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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Aug 22

Fold library idPDB HeaderMoleculeTitle
c4ubrA_ transferase Chain: A: putative acetyltransferase; crystal structure of pseudomonas aeruginosa n-aetyltransferase pa4534
c2mx8A_ structural protein Chain: A: minor ampullate spidroin; nmr structure of n-terminal domain from a. ventricosus minor ampullate2 spidroin (misp) at ph 7.2
c5c76D_ transport protein Chain: D: wlab protein; atp-driven lipid-linked oligosaccharide flippase pglk in apo-inward2 facing state (2)
c4zsxA_ unknown function Chain: A: uncharacterized fusion protein; structure of a fusion protein with a helix linker, 2arh-3-3kaw-2.0
c4rdrA_ membrane protein Chain: A: znud; structure of the bacterial zn-transporter znud from neisseria2 meningitidis (locked conformation bound to zinc and cadmium ions)
c4xb6D_ transferase Chain: D: alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase; structure of the e. coli c-p lyase core complex
c4wybJ_ contractile protein/protein binding Chain: J: bud site selection protein 6; structure of the bud6 flank domain in complex with actin
c4qyjD_ oxidoreductase Chain: D: aldehyde dehydrogenase; structure of phenylacetaldehyde dehydrogenase from pseudomonas putida2 s12
c4wybP_ contractile protein/protein binding Chain: P: bud site selection protein 6; structure of the bud6 flank domain in complex with actin
c4xi0E_ protein binding Chain: E: magnetosome protein mama; mama 41-end from desulfovibrio magneticus rs-1
c3x38B_ replication regulator Chain: B: mitochondrial morphogenesis protein sld7; crystal structure of the c-terminal domain of sld7
c4za1A_ transferase Chain: A: nosa; crystal structure of nosa involved in nosiheptide biosynthesis
c4s3jC_ hydrolase Chain: C: cortical-lytic enzyme; crystal structure of the bacillus cereus spore cortex-lytic enzyme2 slel
c4r42B_ oxidoreductase Chain: B: alr3090 protein; crystal structure of katb, a manganese catalase from anabaena pcc7120
c4v34A_ transferase Chain: A: alanyl-trna-dependent l-alanyl- phophatidylglycerol the structure of a-pgs from pseudomonas aeruginosa (semet2 derivative)
c5a3kA_ oxidoreductase Chain: A: putative pteridine-dependent dioxygenase; chorismatase mechanisms reveal fundamentally different2 types of reaction in a single conserved protein fold
c5cy4C_ oxidoreductase Chain: C: oligoribonuclease; crystal structure of an oligoribonuclease from acinetobacter baumannii
c5cqsC_ protein binding Chain: C: elongator complex protein 1; dimerization of elp1 is essential for elongator complex assembly
c4zebA_ transport protein Chain: A: abc transporter, substrate binding protein (agrocinopines a pbp acca from a. tumefaciens c58 in complex with agrocinopine a
c4zlpB_ transcription Chain: B: neurogenic locus notch homolog protein 3; crystal structure of notch3 negative regulatory region
c4uylB_ oxidoreductase Chain: B: 14-alpha sterol demethylase; crystal structure of sterol 14-alpha demethylase (cyp51b) from a2 pathogenic filamentous fungus aspergillus fumigatus in complex3 with vni
c3x37B_ replication regulator Chain: B: mitochondrial morphogenesis protein sld7; crystal structure of the n-terminal domain of sld7 in complex with2 sld3
c4v36B_ transferase Chain: B: lysyl-trna-dependent l-ysyl-phosphatidylgycerol synthase; the structure of l-pgs from bacillus licheniformis
c2mt7A_ toxin Chain: A: hs1a; solution structure of spider-venom peptide hs1a
c5by1A_ viral protein Chain: A: non-structural protein 1; h18 bat influenza ns1 rna binding domain
c4d7wA_ hydrolase Chain: A: sortase family protein; crystal structure of sortase c1 (srtc1) from streptococcus agalactiae
