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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Oct 17

Fold library idPDB HeaderMoleculeTitle
c5da8N_ chaperone Chain: N: 60 kda chaperonin; crystal structure of chaperonin groel from
c4xu6A_ unknown function Chain: A: uncharacterized protein; crystal structure of cross-linked mvins r77c trimer at 1.9a resolution
c5c9eA_ membrane protein Chain: A: sepl; sepl
c4piaA_ hydrolase Chain: A: autolysin e; crystal structure of s. aureus autolysin e
c4rl3A_ hydrolase Chain: A: chitinase a; crystal structure of the catalytic domain of a family gh18 chitinase2 from fern, peteris ryukyuensis
c3wxxF_ membrane protein/chaperone Chain: F: aopb; crystal structure of a t3ss complex from aeromonas hydrophila
c4tx4B_ hydrolase inhibitor Chain: B: cysteine proteinase inhibitor; crystal structure of a single-domain cysteine protease inhibitor from2 cowpea (vigna unguiculata)
c4zm3C_ transferase Chain: C: aminotransferase; crystal structure of plp-dependent 3-aminobenzoate synthase pctv wild-2 type
c5ds0F_ hydrolase Chain: F: peptidase m42; crystal structure of tet aminopeptidase from marine sediment archaeon2 thaumarchaeota archaeon scgc ab-539-e09
c5ckwA_ transferase Chain: A: legk4; crystal structure of legk4_amppnp kinase
c5c2wD_ oxidoreductase Chain: D: hydrazine synthase alpha subunit; kuenenia stuttgartiensis hydrazine synthase pressurized with 20 bar2 xenon
c4rwtC_ structural protein Chain: C: leiomodin-2; structure of actin-lmod complex
c5cagA_ cell adhesion Chain: A: uncharacterized protein; crystal structure of a putative adhesin (bacova_02677) from2 bacteroides ovatus atcc 8483 at 3.00 a resolution (psi community3 target, nakayama)
c5cwsJ_ protein transport Chain: J: nucleoporin nup49; crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site
c5ceqA_ transferase/transferase inhibitor Chain: A: mitogen-activated protein kinase kinase kinase 12; dlk in complex with inhibitor 2-((1-cyclopentyl-5-(1-(oxetan-3-yl)2 piperidin-4-yl)-1h-pyrazol-3-yl)amino)isonicotinonitrile
c5bwkA_ hydrolase/transport Chain: A: atpase get3; 6.0 a crystal structure of a get3-get4-get5 intermediate complex from2 s.cerevisiae
c4tufC_ hydrolase Chain: C: major extracellular endoglucanase; catalytic domain of the major endoglucanase from xanthomonas2 campestris pv. campestris
c5ao4D_ hydrolase Chain: D: deoxynucleoside triphosphate triphosphohydrolase samhd1; crystal structure of in vitro phosphorylated human samhd12 (amino acid residues 115-626) bound to gtp
c5arhT_ hydrolase Chain: T: atp synthase f(0) complex subunit b1, mitochondrial; bovine mitochondrial atp synthase state 2a
c5e2hB_ hydrolase Chain: B: beta-lactamase; crystal structure of d-alanine carboxypeptidase ampc from2 mycobacterium smegmatis
c5dipB_ oxidoreductase Chain: B: alkyl hydroperoxide reductase ahpd; crystal structure of lpg0406 in reduced form from legionella2 pneumophila
c5a6eB_ transport Chain: B: pore domain of potassium channel subfamily t member 1; cryo-em structure of the slo2.2 na-activated k channel
c4txgA_ hydrolase Chain: A: chitinase; crystal structure of a family gh18 chitinase from chromobacterium2 violaceum
c5c2vB_ oxidoreductase Chain: B: hydrazine synthase beta subunit; kuenenia stuttgartiensis hydrazine synthase
c5c2wF_ oxidoreductase Chain: F: hypothetical (di heme) protein; kuenenia stuttgartiensis hydrazine synthase pressurized with 20 bar2 xenon
c4zylB_ signaling protein Chain: B: rphyb protein; crystal structure of response regulator rpa3017 in red light signaling2 of r. palustris
c4z8iA_ hydrolase Chain: A: peptidoglycan recognition protein 3; crystal structure of branchiostoma belcheri tsingtauense peptidoglycan2 recognition protein 3
c5e43A_ hydrolase Chain: A: beta-lactamase; crystal structure of beta-lactamase sros_5706 from streptosporangium2 roseum
c5cwsF_ protein transport Chain: F: nucleoporin nic96; crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site
c5c9dB_ hydrolase Chain: B: aprick protease; crystal structure of a retropepsin-like aspartic protease from2 rickettsia conorii
c4d53A_ structural protein Chain: A: bb0689; outer surface protein bb0689 from borrelia burgdorferi
c2n37A_ unknown function Chain: A: avr-pia protein; solution structure of avr-pia
