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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Aug 01

Fold library idPDB HeaderMoleculeTitle
c4zr0A_ oxidoreductase Chain: A: ceramide very long chain fatty acid hydroxylase scs7; full length scs7p (only hydroxylase domain visible)
c4s3lA_ cell adhesion Chain: A: major pilin protein; crystal structure of major pilin protein pitb from type ii pilus of2 streptococcus pneumoniae
c4z7fD_ transport protein Chain: D: folate ecf transporter; crystal structure of folt bound with folic acid
c3x43F_ transferase Chain: F: o-ureido-l-serine synthase; crystal structure of o-ureido-l-serine synthase
c4zciA_ gtp-binding protein Chain: A: gtp-binding protein typa/bipa; crystal structure of escherichia coli gtpase bipa/typa
c4ziaE_ transcription Chain: E: signal transducer and activator of transcription 3; crystal structure of stat3 n-terminal domain
c5bt9B_ oxidoreductase Chain: B: uncharacterized protein brcaa.00010.a; crystal structure of folm alternative dihydrofolate reductase 1 from2 brucella canis complexed with nadp
c4y4qA_ hydrolase Chain: A: sortase, srtb family; crystal structure of sortase b from type ii pilus of streptococcus2 pneumoniae
c4z5pB_ oxidoreductase Chain: B: cytochrome p450 hydroxylase; crystal structure of the lnma cytochrome p450 hydroxylase from the2 leinamycin biosynthetic pathway of streptomyces atroolivaceus s-1403 at 1.9 a resolution
c4xz5A_ lyase Chain: A: carbonic anhydrase, alpha family; structure of the thermostable alpha-carbonic anydrase from2 thiomicrospira crunogena xcl-2 gammaproteobacterium
c5c0wK_ hydrolase/rna Chain: K: exosome complex exonuclease rrp6; structure of a 12-subunit nuclear exosome complex bound to single-2 stranded rna substrates
c2n1eF_ protein fibril Chain: F: max1 peptide; max1 peptide fibril
c4xesA_ signaling protein, hydrolase Chain: A: neurotensin receptor type 1, endolysin chimera; structure of active-like neurotensin receptor
c4zcfA_ hydrolase-dna complex Chain: A: restriction endonuclease ecop15i, modification subunit; structural basis of asymmetric dna methylation and atp-triggered long-2 range diffusion by ecop15i
c2mwqA_ plant protein Chain: A: oxygen-evolving enhancer protein 3, chloroplastic; solution structure of psbq from spinacia oleracea
c4zwjC_ signaling protein Chain: C: chimera protein of human rhodopsin, mouse s-arrestin, and crystal structure of rhodopsin bound to arrestin by femtosecond x-ray2 laser
c4rbwB_ antimicrobial protein Chain: B: defensin-5; crystal structure of human alpha-defensin 5, hd5 (thr7arg glu21arg2 mutant)
c4u3fV_ oxidoreductase/oxidoreductase inhibitor Chain: V: cytochrome b-c1 complex subunit rieske, mitochondrial; cytochrome bc1 complex from chicken with designed inhibitor bound
c4qidB_ membrane protein Chain: B: bacteriorhodopsin-i; crystal structure of haloquadratum walsbyi bacteriorhodopsin
c4zuzA_ phosphate binding protein Chain: A: sidc; sidc 1-871
c2n1eE_ protein fibril Chain: E: max1 peptide; max1 peptide fibril
c5a0uA_ lyase Chain: A: choline trimethylamine lyase; structure of cutc choline lyase choline bound form from klebsiella2 pneumoniae.
