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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Aug 08

Fold library idPDB HeaderMoleculeTitle
c5c7eB_ transcription Chain: B: aspr2 protein; crystal structure of the rice topless related protein 2 (tpr2) n-2 terminal domain (1-209) in complex with arabidopsis iaa10 peptide
c5afoA_ cell adhesion Chain: A: fimbriae; long polar fimbriae adhesin lpfd from the adherent invasive2 e. coli strain lf82
c5bs1C_ chaperone Chain: C: crrbcx-iia; crystal structure of rbcx-iia from chlamydomonas reinhardtii
c4y7lB_ membrane protein Chain: B: type vi secretion protein icmf; t6ss protein tssm c-terminal domain (869-1107) from eaec
c4xc9B_ oxidoreductase Chain: B: oxidase/hydroxylase; crystal structure of apo hygx from streptomyces hygroscopicus
c4u62D_ viral protein Chain: D: structural protein vp1; trichodysplasia spinulosa-associated polyomavirus (tspyv) vp1 in2 complex with 3'-sialyllactose
c5bonC_ hydrolase Chain: C: probable 8-oxo-dgtp diphosphatase nudt15; crystal structure of human nudt15 (mth2)
c5cnlA_ protein transport Chain: A: icml-like; crystal structure of an icml-like type iv secretion system protein2 (lpg0120) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 at 2.65 a resolution
c5a9gB_ oxidoreductase Chain: B: manganese superoxide dismutase; manganese superoxide dismutase from sphingobacterium sp. t2
c5a0sA_ hydrolase Chain: A: zinc metalloprotease zmp1; apo-structure of metalloprotease zmp1 variant e143a from2 clostridium difficile
c4z89J_ rim-binding protein Chain: J: rim-binding protein, isoform f; sh3-ii of drosophila rim-binding protein bound to a cacophony derived2 peptide
c4uw8F_ viral protein Chain: F: l-shaped tail fiber protein; structure of the carboxy-terminal domain of the2 bacteriophage t5 l-shaped tail fiber with its intra-3 molecular chaperone domain
c5c0vA_ rna binding protein Chain: A: la-related protein 1; structure of the larp1-unique domain dm15
c5a61A_ hydrolase Chain: A: inorganic triphosphatase; crystal structure of full-length e. coli ygif in complex2 with tripolyphosphate and two manganese ions.
c4uhpA_ hydrolase Chain: A: large component of pyocin ap41; crystal structure of the pyocin ap41 dnase-immunity complex
c5buzB_ transport protein Chain: B: putative vacuolar protein sorting-associated protein; crystal structure of a complex between the snare vam3 and the hops2 vps33-vps16 subcomplex from chaetomium thermophilum
c4xaaA_ oxidoreductase Chain: A: putative oxygenase; crystal structure of avio1 from streptomyces viridochromogenes tue57
c5cozA_ structural genomics, unknown function Chain: A: uncharacterized protein; crystal structure of an uncharacterized protein (eubrec_2869) from2 eubacterium rectale atcc 33656 at 1.45 a resolution
c4xbzB_ oxidoreductase Chain: B: evdo1; crystal structure of evdo1 from micromonospora carbonacea var.2 aurantiaca
c5c5eH_ transcription Chain: H: kaic c-terminal peptide; structure of kaia dimer in complex with c-terminal kaic peptide at 2.82 a resolution
c4ywcA_ transcription regulator Chain: A: transcription factor myc3; crystal structure of myc3(5-242) fragment in complex with jaz9(218-2 239) peptide
c5c6gA_ cell cycle Chain: A: agr133cp; structural insights into the scc2-scc4 cohesin loader
c4uhpB_ hydrolase Chain: B: bacteriocin immunity protein; crystal structure of the pyocin ap41 dnase-immunity complex
c5c6gB_ cell cycle Chain: B: sister chromatid cohesion protein 2; structural insights into the scc2-scc4 cohesin loader
c2mnjA_ protein binding Chain: A: tpr repeat-containing protein associated with hsp90; nmr solution structure of the yeast pih1 and tah1 c-terminal domains2 complex
c4d47D_ transferase Chain: D: levansucrase; x-ray structure of the levansucrase from erwinia amylovora
c4wn5A_ transcription Chain: A: hypoxia-inducible factor 3-alpha; crystal structure of the c-terminal per-arnt-sim (pasb) of human hif-2 3alpha9 bound to 18:1-1-monoacylglycerol