c5dinB_ ligase Chain: B: ligand of numb protein x 2; structural basis for the indispensable role of a unique zinc finger2 motif in lnx2 ubiquitination
c5cwsE_ protein transport Chain: E: nucleoporin nup57; crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site
c4xuwA_ allergen Chain: A: non-specific lipid-transfer protein; structure of the hazelnut allergen, cor a 8
c4zgiA_ signaling protein Chain: A: traf-interacting protein with fha domain-containing protein structure of truncated human tifa
c5fikW_ hydrolase Chain: W: atp synthase subunit beta, mitochondrial; bovine mitochondrial atp synthase state 3a
c5du2B_ transferase Chain: B: espg2 glycosyltransferase; structural analysis of espg2 glycosyltransferase
c4zm4B_ transferase Chain: B: aminotransferase; complex structure of pctv k276r mutant with pmp and 3-dehydroshkimate
c4ys4A_ immune system Chain: A: merozoite surface protein p41; crystal structure of pf41 tandem 6-cys domains from plasmodium2 falciparum
c5c50B_ protein binding Chain: B: autophagy-related protein 13; crystal structure of the complex of human atg101-atg13 horma domain
c5cwsL_ protein transport Chain: L: nucleoporin nic96; crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site
c4zxvB_ oxidoreductase Chain: B: dnmz; streptomyces peucetius nitrososynthase dnmz in ligand-free state
c5cwsC_ protein transport Chain: C: nucleoporin nsp1; crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site
c4rwbB_ membrane protein Chain: B: matrix protein 2; racemic influenza m2-tm crystallized from monoolein lipidic cubic2 phase
c5filW_ atp synthase Chain: W: atp synthase subunit beta, mitochondrial; bovine mitochondrial atp synthase state 3b
c4tx8A_ hydrolase Chain: A: probable chitinase a; crystal structure of a family gh18 chitinase from chromobacterium2 violaceum
c5ady6_ ribosome Chain: 6: gtpase hflx; cryo-em structures of the 50s ribosome subunit bound with hflx
c5e2fB_ hydrolase Chain: B: beta-lactamase ybxi; crystal structure of beta-lactamase class d from bacillus subtilis
c2n6dA_ transferase Chain: A: n-acetylglucosamine-1-phosphotransferase subunits nmr structure of the 140-315 fragment of the n-acetylglucosamine-1-2 phosphate transferase, alpha and beta subunits
c4r16A_ oxidoreductase Chain: A: 418aa long hypothetical udp-n-acetyl-d-mannosaminuronic structure of udp-d-mannac dehdrogeanse from pyrococcus horikoshii
c5e2gA_ hydrolase Chain: A: beta-lactamase; crystal structure of d-alanine carboxypeptidase ampc from burkholderia2 cenocepacia
c2mt8A_ hydrolase inhibitor Chain: A: mtabl13 of grafted mcoti-ii; solution structure mtabl13, a grafted mcoti-ii
c4y7pA_ hydrolase Chain: A: alkaline d-peptidase; structure of alkaline d-peptidase from bacillus cereus
c5clrB_ transferase Chain: B: legk4; crystal structure of legk4_apo kinase
c4uciA_ transferase Chain: A: rna-directed rna polymerase l; x-ray structure and activities of an essential2 mononegavirales l-protein domain
c4rwbA_ membrane protein Chain: A: matrix protein 2; racemic influenza m2-tm crystallized from monoolein lipidic cubic2 phase
c5a6eC_ transport Chain: C: gating ring of potassium channel subfamily t member 1; cryo-em structure of the slo2.2 na-activated k channel
c5dn8A_ gtp-binding protein Chain: A: gtpase der; 1.76 angstrom crystal structure of gtp-binding protein der from2 coxiella burnetii in complex with gdp.
c2mvaA_ toxin Chain: A: rhtx toxin; solution structure of the toxin, rhtx
c5ady2_ ribosome Chain: 2: 50s ribosomal protein l34; cryo-em structures of the 50s ribosome subunit bound with hflx
c2myvA_ unknown function Chain: A: uncharacterized protein; solution structure of m. oryzae protein avr1-co39
c4rwtD_ structural protein Chain: D: leiomodin-2; structure of actin-lmod complex
c5dztA_ transferase Chain: A: cylm; crystal structure of class ii lanthipeptide synthetase cylm in complex2 with amp
c4rwcA_ membrane protein Chain: A: matrix protein 2; racemic m2-tm crystallized from racemic detergent
c5e2cA_ hydrolase Chain: A: xaa-pro dipeptidase; crystal structure of n-terminal domain of cytoplasmic peptidase pepq2 from mycobacterium tuberculosis h37rv


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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