c5bqnA_ hydrolase Chain: A: botulinum neurotoxin type d,botulinum neurotoxin type d; crystal structure of the lhn fragment of botulinum neurotoxin type d,2 mutant h233y e230q
c5c5zA_ hydrolase Chain: A: glutamyl-trna amidotransferase; crystal structure analysis of c4763, a uropathogenic e. coli-specific2 protein
c4yn8A_ dna binding protein Chain: A: response regulator chra; crystal structure of response regulator chra in heme-sensing two2 component system
c2n3jA_ chaperone Chain: A: heat shock protein beta-1; solution structure of the alpha-crystallin domain from the redox-2 sensitive chaperone, hspb1
c4xb6C_ transferase Chain: C: alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase structure of the e. coli c-p lyase core complex
c5a0tA_ hydrolase/rna Chain: A: ribonuclease j; catalysis and 5' end sensing by ribonuclease rnase j of the2 metallo-beta-lactamase family
c5d3iA_ immune system Chain: A: toll-like receptor 2; crystal structure of the ssl3-tlr2 complex
c4xb6E_ transferase Chain: E: alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase structure of the e. coli c-p lyase core complex
c4s3kA_ hydrolase Chain: A: spore germination protein yaah; crystal structure of the bacillus megaterium qm b1551 spore cortex-2 lytic enzyme slel
c4xpuA_ hydrolase Chain: A: endonuclease v; the crystal structure of endov from e.coli
c4uxeB_ viral protein Chain: B: large tail fiber protein p34; crystal structure of the carboxy-terminal region of the2 bacteriophage t4 proximal long tail fibre protein gp34,3 p21 selenomethionine crystal
c4xz6A_ transport protein Chain: A: glycine betaine/proline abc transporter, periplasmic tmox in complex with tmao
c4zh7A_ sugar binding protein Chain: A: outer membrane protein-adhesin; structural basis of lewisb antigen binding by the helicobacter pylori2 adhesin baba
c4xl5C_ protein binding Chain: C: bgfp-a; x-ray structure of bgfp-a / egfp complex
c4zp0A_ transport protein Chain: A: multidrug transporter mdfa; crystal structure of e. coli multidrug transporter mdfa in complex2 with deoxycholate
c3x37A_ replication regulator Chain: A: zyro0c14696p; crystal structure of the n-terminal domain of sld7 in complex with2 sld3
c4nc6A_ hydrolase activator Chain: A: rab gtpase-activating protein 1; tbc domain of human rab gtpase-activating protein 1
c4rdtA_ membrane protein Chain: A: znud; structure of the bacterial zn-transporter znud from neisseria2 meningitidis (flexible conformation bound to a zinc ion)
c5cqrA_ protein binding Chain: A: elongator complex protein 1; dimerization of elp1 is essential for elongator complex assembly
c2n58A_ transferase Chain: A: lipopolysaccharide core biosynthesis protein rfag; structure of an n-terminal membrane-anchoring region of the2 glycosyltransferase waag
c2mvgA_ cell adhesion Chain: A: decorin-binding protein b; solution structure of decorin binding protein b from borrelia2 burgdorferi
c4y28I_ photosynthesis Chain: I: photosystem i reaction center subunit viii; the structure of plant photosystem i super-complex at 2.8 angstrom2 resolution.
c4y28K_ photosynthesis Chain: K: photosystem i reaction center subunit x psak; the structure of plant photosystem i super-complex at 2.8 angstrom2 resolution.
c5a22A_ transferase Chain: A: vesicular stomatitis virus l polymerase; structure of the l protein of vesicular stomatitis virus from2 electron cryomicroscopy
c4rvwA_ transport protein Chain: A: znud; structure of the bacterial zn-transporter znud from neisseria2 meningitidis (soaked with 20 m zinc)


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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