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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Oct 31

Fold library idPDB HeaderMoleculeTitle
c3jb6C_ transferase/viral protein Chain: C: vp1 csp; in situ structures of the segmented genome and rna polymerase complex2 inside a dsrna virus
c5dedA_ transferase Chain: A: gtp pyrophosphokinase yjbm; crystal structure of the small alarmone synthethase 1 from bacillus2 subtilis bound to its product pppgpp
c5e2eB_ hydrolase Chain: B: beta-lactamase; crystal structure of beta-lactamase precursor blaa from yersinia2 enterocolitica
c3x27C_ lyase Chain: C: cucumopine synthase; structure of mcbb in complex with tryptophan
c4zi9A_ cell adhesion Chain: A: mcg133388, isoform cra_t; structure of mouse clustered pcdhga1 ec1-3
c5dfmB_ nuclear protein Chain: B: maltose-binding periplasmic protein,telomerase-associated structure of tetrahymena telomerase p19 fused to mbp
c5dfnA_ nuclear protein Chain: A: telomerase associated protein p45; structure of tetrahymena telomerase p45 c-terminal domain
c5cthB_ transport protein Chain: B: bidirectional sugar transporter sweet2b; the 3.7 a resolution structure of a eukaryotic sweet transporter
c5dn6H_ hydrolase Chain: H: atp synthase subunit delta; atp synthase from paracoccus denitrificans
c5csaA_ ligase Chain: A: acetyl-coa carboxylase; crystal structure of domains bt-bccp-ac1-ac5 of yeast acetyl-coa2 carboxylase
c4zquA_ toxin Chain: A: cdia-ct toxin, conserved domain protein; cdia-ct/cdii toxin and immunity complex from yersinia2 pseudotuberculosis
c5dmhA_ unknown function Chain: A: uncharacterized protein conserved in bacteria; crystal structure of a domain of unknown function (duf1537) from2 ralstonia eutropha h16 (h16_a1561), target efi-511666, complex with3 adp.
c4yu5A_ hydrolase Chain: A: immune inhibitor a, metalloprotease; crystal structure of selenomethionine variant of bacillus anthracis2 immune inhibitor a2 peptidase zymogen
c4zppA_ cell adhesion Chain: A: mcg133388, isoform cra_f; crystal structure of protocadherin gamma c5 ec1-3
c5dn6P_ hydrolase Chain: P: atp synthase f0 subcomplex c subunit; atp synthase from paracoccus denitrificans
c4zqvA_ immune system Chain: A: cdii immunity protein; cdii immunity protein from yersinia kristensenii
c5dwnC_ transferase Chain: C: phosphinothricin n-acetyltransferase; crystal structure of phosphinothricin n-acetyltransferase from2 brucella ovis in complex with acetylcoa
c5ch2A_ transferase Chain: A: putative polycomb protein eed; crystal structure of an active polycomb repressive complex 2 in the2 basal state
c5cykB_ protein binding Chain: B: ribosome biogenesis protein erb1; structure of ytm1 bound to the c-terminal domain of erb1-r486e
c5cslA_ ligase Chain: A: acetyl-coa carboxylase; crystal structure of the 500 kd yeast acetyl-coa carboxylase2 holoenzyme dimer
c5df1A_ oxidoreductase Chain: A: iridoid synthase; iridoid synthase from catharanthus roseus - ternary complex with nadp+2 and geranic acid
c5ce9A_ oxidoreductase Chain: A: polyphenol oxidase; structure of tyrosinase from walnut (juglans regia)
c4zi8A_ cell adhesion Chain: A: protein pcdhgc3; structure of mouse clustered pcdhgc3 ec1-3
c5ch1B_ transferase Chain: B: putative polycomb protein ezh2,putative polycomb protein crystal structure of an active polycomb repressive complex 2 in the2 stimulated state
c3ja4A_ transferase Chain: A: rna-dependent rna polymerase; rna-dependent rna polymerases of transcribing cypoviruses
c5bwiB_ hydrolase Chain: B: glycoside hydrolase 44 family protein; crystallographic structure of a bacterial glucuronidase