c4uf2A_ viral protein Chain: A: antiapoptotic membrane protein; deerpox virus dpv022 in complex with bax bh3
c3ja85_ hydrolase Chain: 5: minichromosome maintenance 5; cryo-em structure of the mcm2-7 double hexamer
c5buzC_ transport protein Chain: C: snap receptor-like protein; crystal structure of a complex between the snare vam3 and the hops2 vps33-vps16 subcomplex from chaetomium thermophilum
c4xabA_ oxidoreductase Chain: A: evdo2; crystal structure of evdo2 from micromonospora carbonacea var.2 aurantiaca
c4xkjA_ oxidoreductase Chain: A: d-lactate dehydrogenase; a novel d-lactate dehydrogenase from sporolactobacillus sp
c5bv0C_ transport protein Chain: C: snare domain; crystal structure of a complex between the snare nyv1 and the hops2 vps33-vps16 subcomplex from chaetomium thermophilum
c5c1mB_ signaling protein/antagonist Chain: B: nanobody 39; crystal structure of active mu-opioid receptor bound to the agonist2 bu72
c5c33B_ contractile protein Chain: B: ryanodine receptor 2; crystal structure of mouse ryanodine receptor 2 spry1 domain
c5ce7A_ transcription Chain: A: ctd kinase subunit gamma; structure of a non-canonical cid of ctk3
c3ja86_ hydrolase Chain: 6: minichromosome maintenance 6; cryo-em structure of the mcm2-7 double hexamer
c4u49B_ lyase Chain: B: pectate lyase; crystal structure of pectate lyase pel3 from pectobacterium2 carotovorum with two monomers in the a.u
c5a63C_ hydrolase Chain: C: gamma-secretase subunit aph-1a; cryo-em structure of the human gamma-secretase complex at 3.42 angstrom resolution.
c5buvC_ isomerase Chain: C: putative epimerase; x-ray structure of wbca from yersinia enterocolitica
c3ja82_ hydrolase Chain: 2: minichromosome maintenance 2; cryo-em structure of the mcm2-7 double hexamer
c5bq3A_ transport protein Chain: A: rhamnose abc transporter, rhamnose-binding protein; crystal structure of a sugar abc transporter (actodo_00688) from2 actinomyces odontolyticus atcc 17982 at 2.60 a resolution
c4qhuC_ immune system Chain: C: interleukin-17a; crystal structure of il-17a/fab6785 complex
c2mpjA_ nucleotide binding protein Chain: A: recql4-helicase-like protein; nmr structure of xenopus recq4 zinc knuckle
c5c0xK_ hydrolase/rna Chain: K: exosome complex exonuclease rrp6; structure of a 12-subunit nuclear exosome complex bound to structured2 rna
c4xpmB_ protein binding Chain: B: uncharacterized protein ycr075w-a; crystal structure of ego-tc
c5a63D_ hydrolase Chain: D: gamma-secretase subunit pen-2; cryo-em structure of the human gamma-secretase complex at 3.42 angstrom resolution.
c4xpmA_ protein binding Chain: A: protein meh1; crystal structure of ego-tc
c4ywcD_ transcription regulator Chain: D: protein tify 7; crystal structure of myc3(5-242) fragment in complex with jaz9(218-2 239) peptide
c4ywcC_ transcription regulator Chain: C: protein tify 7; crystal structure of myc3(5-242) fragment in complex with jaz9(218-2 239) peptide
c4z8aA_ rim-binding protein Chain: A: rim-binding protein, isoform f; sh3-iii of drosophila rim-binding protein bound to a cacophony derived2 peptide
c5a63A_ hydrolase Chain: A: nicastrin; cryo-em structure of the human gamma-secretase complex at 3.42 angstrom resolution.
c3ja84_ hydrolase Chain: 4: minichromosome maintenance 4; cryo-em structure of the mcm2-7 double hexamer
c5aj1A_ structural protein Chain: A: swi/snf-related matrix-associated actin-dependent solution structure of the smarc domain
c3ja83_ hydrolase Chain: 3: minichromosome maintenance 3; cryo-em structure of the mcm2-7 double hexamer
c3ja87_ hydrolase Chain: 7: minichromosome maintenance 7; cryo-em structure of the mcm2-7 double hexamer
c5bvtA_ lipid binding protein Chain: A: epidermal fatty acid-binding protein; palmitate-bound pfabp5
c5a63B_ hydrolase Chain: B: presenilin-1; cryo-em structure of the human gamma-secretase complex at 3.42 angstrom resolution.


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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