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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Aug 29

Fold library idPDB HeaderMoleculeTitle
c5cfmA_ immune system Chain: A: stimulator of interferon genes; crystal structure of anemone sting (nematostella vectensis) in complex2 with 3', 3' cgamp, c[g(3', 5')pa(3', 5')p]
c5a3fD_ endocytosis Chain: D: dynamin 3; crystal structure of the dynamin tetramer
c2msfA_ toxin Chain: A: peptide tspep1; nmr solution structure of scorpion venom toxin ts11 (tspep1) from2 tityus serrulatus
c3wy8A_ hydrolase Chain: A: serine protease; crystal structure of protease anisep from arthrobacter nicotinovorans
c4rjfD_ replication Chain: D: cyclin-dependent kinase inhibitor 1; crystal structure of the human sliding clamp at 2.0 angstrom2 resolution
c5a6wC_ antiviral protein Chain: C: avr-pik protein; complex of rice blast (magnaporthe oryzae) effector protein avr-pikd2 with the hma domain of pikp1 from rice (oryza sativa)
c5d2eA_ oxidoreductase Chain: A: mlne; crystal structure of an n-terminal ketoreductase from macrolactin2 assembly line
c5a6wA_ antiviral protein Chain: A: resistance protein pikp-1; complex of rice blast (magnaporthe oryzae) effector protein avr-pikd2 with the hma domain of pikp1 from rice (oryza sativa)
c5burB_ ligase Chain: B: 2-succinylbenzoate--coa ligase; o-succinylbenzoate coenzyme a synthetase (mene) from bacillus2 subtilis, in complex with atp and magnesium ion
c5c2uA_ transport protein Chain: A: nup54; ferredoxin-like domain of nucleoporin nup54 bound to a nanobody
c4xd7B_ hydrolase Chain: B: atp synthase subunit alpha; structure of thermophilic f1-atpase inhibited by epsilon subunit
c5btyA_ unknown function Chain: A: lpg1496; structure of the middle domain of lpg1496 from legionella pneumophila2 in p21 space group
c4ygaH_ metal binding protein Chain: H: vhh-1b7; cdpk1, from toxoplasma gondii, bound to inhibitory vhh-1b7
c5a10A_ immune system Chain: A: thiocyanate forming protein; the crystal structure of ta-tfp, a thiocyanate-forming protein2 involved in glucosinolate breakdown (space group c2)
c4u4pA_ protein binding Chain: A: structural maintenance of chromosomes protein 2; crystal structure of the human condensin smc hinge domain heterodimer2 with short coiled coils
c5buqA_ ligase Chain: A: 2-succinylbenzoate--coa ligase; unliganded form of o-succinylbenzoate coenzyme a synthetase (mene)2 from bacillus subtilis, solved at 1.98 angstroms
c4wzsA_ transcription Chain: A: ecu11_1470 protein; crystal structure of the mot1 n-terminal domain in complex with tbp2 and nc2 bound to a promoter dna fragment
c5co9C_ hormone Chain: C: insulin; crystal structure of human zinc insulin at ph 6.5
c5ajfB_ copper-binding protein Chain: B: copper storage protein 1; cu(i)-csp1 (copper storage protein 1) from methylosinus trichosporium2 ob3b
c4rjfB_ replication Chain: B: cyclin-dependent kinase inhibitor 1; crystal structure of the human sliding clamp at 2.0 angstrom2 resolution
c4zhjA_ metal binding protein Chain: A: mg-chelatase subunit chlh; crystal structure of the catalytic subunit of magnesium chelatase
c3x0tA_ toxin Chain: A: uncharacterized protein; crystal structure of pira
c5a08A_ transferase Chain: A: probable mannosyltransferase ktr4; x-ray structure of the mannosyltransferase ktr4p from s. cerevisiae
c4rl4B_ hydrolase Chain: B: gtp cyclohydrolase-2; crystal structure of gtp cyclohydrolase ii from helicobacter pylori2 26695
c4y7jE_ membrane protein,transport protein Chain: E: large conductance mechanosensitive channel protein, structure of an archaeal mechanosensitive channel in expanded state
c4pvzD_ protein binding Chain: D: inner nuclear membrane protein heh2; structure of yeast importin a bound to the membrane protein nuclear2 localization signal sequence of inm protein heh2
c5cnyA_ hormone Chain: A: insulin; crystal structure of human zinc insulin at ph 5.5
c5c9aB_ virus Chain: B: vp0; crystal structure of empty coxsackievirus a16 particle
c5cm7A_ transferase Chain: A: thiamine-monophosphate kinase; structure of thiamine-monophosphate kinase from acinetobacter2 baumannii in complex with adenosine diphosphate (adp) and thiamine3 diphosphate (tpp)
c3x0uB_ toxin Chain: B: uncharacterized protein; crystal structure of pirb
c4v2pB_ transferase Chain: B: ketosynthase; ketosynthase mxnb
c5c3lC_ transport protein Chain: C: nucleoporin nup62; structure of the metazoan nup62.nup58.nup54 nucleoporin complex.
