 3.90 transcription, transferase/dna Chain: U: transcription elongation factor a protein 1;
c5f5wC_ 2.81 ligase Chain: C: glycine--trna ligase alpha subunit;
c5iy8R_ 7.90 transcription, transferase/dna Chain: R: transcription initiation factor iie subunit beta;
c4zryA_ 3.30 protein fibril Chain: A: keratin, type i cytoskeletal 10;
c5iydN_ 3.90 transcription, transferase/dna/rna Chain: N: transcription initiation factor iia subunit 1;
c4rudA_ 1.95 toxin Chain: A: three-finger toxin 3b;
c5fjsB_ 2.60 hydrolase Chain: B: glucosylceramidase;
c2n7gA_ UNK membrane protein Chain: A: potassium voltage-gated channel subfamily h member 2;
c5jifA_ 2.00 viral protein Chain: A: hemagglutinin-esterase;
c5jc8C_ 1.45 oxidoreductase Chain: C: putative short-chain dehydrogenase/reductase;
c5iy9Q_ 6.30 transcription, transferase/dna/rna Chain: Q: general transcription factor iie subunit 1;
c5iy70_ 8.60 transcription, transferase/dna Chain: 0: general transcription factor iih subunit 2;
c5erlD_ 2.85 isomerase Chain: D: snon,snon;
c2n4oA_ UNK structural protein Chain: A: hydrophobin-like protein mpg1;
c5i90A_ 1.22 transferase Chain: A: pvdn;
c5jn6A_ UNK unknown function Chain: A: uncharacterized protein;
c4zqyB_ 2.95 toxin Chain: B: ringhalexin;
c5iyaT_ 5.40 transcription, transferase/dna Chain: T: general transcription factor iif subunit 2;
c5da7B_ 2.80 dna binding protein/inhibitor Chain: B: thermococcales inhibitor of pcna;
c5ezdB_ 2.10 hydrolase Chain: B: kunitz-type protease inhibitor 1;
c5hwrA_ 1.50 transferase Chain: A: hydroxymethylglutaryl-coa synthase;
c5fc9D_ 1.60 metal binding protein Chain: D: blue (type 1) copper domain protein;
c2nawA_ UNK toxin Chain: A: exendin-4, alpha/kappa-conotoxin pl14a chimera;
c5eccA_ 1.87 oxidoreductase/oxidoreductase inhibitor Chain: A: dehydrofolate reductase type i;
c5fz5M_ 8.80 transcription Chain: M: transcription initiation factor iib;
c5fywR_ 4.35 transcription Chain: R: transcription initiation factor iif subunit beta;
c5fokA_ 1.90 metal transport Chain: A: iron transport outer membrane receptor;
c5fr8A_ 2.83 transport protein Chain: A: tonb-dependent siderophore receptor;
c5ii0A_ 2.10 hormone Chain: A: calcitonin receptor;
c4rt6A_ 2.80 protein binding Chain: A: heme/hemopexin-binding protein;
c4rudB_ 1.95 toxin Chain: B: three-finger toxin 3b;
c5ip4B_ 1.81 transferase Chain: B: xa4551 nanobody against c-dcx;
c5e92A_ 2.08 transferase/transferase inhibitor Chain: A: tgf-beta receptor type-2;
c5jqcA_ 2.15 hydrolase Chain: A: lmo1076 protein;
c5do7A_ 3.93 transport protein Chain: A: atp-binding cassette sub-family g member 5;
c5hkeB_ 1.90 hydrolase Chain: B: bile salt hydrolase;
c5ivwV_ 10.00 transcription/dna Chain: V: tfiih basal transcription factor complex helicase xpb
c5fywW_ 4.35 transcription Chain: W: transcription initiation factor iie subunit alpha;
c4rm6A_ 1.60 protein binding Chain: A: heme/hemopexin-binding protein;
c5bqsA_ 1.90 transferase/transferase inhibitor Chain: A: 3-oxoacyl-[acyl-carrier-protein] synthase 3;
c5j8yC_ 1.98 nuclear protein Chain: C: polycomb protein sfmbt;
c5fxyH_ 3.20 transcription Chain: H: metastasis-associated protein mta1;
c5ip4E_ 1.81 transferase Chain: E: neuronal migration protein doublecortin;
c5chhA_ 1.85 transcription Chain: A: arac family transcriptional regulator;
c5eqnA_ 2.30 hydrolase Chain: A: frbj;
c5iy8W_ 7.90 transcription, transferase/dna Chain: W: tfiih basal transcription factor complex helicase xpd
c5j3tC_ 1.60 hydrolase Chain: C: edc1;
c2n4xA_ UNK membrane protein Chain: A: cytochrome c-type biogenesis protein (ccda);
c5ferD_ 2.34 ligase Chain: D: e3 ubiquitin/isg15 ligase trim25;
c5epaE_ 2.24 lyase Chain: E: snok;
c5ixiA_ 2.57 cytokine Chain: A: tyrosine-protein kinase jak1;
c5ixmH_ 2.75 transport protein Chain: H: lps-assembly lipoprotein lpte;
c5hz7A_ 1.43 dna binding protein Chain: A: comp;
c5g2xC_ 3.80 transferase Chain: C: group ii intron-encoded protein ltra;
c5fp1A_ 1.94 metal transport Chain: A: tonb-dependent siderophore receptor;
c5e6gA_ 2.09 de novo protein Chain: A: de novo designed protein ca01;
c4rq9A_ 2.50 signaling protein Chain: A: photoreceptor-histidine kinase bphp;
c5cehA_ 3.14 oxidoreductase/inhibitor Chain: A: lysine-specific demethylase 5a;
c5do7B_ 3.93 transport protein Chain: B: atp-binding cassette sub-family g member 8;
c2n7iA_ UNK hormone receptor Chain: A: prolactin receptor;
c4ypvA_ 1.85 hydrolase Chain: A: est8;
c2n51A_ UNK translation Chain: A: elongation factor 1-delta;
c5c9sB_ 2.70 gene regulation Chain: B: rrna biogenesis protein rrp5;
c2n94A_ UNK metal binding protein Chain: A: box c/d snorna protein 1;
c2n95A_ UNK metal binding protein Chain: A: protein hit1;
c2nbaA_ UNK dna binding protein Chain: A: prepilin-type cleavage/methylation n-terminal domain
c5aweA_ 2.45 structural genomics, unknown function Chain: A: putative acetoin utilization protein, acetoin
c5hsbA_ 2.40 transcription Chain: A: rna polymerase;
c5ivaA_ 2.99 transport protein Chain: A: lps-assembly protein lptd;
c5ixiB_ 2.57 cytokine Chain: B: chimera protein of interferon lambda receptor 1 and
c3jd6O_ 4.10 cell adhesion Chain: O: retinoschisin;

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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