c4rhzA_ toxin Chain: A: cry23aa1; crystal structure of cry23aa1 and cry37aa1 binary protein complex
c4zquB_ toxin Chain: B: cdii toxin; cdia-ct/cdii toxin and immunity complex from yersinia2 pseudotuberculosis
c5dn6G_ hydrolase Chain: G: atp synthase gamma chain; atp synthase from paracoccus denitrificans
c5dn6A_ hydrolase Chain: A: atp synthase subunit alpha; atp synthase from paracoccus denitrificans
c3jb6A_ transferase/viral protein Chain: A: rna-dependent rna polymerase; in situ structures of the segmented genome and rna polymerase complex2 inside a dsrna virus
c4zpmB_ cell adhesion Chain: B: protein pcdhac2; crystal structure of protocadherin alpha c2 ec1-3
c5ao6A_ endocytosis Chain: A: c-type mannose receptor 2; endo180 d1-4, trigonal form
c5dn6I_ hydrolase Chain: I: atp synthase epsilon chain; atp synthase from paracoccus denitrificans
c5cskB_ ligase Chain: B: acetyl-coa carboxylase; crystal structure of yeast acetyl-coa carboxylase, unbiotinylated
c5covA_ ligase Chain: A: naegleria gruberi rna ligase; structure and mechanism of a eukaryal nick-sealing rna ligase k170m+mn
c5diyB_ hydrolase Chain: B: hyaluronidase; thermobaculum terrenum o-glcnac hydrolase mutant - d120n
c5dn6X_ hydrolase Chain: X: atp synthase subunit a,atp synthase subunit a; atp synthase from paracoccus denitrificans
c5djsA_ transferase Chain: A: tetratricopeptide tpr_2 repeat protein; thermobaculum terrenum o-glcnac transferase mutant - k341m
c4rncB_ hydrolase Chain: B: esterase; crystal structure of an esterase rhest1 from rhodococcus sp. ecu1013
c5cxcA_ protein binding Chain: A: ribosome biogenesis protein ytm1; structure of ytm1 bound to the c-terminal domain of erb1 in p 65 2 22 space group
c3x1dA_ hydrolase Chain: A: atlastin; crystal structure of atlastin from drosophila melanogaster
c2n4nA_ de novo protein Chain: A: designed beta sheet; nmr structure for a 3-stranded parallel beta-sheet
c2mw4D_ transcription Chain: D: transcription factor protein; tetramerization domain of the ciona intestinalis p53/p73-b2 transcription factor protein
c5ch2B_ transferase Chain: B: putative polycomb protein ezh2,putative polycomb protein crystal structure of an active polycomb repressive complex 2 in the2 basal state
c4zplA_ cell adhesion Chain: A: protein pcdhb1; crystal structure of protocadherin beta 1 ec1-3
c5d1mB_ ligase Chain: B: e3 ubiquitin-protein ligase rnf25; crystal structure of ubch5b in complex with the ring-u5br fragment of2 ao7 (p199a)
c4regA_ unknown function Chain: A: uncharacterized protein; crystal structure analysis of pf0642
c4zkyB_ oxidoreductase Chain: B: pyridoxamine 5-phosphate oxidase; structure of f420 binding protein, msmeg_6526, from mycobacterium2 smegmatis
c4zpsA_ cell adhesion Chain: A: mcg133388, isoform cra_m; crystal structure of protocadherin gamma a8 ec1-3
c4rhzB_ toxin Chain: B: cry37aa1; crystal structure of cry23aa1 and cry37aa1 binary protein complex
c5aizA_ zinc-binding protein Chain: A: zinc finger miz domain-containing protein 1; the pias-like coactivator zmiz1 is a direct and selective cofactor2 of notch1 in t-cell development and leukemia
c3jb6B_ transferase/viral protein Chain: B: viral structural protein 4; in situ structures of the segmented genome and rna polymerase complex2 inside a dsrna virus
c5cs2A_ hydrolase Chain: A: histidine triad protein; crystal structure of plasmodium falciparum diadenosine triphosphate2 hydrolase in complex with cyclomarin a


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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