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 Protein Homology/analogY Recognition Engine V 2.0


New fold library entries added 2015 Oct 10

Fold library idPDB HeaderMoleculeTitle
c4rfti_ virus Chain: I: coat protein; t=1 subviral particle of grouper nervous necrosis virus capsid protein2 deletion mutant (delta 1-34 & 218-338)
c4wysB_ transferase Chain: B: acetyl-coa acetyltransferase; crystal structure of thiolase from escherichia coli
c5dteD_ transport protein Chain: D: monosaccharide-transporting atpase; crystal structure of an abc transporter periplasmic solute binding2 protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081,3 target efi-511065) with bound d-allose
c4zsfA_ protein/dna Chain: A: bsawi endonuclease; crystal structure of pre-specific restriction endonuclease bsawi-dna2 complex
c5dfzA_ transferase Chain: A: vacuolar protein sorting-associated protein 38; structure of vps34 complex ii from s. cerevisiae.
c4rfuB_ viral protein Chain: B: coat protein; crystal structure of truncated p-domain from grouper nervous necrosis2 virus capsid protein at 1.2a
c4wiaA_ atp-binding protein Chain: A: putative flagella-related protein h; crystal structure of flagellar accessory protein flah from2 methanocaldococcus jannaschii
c4wl2F_ hydrolase Chain: F: putative exported choloylglycine hydrolase; structure of penicillin v acylase from pectobacterium atrosepticum
c4rfxA_ protein transport Chain: A: dynactin subunit 1; crystal structure of the dynactin dctn1 fragment involved in dynein2 interaction
c5a1qA_ unknown function Chain: A: af1502; crystal structure of archaeoglobus fulgidus af1502
c4uapA_ sugar binding protein Chain: A: glycosyl hydrolase, family 31/fibronectin type iii domain x-ray structure of gh31 cbm32-2 bound to galnac
c5cfkB_ dna binding protein Chain: B: proliferating cell nuclear antigen,proliferating cell crystal structure of proliferating cell nuclear antigen from2 leishmania donovani at 3.2 a resolution
c5cvlA_ protein binding Chain: A: wd repeat-containing protein 48; wdr48 (uaf-1), residues 2-580
c4d7pA_ oxidoreductase Chain: A: superoxide reductase; superoxide reductase (1fe-sor) from giardia intestinalis
c5cvoA_ hydrolase/protein binding Chain: A: wd repeat-containing protein 48; wdr48:usp46~ubiquitin ternary complex
c5dukA_ transcription Chain: A: putative dna binding protein; n-terminal structure of putative dna binding transcription factor from2 thermoplasmatales archaeon scgc ab-539-n05
c5dfzD_ transferase Chain: D: vacuolar protein sorting-associated protein 30; structure of vps34 complex ii from s. cerevisiae.
c3javD_ transport protein Chain: D: inositol 1,4,5-trisphosphate receptor type 1; structure of full-length ip3r1 channel in the apo-state determined by2 single particle cryo-em
c5cvoB_ hydrolase/protein binding Chain: B: ubiquitin carboxyl-terminal hydrolase 46; wdr48:usp46~ubiquitin ternary complex
c5dbjA_ flavoprotein Chain: A: fadh2-dependent halogenase plta; crystal structure of halogenase plta
c5e03A_ signaling protein Chain: A: mouse ctla-4 nanobody; crystal structure of mouse ctla-4 nanobody
c5dmpA_ hydrolase Chain: A: uncharacterized protein; structure of the archaeal nhej phosphoesterase from methanocella2 paludicola.
c2n5xA_ chaperone Chain: A: hsp90 co-chaperone cdc37; c-terminal domain of cdc37 cochaperone
c5cvoD_ hydrolase/protein binding Chain: D: wd repeat-containing protein 48; wdr48:usp46~ubiquitin ternary complex
c5dfzB_ transferase Chain: B: serine/threonine-protein kinase vps15; structure of vps34 complex ii from s. cerevisiae.
c5d19A_ transcription Chain: A: tetr family transcriptional regulator; crystal structure of mycobacterium tuberculosis rv0302, form ii
c4y6wA_ unknown function Chain: A: nab(ab)3acb - light chain tpr-like repeats; crystal structure of podosopora anserina putative kinesin light chain2 nearly identical tpr-like repeats
c5dzsA_ oxidoreductase Chain: A: shikimate dehydrogenase (nadp(+)); 1.5 angstrom crystal structure of shikimate dehydrogenase 1 from2 peptoclostridium difficile.
c5dmuA_ transferase Chain: A: nhej polymerase; structure of the nhej polymerase from methanocella paludicola
c5c5hA_ ligase Chain: A: 2-succinylbenzoate--coa ligase; r195k e. coli mene with bound osb-ams
c5cpgA_ lyase Chain: A: (r)-specific enoyl-coa hydratase; r-hydratase phaj1 from pseudomonas aeruginosa in the unliganded form
c4z0cA_ immune system Chain: A: toll-like receptor 13; crystal structure of tlr13-ssrna13 complex
c5d5nA_ viral protein Chain: A: virion egress protein ul34 homolog; crystal structure of the human cytomegalovirus pul50-pul53 complex
c5bx9A_ hydrolase Chain: A: pslg; structure of pslg from pseudomonas aeruginosa
c5d5nB_ viral protein Chain: B: virion egress protein ul31 homolog; crystal structure of the human cytomegalovirus pul50-pul53 complex
c4ybqB_ transport protein/immune system Chain: B: solute carrier family 2, facilitated glucose transporter rat glut5 with fv in the outward-open form
c4rt4E_ protein binding Chain: E: peptide from compass component bre2; crystal structure of dpy30 complexed with bre2
c5dfzC_ transferase Chain: C: phosphatidylinositol 3-kinase vps34; structure of vps34 complex ii from s. cerevisiae.
c5dvyA_ penicillin-binding protein Chain: A: penicillin binding protein 2 prime; 2.95 angstrom crystal structure of the dimeric form of penicillin2 binding protein 2 prime from enterococcus faecium
c4rtaB_ protein binding Chain: B: protein dpy-30 homolog; cystal structure of the dpy30 for mll/set1 compass h3k4 trimethylation
c5dboA_ translation Chain: A: translation initiation factor eif-2b-like protein; crystal structure of the tetrameric eif2b-beta2-delta2 complex from c.2 thermophilum
c2n7pA_ transferase Chain: A: putative uncharacterized protein; solution structure of pdz domain

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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