c4qrdA_ ligase/ligase inhibitor Chain: A: methionyl-trna synthetase; structure of methionyl-trna synthetase in complex with n-(1h-2 benzimidazol-2-ylmethyl)-n'-(2,4-dichlorophenyl)-6-(morpholin-4-yl)-3 1,3,5-triazine-2,4-diamine
c5bwjC_ signaling protein Chain: C: sensory transduction histidine kinase, putative; structural characterization and modeling of the borrelia burgdorferi2 hybrid histidine kinase hk1 periplasmic sensor
c4u3sB_ protein binding Chain: B: cellulosomal scaffoldin; crystal structure of coh3scab-xdoc_m1scaa complex: a n-terminal2 interface mutant of type ii cohesin-x-dockerin complex from3 acetivibrio cellulolyticus
c4u3fI_ oxidoreductase/oxidoreductase inhibitor Chain: I: cytochrome b-c1 complex subunit rieske, mitochondrial; cytochrome bc1 complex from chicken with designed inhibitor bound
c4rl8A_ membrane protein Chain: A: protein involved in meta-pathway of phenol degradation-like crystal structure of the cog4313 outer membrane channel from2 pseudomonas putida f1
c2rujA_ protein binding Chain: A: stress-activated map kinase-interacting protein 1; solution structure of mtsl spin-labeled schizosaccharomyces pombe sin12 crim domain
c4rbwA_ antimicrobial protein Chain: A: defensin-5; crystal structure of human alpha-defensin 5, hd5 (thr7arg glu21arg2 mutant)
c4xmeA_ transport protein Chain: A: nitrophorin-7; crystal structure of nitrophorin 7 from rhodnius prolixus at ph 7.82 complexed with no
c4yypB_ transferase Chain: B: scl-interrupting locus protein; crystal structure of human plk4-pb3 in complex with stil-cc
c2n1eG_ protein fibril Chain: G: max1 peptide; max1 peptide fibril
c4zcfC_ hydrolase-dna complex Chain: C: restriction endonuclease ecop15i, restriction subunit; structural basis of asymmetric dna methylation and atp-triggered long-2 range diffusion by ecop15i
c4rbwD_ antimicrobial protein Chain: D: defensin-5; crystal structure of human alpha-defensin 5, hd5 (thr7arg glu21arg2 mutant)
c4xbiA_ chaperone Chain: A: clpb protein, putative,green fluorescent protein; structure of a malarial protein involved in proteostasis
c5cd6C_ unknown function Chain: C: tpr-domain containing protein; crystal structure of a tpr-domain containing protein (bdi_1685) from2 parabacteroides distasonis atcc 8503 at 2.26 a resolution
c5a3aA_ transferase Chain: A: sir2 family protein; crystal structure of the adp-ribosylating sirtuin (sirtm)2 from streptococcus pyogenes (apo form)
c3wxbB_ oxidoreductase activator Chain: B: uncharacterized protein; crystal structure of nadph bound carbonyl reductase from chicken fatty2 liver
c4rbwC_ antimicrobial protein Chain: C: defensin-5; crystal structure of human alpha-defensin 5, hd5 (thr7arg glu21arg2 mutant)
c4qicC_ signaling protein/dna binding protein Chain: C: sensory transduction regulatory protein, anti-anti-sigma co-crystal structure of anti-anti-sigma factor phyr complexed with2 anti-sigma factor nepr from bartonella quintana
c2n1eD_ protein fibril Chain: D: max1 peptide; max1 peptide fibril
c2n1eC_ protein fibril Chain: C: max1 peptide; max1 peptide fibril
c4qicB_ signaling protein/dna binding protein Chain: B: anti-sigma factor nepr; co-crystal structure of anti-anti-sigma factor phyr complexed with2 anti-sigma factor nepr from bartonella quintana
c4zwjA_ signaling protein Chain: A: chimera protein of human rhodopsin, mouse s-arrestin, and crystal structure of rhodopsin bound to arrestin by femtosecond x-ray2 laser
c2n1eA_ protein fibril Chain: A: max1 peptide; max1 peptide fibril
c5bu6B_ hydrolase Chain: B: bpsb (pgab), poly-beta-1,6-n-acetyl-d-glucosamine n- structure of bpsb deaceylase domain from bordetella bronchiseptica
c2n1eB_ protein fibril Chain: B: max1 peptide; max1 peptide fibril
c5bszA_ transferase Chain: A: n-methyltransferase; x-ray structure of the sugar n-methyltransferase keds8 from2 streptoalloteichus sp atcc 53650
c5a35A_ transport protein Chain: A: glycine cleavage system h protein; crystal structure of glycine cleavage protein h-like (gcvh-l)2 from streptococcus pyogenes
c4qmdB_ cell adhesion Chain: B: envoplakin; crystal structure of human envoplakin plakin repeat domain
c2n1eH_ protein fibril Chain: H: max1 peptide; max1 peptide fibril
c5cjjA_ transferase Chain: A: phosphoribosylglycinamide formyltransferase; the crystal structure of phosphoribosylglycinamide formyltransferase2 from campylobacter jejuni subsp. jejuni nctc 11168
c5c0wJ_ hydrolase/rna Chain: J: exosome complex exonuclease dis3; structure of a 12-subunit nuclear exosome complex bound to single-2 stranded rna substrates
c2n21A_ hydrolase/dna Chain: A: atp-dependent rna helicase dhx36; solution structure of the quadruplex-n-terminal domain of rhau
c4rbxA_ antimicrobial protein Chain: A: defensin-5; crystal structure of human alpha-defensin 5, hd5 (glu21arg mutant)
c2n16A_ hydrolase Chain: A: atp-dependent rna helicase dhx36; solution structure of the n-terminal domain of rhau
c4u3kA_ cell cycle Chain: A: rho gtpase-activating protein rgd1; crystal structure of the rhogap domain of rgd1p at 2.19 angstroms2 resolution


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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