c2mt3A_ transcription Chain: A: rna polymerase sigma-54 factor; struture of -24 dna binding domain of sigma 54 from e.coli
c5cb6A_ transferase Chain: A: probable adenylyl-sulfate kinase; structure of adenosine-5'-phosphosulfate kinase
c5co2C_ hormone Chain: C: insulin; crystalization of human zinc insulin at ph 5.5
c5abkA_ hydrolase Chain: A: metalloprotease; structure of the n-terminal domain of the metalloprotease2 prtv from vibrio cholerae
c4wzsB_ transcription Chain: B: tata-binding protein-associated phosphoprotein; crystal structure of the mot1 n-terminal domain in complex with tbp2 and nc2 bound to a promoter dna fragment
c5cnyC_ hormone Chain: C: insulin; crystal structure of human zinc insulin at ph 5.5
c5co2A_ hormone Chain: A: insulin; crystalization of human zinc insulin at ph 5.5
c5co6C_ hormone Chain: C: insulin; crystal structure of human zinc insulin at ph 6.5
c5d6aA_ hydrolase Chain: A: predicted atpase of the abc class; 2.7 angstrom crystal structure of abc transporter atpase from vibrio2 vulnificus in complex with adenylyl-imidodiphosphate (amp-pnp)
c5c3lB_ transport protein Chain: B: nucleoporin nup58; structure of the metazoan nup62.nup58.nup54 nucleoporin complex.
c4pvzC_ protein binding Chain: C: inner nuclear membrane protein heh2; structure of yeast importin a bound to the membrane protein nuclear2 localization signal sequence of inm protein heh2
c4u4pB_ protein binding Chain: B: structural maintenance of chromosomes protein 4; crystal structure of the human condensin smc hinge domain heterodimer2 with short coiled coils
c4xd7G_ hydrolase Chain: G: atp synthase gamma chain; structure of thermophilic f1-atpase inhibited by epsilon subunit
c5c3lA_ transport protein Chain: A: nup54; structure of the metazoan nup62.nup58.nup54 nucleoporin complex.
c5co6A_ hormone Chain: A: insulin; crystal structure of human zinc insulin at ph 6.5
c4w5uA_ hydrolase Chain: A: chitinase; crystal structure of chitinase 40 from thermophilic bacteria2 streptomyces thermoviolaceus.
c5co9A_ hormone Chain: A: insulin; crystal structure of human zinc insulin at ph 6.5
c4yptA_ hydrolase Chain: A: replicase polyprotein 1ab; x-ray structural of three tandemly linked domains of nsp3 from murine2 hepatitis virus at 2.60 angstroms resolution
c4rj9A_ ligase Chain: A: c2 domain-containing protein-like; structure of a plant specific c2 domain protein, osgap1 from rice


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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