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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Dec 12

Fold library idPDB HeaderMoleculeTitle
c5cerD_ immune system Chain: D: bd3460; bd0816 predatory endopeptidase from bdellovibrio bacteriovorus in2 complex with immunity protein bd3460
c5aoaA_ hydrolase Chain: A: esterase; the structure of a novel thermophilic esterase from the2 planctomycetes species, thermogutta terrifontis, est2-3 propionate bound
c5cg0B_ hydrolase Chain: B: beta-glucosidase; crystal structure of spodoptera frugiperda beta-glycosidase
c5ca5A_ rna binding protein Chain: A: nono-1; structure of the c. elegans nono-1 homodimer
c5bwaA_ lyase/lyase inhibitor Chain: A: ornithine decarboxylase; crystal structure of odc-plp-az1 ternary complex
c5cxkG_ lyase Chain: G: carbonic anhydrase; crystal structure of beta carbonic anhydrase from vibrio cholerae
c4x5lB_ cell adhesion Chain: B: down syndrome cell adhesion molecule, isoform am; crystal structure of dscam1 ig7 domain, isoform 9
c4p5aB_ transferase Chain: B: thymidylate synthase thyx; crystal structure of a ump/dump methylase polb from streptomyces2 cacaoi bound with 5-br ump
c5cerI_ immune system Chain: I: bd0816; bd0816 predatory endopeptidase from bdellovibrio bacteriovorus in2 complex with immunity protein bd3460
c5d6oB_ transferase Chain: B: homoserine o-acetyltransferase; orthorhombic crystal structure of an acetylester hydrolase from2 corynebacterium glutamicum
c3jbxB_ recombination/dna Chain: B: v(d)j recombination-activating protein 2; cryo-electron microscopy structure of rag signal end complex (c22 symmetry)
c4rm9A_ peptide binding protein Chain: A: ezrin; crystal structure of human ezrin in space group c2221
c5fp2A_ metal transport Chain: A: ferric enterobactin receptor pira; crystal structure of the siderophore receptor pira from2 pseudomonas aeruginosa
c5d0kI_ ligase Chain: I: ring finger protein 165; structure of ube2d2:rnf165:ub complex
c5ez3B_ oxidoreductase Chain: B: acyl-coa dehydrogenase; crystal structure acyl-coa dehydrogenase from brucella melitensis in2 complex with fad
c5e6tA_ viral protein Chain: A: capsid; crystal structure of bovine norovirus p domain
c5douC_ ligase Chain: C: carbamoyl-phosphate synthase [ammonia], mitochondrial; crystal structure of human carbamoyl phosphate synthetase i (cps1),2 ligand-bound form
c4d7xA_ transcription Chain: A: mediator of rna polymerase ii transcription subunit 15; solution structure of the mediator gall11 kix domain of c.2 glabrata
c5dotA_ ligase Chain: A: carbamoyl-phosphate synthase [ammonia], mitochondrial; crystal structure of human carbamoyl phosphate synthetase i (cps1),2 apo form
c5aa7A_ hydrolase Chain: A: chitinase; structural and functional characterization of a chitin-2 active 15.5 kda lytic polysaccharide monooxygenase domain3 from a modular chitinase from jonesia denitrificans
c5c4nD_ oxidoreductase Chain: D: precorrin-6a reductase; cobk precorrin-6a reductase
c2n50A_ biosynthetic protein Chain: A: acyl carrier protein; novel structural components contribute to the high thermal stability2 of acyl carrier protein from enterococcus faecalis
c2mupA_ neuropeptide Chain: A: secreted ly-6/upar-related protein 1; structure of the cis-(tyr39-pro40) form of the human secreted ly-2 6/upar related protein-1 (slurp-1)
c4ztxA_ transferase Chain: A: cobalamin-independent methionine synthase; neurospora crassa cobalamin-independent methionine synthase complexed2 with zn2+
c5ewqC_ hydrolase Chain: C: amidase; the crystal structure of an amidase family protein from bacillus2 anthracis str. ames
c4uwqK_ hydrolase Chain: K: soxy protein; crystal structure of the disulfide-linked complex of the2 thiosulfodyrolase soxb with the carrier-protein soxyz from3 thermus thermophilus
c4yo2A_ transcription Chain: A: transcription factor e2f8; structure of e2f8, an atypical member of e2f family of transcription2 factors
c4zm6A_ hydrolase, transferase Chain: A: n-acetyl-beta-d glucosaminidase; a unique gcn5-related glucosamine n-acetyltransferase region exist in2 the fungal multi-domain gh3 beta-n-acetylglucosaminidase
c5a24A_ hydrolase Chain: A: dionain-1; crystal structure of dionain-1, the major endopeptidase in2 the venus flytrap digestive juice
c5elhB_ rna binding protein/rna Chain: B: ring finger protein unkempt homolog; crystal structure of mouse unkempt zinc fingers 1-3 (znf1-3), bound to2 rna
c2mx0A_ unknown function Chain: A: uncharacterized protein hp_0268; solution structure of hp0268 from helicobacter pylori
c5dgrB_ hydrolase Chain: B: putative endoglucanase-related protein; crystal structure of gh9 exo-beta-d-glucosaminidase pbpra0520,2 glucosamine complex
c2myhA_ toxin Chain: A: omega-tbo-it1 toxin; omega-tbo-it1: selective inhibitor of insect calcium channels isolated2 from tibellus oblongus spider venom
c4txwA_ carbohydrate-binding module Chain: A: hyaluronoglucosaminidase; crystal structure of cbm32-4 from the clostridium perfringens nagh
c4wzfA_ hydrolase activator Chain: A: 1,3-beta-glucanase; crystal structural basis for rv0315, an immunostimulatory antigen and2 pseudo beta-1, 3-glucanase of mycobacterium tuberculosis
c5eqzA_ transcription Chain: A: rev protein; crystal structure of a rev protein from borrelia burgdorferi at 1.80 a2 resolution
c4ruvA_ oxidoreductase Chain: A: thioredoxin; crystal structure of thioredoxin 2 from staphylococcus aureus nctc8325
c5c3uA_ lyase Chain: A: l-serine ammonia-lyase; crystal structure of a fungal l-serine ammonia-lyase from rhizomucor2 miehei
c2mwcA_ structural protein Chain: A: obscurin; solution structure of human obscurin ig58
c3j9eD_ viral protein Chain: D: vp5; atomic structure of a non-enveloped virus reveals ph sensors for a2 coordinated process of cell entry
c5elkA_ rna binding protein/rna Chain: A: ring finger protein unkempt homolog; crystal structure of mouse unkempt zinc fingers 4-6 (znf4-6), bound to2 rna
c3j9dA_ viral protein Chain: A: outer capsid protein vp2; atomic structure of a non-enveloped virus reveals ph sensors for a2 coordinated process of cell entry


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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