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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Aug 15

Fold library idPDB HeaderMoleculeTitle
c5cyaA_ chaperone Chain: A: tubulin-specific chaperone c; crystal structure of arl2 gtpase-activating protein tubulin cofactor c2 (tbcc)
c4xgrG_ toxin/antitoxin Chain: G: ribonuclease vapc30; crystal structure of addiction module from mycobacterial species
c4uj3B_ transport protein Chain: B: rab-3a-interacting protein; crystal structure of human rab11-rabin8-fip3
c4zyeA_ transferase Chain: A: methylated-dna--protein-cysteine methyltransferase; crystal structure of sulfolobus solfataricus o6-methylguanine2 methyltransferase
c4uunA_ oxidoreductase Chain: A: l-lactate dehydrogenase; trichomonas vaginalis lactate dehydrogenase in complex with nadh
c4qivA_ structural protein Chain: A: bacterial microcompartments family protein; crystal structure of hexameric microcomparment shell protein from2 aeromonas hydrophila
c4wtrA_ transferase Chain: A: beta-1,3-glucanosyltransferase; active-site mutant of rhizomucor miehei beta-1,3-glucanosyltransferase2 in complex with laminaribiose
c5a9eE_ viral protein Chain: E: deltambd gag protein; cryo-electron tomography and subtomogram averaging of rous-2 sarcoma-virus deltambd virus-like particles
c4r73B_ transport protein Chain: B: abc-type fe3+ transport system, periplasmic component; structure of the periplasmic binding protein afua from actinobacillus2 pleuropneumoniae (endogenous glucose-6-phosphate and mannose-6-3 phosphate bound)
c4xgqD_ toxin/antitoxin Chain: D: antitoxin vapb30; crystal structure of addiction module from mycobacterial species
c4p3wE_ cell adhesion Chain: E: filamin-a; crystal structure of the human filamin a ig-like domains 20-21 in2 complex with migfilin peptide
c4zp4D_ protein transport/transcription Chain: D: endothelial pas domain-containing protein 1; crystal structure of the heterodimeric hif-2a:arnt complex
c4zp4A_ protein transport/transcription Chain: A: aryl hydrocarbon receptor nuclear translocator; crystal structure of the heterodimeric hif-2a:arnt complex
c4w4tA_ oxidoreductase Chain: A: mxaa; the crystal structure of the terminal r domain from the myxalamid pks-2 nrps biosynthetic pathway
c4ykbE_ plant protein Chain: E: tetrapyrrole-binding protein; structure of gun4 from chlamydomonas reinhardtii
c5cmoB_ transferase Chain: B: holo-[acyl-carrier-protein] synthase; crystal structure of holo-[acyl-carrier-protein] synthase (acps) from2 neisseria meningitidis
c5bn7A_ hydrolase Chain: A: maltodextrin glucosidase; crystal structure of maltodextrin glucosidase from e.coli at 3.7 a2 resolution
c4r1oF_ isomerase Chain: F: l-arabinose isomerase; crystal structure of thermophilic apo l-arabinose isomerase from2 geobacillus kaustophilus
c4y0aA_ transferase/transferase inhibitor Chain: A: shikimate kinase; shikimate kinase from acinetobacter baumannii in complex with2 shikimate
c4r77A_ transferase Chain: A: choline kinase; crystal structure of choline kinase lica from streptococcus pneumoniae
c5bv3C_ hydrolase Chain: C: m7gpppx diphosphatase; yeast scavenger decapping enzyme in complex with m7gdp
c3wwjE_ transferase Chain: E: (r)-amine transaminase; crystal structure of an engineered sitagliptin-producing transaminase,2 ata-117-rd11
c4uysA_ cell adhesion Chain: A: flocculation protein flo11; x-ray structure of the n-terminal domain of the flocculin2 flo11 from saccharomyces cerevisiae
c4xgqB_ toxin/antitoxin Chain: B: antitoxin vapb30; crystal structure of addiction module from mycobacterial species
c5cviB_ transcription regulator Chain: B: slor; structure of the manganese regulator slor
c4rs9B_ transcription regulator Chain: B: protein tify 7; structure of myc3 n-terminal jaz-binding domain [44-238] in complex2 with jas motif of jaz9
c4yiyA_ rna binding protein Chain: A: krna editing a6 specific protein; structure of mrb1590 bound to amp-pnp
c4ri3A_ membrane protein Chain: A: photosystem ii 22 kda protein, chloroplastic; crystal structure of dccd-modified psbs from spinach
c4r8fB_ hydrolase Chain: B: vacuolar aminopeptidase 1; crystal structure of yeast aminopeptidase 1 (ape1)
c4r2nA_ transferase Chain: A: putative phenylalanine aminotransferase; crystal structure of rv3772 in complex with its substrate
c4z5qA_ oxidoreductase Chain: A: cytochrome p450 hydroxylase; crystal structure of the lnmz cytochrome p450 hydroxylase from the2 leinamycin biosynthetic pathway of streptomyces atroolivaceus s-1403 at 1.8 a resolution
c4zjvD_ transferase/inhibitor Chain: D: erbb receptor feedback inhibitor 1; crystal structure of egfr kinase domain in complex with mitogen-2 inducible gene 6 protein
c4uupB_ oxidoreductase Chain: B: malate dehydrogenase; reconstructed ancestral trichomonad malate dehydrogenase in2 complex with nadh, so4, and po4
c4ytlB_ transcription Chain: B: transcription elongation factor spt5; structure of the kow2-kow3 domain of transcription elongation factor2 spt5.
c4xgrF_ toxin/antitoxin Chain: F: antitoxin vapb30; crystal structure of addiction module from mycobacterial species
c4y0lA_ membrane protein Chain: A: putative membrane protein mmpl11; mycobacterial membrane protein mmpl11d2
c4zprB_ protein transport/transcription/dna Chain: B: hypoxia-inducible factor 1-alpha; crystal structure of the heterodimeric hif-1a:arnt complex with hre2 dna
c5boiA_ unknown function Chain: A: germination protein ypeb; bacillus megaterium ypeb c-terminal domain
c4ytkA_ transcription Chain: A: transcription elongation factor spt5; structure of the kow1-linker1 domain of transcription elongation2 factor spt5
c4yh8A_ splicing Chain: A: splicing factor u2af 23 kda subunit; structure of yeast u2af complex
c5czgA_ gene regulation Chain: A: hypothetical bromodomain; crystal structure analysis of hypothetical bromodomain tb427.10.74202 from trypanosoma brucei in complex with bromosporine
c4xgrH_ toxin/antitoxin Chain: H: antitoxin vapb30; crystal structure of addiction module from mycobacterial species
c2rv8A_ dna binding protein Chain: A: dna-binding response regulator; solution structure of the phop dna-binding domain from mycobacterium2 tuberculosis
c5cyuA_ membrane protein Chain: A: conserved membrane protein; structure of the soluble domain of eccb1 from the mycobacterium2 smegmatis esx-1 secretion system.
c5cr9A_ transport protein Chain: A: abc-type fe3+-hydroxamate transport system, periplasmic crystal structure of abc-type fe3+-hydroxamate transport system from2 saccharomonospora viridis dsm 43017
c2my3B_ splicing Chain: B: pre-mrna leakage protein 1; snu17p-pml1p structure intermediate during res complex assembly
c4yh8B_ splicing Chain: B: splicing factor u2af 59 kda subunit; structure of yeast u2af complex
c3jamh_ translation Chain: H: es7; cryoem structure of 40s-eif1a-eif1 complex from yeast


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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