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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Sep 05

Fold library idPDB HeaderMoleculeTitle
c4wp3E_ lyase Chain: E: ma1120; crystal structure of adenylyl cyclase from mycobacterium avium ma11202 wild type
c5a13J_ oxidoreductase Chain: J: chlorite dismutase; crystal structure of chlorite dismutase from2 magnetospirillum sp. in complex with thiocyanate
c4zxaB_ oxidoreductase Chain: B: hydroquinone dioxygenase small subunit; crystal structure of hydroquinone 1,2-dioxygenase pnpcd in complex2 with cd2+ and 4-hydroxybenzonitrile
c5bpwA_ cell cycle Chain: A: anaphase-promoting complex subunit 4; atomic-resolution structures of the apc/c subunits apc4 and the apc52 n-terminal domain
c4z7aA_ transferase Chain: A: mycobacterium tuberculosis (3,3)l,d-transpeptidase type 5; structural and biochemical characterization of a non-functionally2 redundant m. tuberculosis (3,3) l,d-transpeptidase, ldtmt5.
c5bqtC_ dna binding protein Chain: C: putative hth-type transcriptional regulator trmbl2; structure of trmbl2, an archaeal chromatin protein, shows a novel mode2 of dna binding.
c4wheA_ signaling protein Chain: A: phage shock protein a; crystal structure of e. coli phage shock protein a (pspa 1-144)
c5bxbB_ protein binding Chain: B: btb/poz domain-containing protein kctd1; crystal structure of pentameric kctd1 btb domain form 1
c5a40C_ transport protein Chain: C: putative fluoride ion transporter crcb; crystal structure of a dual topology fluoride ion channel.
c4y89B_ cell adhesion Chain: B: carcinoembryonic antigen-related cell adhesion molecule 7; crystal structure of the n-terminal domain of ceacam7
c5cxlA_ toxin Chain: A: bifunctional hemolysin/adenylate cyclase; crystal structure of rtx domain block v of adenylate cyclase toxin2 from bordetella pertussis
c5bxhB_ protein binding Chain: B: btb/poz domain-containing protein kctd9; crystal structure of pentameric kctd9 btb domain
c5abvF_ translation Chain: F: gh11071p; complex of d. melanogaster eif4e with the 4e-binding2 protein mextli
c4r8dB_ transferase Chain: B: histidinol-phosphate aminotransferase; crystal structure of rv1600 encoded aminotransferase in complex with2 plp-mes from mycobacterium tuberculosis
c4qprA_ transferase Chain: A: sensor protein kdpd; crystal structure of gaf domain of potassium sensor histidine kinase2 kdpd from escherichia coli
c4zxcW_ oxidoreductase Chain: W: hydroquinone dioxygenase large subunit; crystal structure of hydroquinone 1,2-dioxygenase pnpcd in complex2 with fe3+
c4u7nA_ transferase Chain: A: histidine protein kinase sensor protein; inactive structure of histidine kinase
c4xz8A_ rna binding protein Chain: A: nucleoprotein; the crystal structure of erve virus nucleoprotein
c5a9bA_ viral protein Chain: A: polyhedrin; crystal structure of bombyx mori cpv1 polyhedra base domain2 deleted mutant
c4xzeA_ rna binding protein Chain: A: nucleoprotein; the crystal structure of hazara virus nucleoprotein
c4y4vB_ hydrolase Chain: B: conserved hypothetical secreted protein; structure of helicobacter pylori csd6 in the d-ala-bound state
c5c0sA_ viral protein/immune system Chain: A: hemagglutinin, envelope glycoprotein, fibritin fusion crystal structure of a generation 4 influenza hemagglutinin stabilized2 stem in complex with the broadly neutralizing antibody cr6261
c5c8jJ_ membrane protein Chain: J: protein mj0480; a yidc-like protein in the archaeal plasma membrane
c5a79A_ virus Chain: A: capsid protein; novel inter-subunit contacts in barley stripe mosaic virus2 revealed by cryo-em
c5abxB_ translation Chain: B: 4e-binding protein mextli; complex of c. elegans eif4e-3 with the 4e-binding protein2 mextli and cap analog
c5a8sA_ viral protein Chain: A: polyhedrin; crystal structure of antheraea mylitta cpv4 polyhedra type 1
c5bq5A_ atp-binding protein Chain: A: insertion sequence is5376 putative atp-binding protein; crystal structure of the istb aaa+ domain bound to adp-bef3
c5aheA_ isomerase Chain: A: crystal structure of salmonella enterica hisa
c5d66B_ structural genomics, unknown function Chain: B: uncharacterized protein; crystal structure of an ankyrin repeat domain (abaye2397) from2 acinetobacter baumannii aye at 1.00 a resolution
c5a99A_ viral protein Chain: A: polyhedrin; crystal structure of operophtera brumata cpv19 polyhedra
c5a98A_ viral protein Chain: A: polyhedrin; crystal structure of trichoplusia ni cpv15 polyhedra
c5d9lA_ transferase/transferase inhibitor Chain: A: ribosomal protein s6 kinase alpha-3; rsk2 n-terminal kinase in complex with bis-phenol pyrazole
c5axwA_ hydrolase/rna/dna Chain: A: crispr-associated endonuclease cas9; crystal structure of staphylococcus aureus cas9 in complex with sgrna2 and target dna (ttgggt pam)
c5a9cA_ viral protein Chain: A: polyhedrin; crystal structure of antheraea mylitta cpv4 polyhedra base2 domain deleted mutant
c4tz7A_ transferase Chain: A: phosphatidylinositol-4-phosphate 5-kinase, type i, alpha; crystal structure of a kinase
c5a8vA_ viral protein Chain: A: polyhedrin; crystal structure of orgyia pseudotsugata cpv5 polyhedra2 with semet substitution
c4yntA_ oxidoreductase Chain: A: glucose oxidase, putative; crystal structure of aspergillus flavus fad glucose dehydrogenase
c4uhxA_ oxidoreductase Chain: A: aldehyde oxidase; human aldehyde oxidase in complex with phthalazine and thioridazine
c5c0rA_ viral protein/immune system Chain: A: hemagglutinin, envelope glycoprotein, fibritin fusion crystal structure of a generation 3 influenza hemagglutinin stabilized2 stem complexed with the broadly neutralizing antibody c179
c4zm7A_ hydrolase Chain: A: endoglucanase v-like protein; pccel45a n105d mutatnt at cryo condition
c5ccuA_ hydrolase Chain: A: putative secreted endoglycosylceramidase; crystal structure of endoglycoceramidase i from rhodococ-cus equi
c5byhM_ transferase Chain: M: rna polymerase sigma-54 factor; crystal structure of escherichia coli rna polymerase - sigma542 holoenzyme complex
c4xzcB_ rna binding protein Chain: B: nucleoprotein; the crystal structure of kupe virus nucleoprotein
c5a9aA_ viral protein Chain: A: polyhedrin; crystal structure of simulium ubiquitum cpv20 polyhedra
c5a96A_ viral protein Chain: A: polyhedrin; crystal structure of lymantria dispar cpv14 polyhedra
c5a43B_ transport protein Chain: B: putative fluoride ion transporter crcb; crystal structure of a dual topology fluoride ion channel.


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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