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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Nov 28

Fold library idPDB HeaderMoleculeTitle
c5aoqA_ transferase Chain: A: torso; structural basis of neurohormone perception by the receptor2 tyrosine kinase torso
c4ug3C_ cell cycle Chain: C: cell cycle protein gpsb; b. subtilis gpsb n-terminal domain
c5avmE_ ligase Chain: E: phosphoribosylformylglycinamidine cyclo-ligase; crystal structures of 5-aminoimidazole ribonucleotide (air)2 synthetase, purm, from thermus thermophilus
c4y0eB_ oxidoreductase Chain: B: putative dioxygenase; x-ray crystal structure of a putative dioxygenase from mycobacterium2 abscessus
c5dmnA_ transferase Chain: A: homocysteine s-methyltransferase; crystal structure of the homocysteine methyltransferase mmum from2 escherichia coli, apo form
c5an5J_ cell cycle Chain: J: cell cycle protein gpsb; b. subtilis gpsb c-terminal domain
c5c5sB_ signaling protein Chain: B: unconventional myosin-ixb; crystal structure of human myosin 9b rhogap domain at 2.2 angstrom
c5craB_ hydrolase Chain: B: sdea; structure of the sdea dub domain
c5eiqA_ immune system Chain: A: osteoclast-associated immunoglobulin-like receptor; human oscar ligand-binding domain
c5fj9O_ transcription Chain: O: dna-directed rna polymerase iii subunit rpc3; cryo-em structure of yeast apo rna polymerase iii at 4.6 a
c3x1mC_ transferase Chain: C: phosphopantetheine adenylyltransferase; crystal structure of phosphopantetheine adenylyltransferase/ppat from2 pseudomonas aeruginosa with coa
c5doiF_ dna binding protein Chain: F: telomerase associated protein p45; crystal structure of tetrahymena p45n and p19
c5dj3B_ transferase Chain: B: plp-dependent l-arginine hydroxylase mppp; structure of the plp-dependent l-arginine hydroxylase mppp with d-2 arginine bound
c4rv0H_ protein binding, transport protein Chain: H: nuclear protein localization protein 4 homolog; crystal structure of tn complex
c5daqA_ oxidoreductase Chain: A: phytanoyl-coa dioxygenase family protein (afu_orthologue fe(ii)/(alpha)ketoglutarate-dependent dioxygenase asqj in complex with2 4-methoxycyclopeptin
c4ug1A_ cell cycle Chain: A: cell cycle protein gpsb; gpsb n-terminal domain
c5bu8A_ viral protein Chain: A: dna stabilization protein; hk620 tail needle crystallized at ph 7.5 and derivatized with xenon
c5dznB_ immune system Chain: B: t-cell immunoglobulin and mucin domain-containing protein human t-cell immunoglobulin and mucin domain protein 4
c5e3eB_ toxin Chain: B: large exoprotein involved in heme utilization or adhesion; crystal structure of cdia-ct/cdii complex from y. kristensenii 33638
c4zceA_ allergen Chain: A: dust mite allergen; crystal structure of the dust mite allergen der p 23 from2 dermatophagoides pteronyssinus
c5fjaA_ transcription Chain: A: dna-directed rna polymerase iii subunit rpc1; cryo-em structure of yeast rna polymerase iii at 4.7 a
c5fj8N_ transcription Chain: N: dna-directed rna polymerase iii subunit rpc4; cryo-em structure of yeast rna polymerase iii elongation2 complex at 3.9 a
c5awwG_ protein transport/immune system Chain: G: putative preprotein translocase, secg subunit; precise resting state of thermus thermophilus secyeg
c4x0vH_ hydrolase Chain: H: beta-1,3-1,4-glucanase; structure of a gh5 family lichenase from caldicellulosiruptor sp. f32
c5eo4A_ hydrolase Chain: A: thioesterase; structural and biochemical characterization of the hypothetical2 protein sav2348 from staphylococcus aureus.
c5fkvD_ transferase Chain: D: dna polymerase iii epsilon; cryo-em structure of the e. coli replicative dna polymerase complex2 bound to dna (dna polymerase iii alpha, beta, epsilon, tau complex)
c5dw7A_ lyase Chain: A: germacradienol/geosmin synthase; crystal structure of the unliganded geosmin synthase n-terminal domain2 from streptomyces coelicolor
c5dj4D_ signaling protein Chain: D: sestrin-2; leucine-bound sestrin2 from homo sapiens
c5fjaI_ transcription Chain: I: dna-directed rna polymerase iii subunit rpc10; cryo-em structure of yeast rna polymerase iii at 4.7 a
c4rl5B_ protein binding Chain: B: exocyst complex component exo70a1; crystal structure of the arabidopsis exocyst subunit exo70 family2 protein a1
c2n8wA_ de novo protein Chain: A: designed protein da05r1; solution nmr structure of designed protein da05r1, northeast2 structural genomics consortium (nesg) target or690
c5er6C_ oxidoreductase Chain: C: oxidoreductase, short chain dehydrogenase/reductase family; crystal structure of an oxidoreductase from brucella ovis
c5fj9B_ transcription Chain: B: dna-directed rna polymerase iii subunit rpc2; cryo-em structure of yeast apo rna polymerase iii at 4.6 a
c4z87B_ oxidoreductase Chain: B: inosine-5'-monophosphate dehydrogenase; structure of the imp dehydrogenase from ashbya gossypii bound to gdp
c5fjaQ_ transcription Chain: Q: dna-directed rna polymerase iii subunit rpc7; cryo-em structure of yeast rna polymerase iii at 4.7 a
c5fj8Q_ transcription Chain: Q: dna-directed rna polymerase iii subunit rpc7; cryo-em structure of yeast rna polymerase iii elongation2 complex at 3.9 a
c5fj9P_ transcription Chain: P: dna-directed rna polymerase iii subunit rpc6; cryo-em structure of yeast apo rna polymerase iii at 4.6 a
c5aoqM_ transferase Chain: M: preproptth; structural basis of neurohormone perception by the receptor2 tyrosine kinase torso
c5fmfS_ transcription Chain: S: transcription initiation factor iie subunit beta, tfa2; the p-lobe of rna polymerase ii pre-initiation complex
c5fj9M_ transcription Chain: M: dna-directed rna polymerase iii subunit rpc5; cryo-em structure of yeast apo rna polymerase iii at 4.6 a
c5e3eA_ toxin Chain: A: cdii immunity protein; crystal structure of cdia-ct/cdii complex from y. kristensenii 33638
c5fj8C_ transcription Chain: C: dna-directed rna polymerases i and iii subunit rpac1; cryo-em structure of yeast rna polymerase iii elongation2 complex at 3.9 a
c5fmf1_ transcription Chain: 1: dna repair helicase rad25, ssl2; the p-lobe of rna polymerase ii pre-initiation complex
c5dpoA_ unknown function Chain: A: uncharacterized protein; the crystal structure of uncharacterized protein (lpg2149) from2 legionella pneumophila
c5fmfR_ transcription Chain: R: transcription initiation factor iie subunit alpha, tfa1; the p-lobe of rna polymerase ii pre-initiation complex
c5fkvA_ transferase Chain: A: dna polymerase iii subunit alpha; cryo-em structure of the e. coli replicative dna polymerase complex2 bound to dna (dna polymerase iii alpha, beta, epsilon, tau complex)
c5er3A_ solute-binding protein Chain: A: sugar abc transporter, periplasmic sugar-binding protein; crystal structure of abc transporter system solute-binding protein2 from rhodopirellula baltica sh 1
c5fmfY_ transcription Chain: Y: dna repair helicase rad3; the p-lobe of rna polymerase ii pre-initiation complex
c5fo3B_ cell cycle Chain: B: cell division protein zapc; zapc cell division regulator from e. coli
c5dzoA_ immune system Chain: A: hepatitis a virus cellular receptor 1; crystal structure of human t-cell immunoglobulin and mucin domain2 protein 1
c5ch4E_ protein transport Chain: E: protein translocase subunit sece; peptide-bound state of thermus thermophilus secyeg
c5enuB_ oxidoreductase Chain: B: alkyl hydroperoxide reductase/ thiol specific antioxidant/ crystal structure of an alkyl hyroperoxide reductase from burkholderia2 ambifaria
c5fj9Q_ transcription Chain: Q: dna-directed rna polymerase iii subunit rpc7; cryo-em structure of yeast apo rna polymerase iii at 4.6 a
c4x5oB_ ligase Chain: B: histidine--trna ligase, cytoplasmic; human histidine trna synthetase
c4x0nB_ hydrolase/hydrolase inhibitor Chain: B: helianthamide; porcine pancreatic alpha-amylase in complex with helianthamide, a2 novel proteinaceous inhibitor
c5fmfV_ transcription Chain: V: transcription initiation factor iif subunit beta, tfg2; the p-lobe of rna polymerase ii pre-initiation complex


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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