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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Jul 25

Fold library idPDB HeaderMoleculeTitle
c4u33F_ transferase Chain: F: alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase; structure of mtb glge bound to maltose
c3ja7L_ viral protein Chain: L: portal protein gp20; cryo-em structure of the bacteriophage t4 portal protein assembly at2 near-atomic resolution
c4pl6A_ transcription Chain: A: at1g02740; structure of the chromodomain of mrg2 in complex with h3k4me3
c5a2tG_ viral protein Chain: G: coat protein; the molecular basis for flexibility in the flexible2 filamentous plant viruses
c4d7uB_ oxidoreductase Chain: B: endoglucanase ii; the structure of the catalytic domain of nclpmo9c from the2 filamentous fungus neurospora crassa
c4tqvO_ transport protein Chain: O: algs; crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
c4rflB_ oxidoreductase Chain: B: glycerol-1-phosphate dehydrogenase [nad(p)+]; crystal structure of g1pdh with nadph from methanocaldococcus2 jannaschii
c4s3hD_ unknown function Chain: D: mdb1; crystal structure of s. pombe mdb1 fha domain
c5a49I_ protein binding Chain: I: maternal effect protein oskar; crystal structure of the lotus domain (aa 139-222) of2 drosophila oskar in c222
c4yhwA_ splicing Chain: A: u4/u6 small nuclear ribonucleoprotein prp3; yeast prp3 (296-469) in complex with fragment of u4/u6 di-snrna
c5cawA_ signaling protein Chain: A: e3 ubiquitin-protein ligase parkin; structure of pediculus humanus parkin bound to phospho-ubiquitin
c4ua2B_ dna binding protein Chain: B: regulatory protein; crystal structure of dual function transcriptional regulator merr from2 bacillus megaterium mb1
c4usxB_ transport protein Chain: B: trimeric autotransporter adhesin; the structure of the c-terminal yada-like domain of2 bpsl2063 from burkholderia pseudomallei
c4z2yA_ transferase Chain: A: calo6; crystal structure of methyltransferase calo6
c4wt5A_ chaperone Chain: A: rubisco accumulation factor 1, isoform 2; the c-terminal domain of rubisco accumulation factor 1 from2 arabidopsis thaliana, crystal form ii
c5a5bY_ hydrolase Chain: Y: 26s proteasome complex subunit sem1; structure of the 26s proteasome-ubp6 complex
c4tqvJ_ transport protein Chain: J: algm2; crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
c5cd2A_ hydrolase Chain: A: endo-1,4-d-glucanase; the crystal structure of endo-1,4-d-glucanase from vibrio fischeri2 es114
c4ye4H_ viral protein/immune system Chain: H: heavy chain human antibody hj16; crystal structure of neutralizing antibody hj16 in complex with hiv-12 gp120
c2n2qA_ antifungal protein Chain: A: defensin-like protein 1; nmr solution structure of hsafp1
c2msoA_ toxin Chain: A: conotoxin gm9.1; solution study of cgm9a
c4zigB_ apoptosis Chain: B: bh3-interacting domain death agonist; crystal structure of core/latch dimer of bax in complex with2 bidbh3mini
c4xtiA_ oxidoreductase Chain: A: inosine-5'-monophosphate dehydrogenase,inosine-5'- structure of imp dehydrogenase of ashbya gossypii with imp bound to2 the active site
c4ry2A_ transport protein/hydrolase Chain: A: abc-type bacteriocin transporter; crystal structure of the peptidase-containing abc transporter pcat1
c4xsxJ_ transcription/antibiotic Chain: J: dna-directed rna polymerase subunit beta'; crystal structure of cbr 703 bound to escherichia coli rna polymerase2 holoenzyme
c2ms3A_ electron transport Chain: A: anaerobic nitric oxide reductase flavorubredoxin; the nmr structure of the rubredoxin domain of the no reductase2 flavorubredoxin from escherichia coli
c4tqvI_ transport protein Chain: I: algm1; crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
c4zu2A_ hydrolase Chain: A: putative isohexenylglutaconyl-coa hydratase; pseudomonas aeruginosa atue
c4wt3A_ chaperone Chain: A: rubisco accumulation factor 1, isoform 2; the n-terminal domain of rubisco accumulation factor 1 from2 arabidopsis thaliana
c5c8gB_ gene regulation Chain: B: pp-brd20; crystal structure analysis of pp-brd20 from tb427tmp complexed with2 bi-2536
c4qlpB_ hydrolase/protein binding Chain: B: immunity factor ift; atomic structure of tuberculosis necrotizing toxin (tnt) complexed2 with its immunity factor ift
c2msqA_ toxin Chain: A: conotoxin cbru9a; solution study of cbru9a
c5by3A_ sugar binding protein Chain: A: btgh115a; a novel family gh115 4-o-methyl-alpha-glucuronidase, btgh115a, with2 specificity for decorated arabinogalactans
c5ci5B_ sugar binding protein Chain: B: extracellular solute-binding protein family 1; crystal structure of an abc transporter solute binding protein from2 thermotoga lettingae tmo (tlet_1705, target efi-510544) bound with3 alpha-d-tagatose
c5chsA_ viral protein,transferase Chain: A: rna-directed rna polymerase l; n-terminal domain of the vesicular stomatitis virus l protein
c5a48B_ protein binding Chain: B: maternal effect protein oskar; crystal structure of the lotus domain (aa 139-240) of drosophila2 oskar in p65
c4yfmA_ hydrolase Chain: A: beta-lactamase; class a beta-lactamase from mycobacterium abscessus
c4qqqA_ toxin Chain: A: pneumolysin; crystal structure of pneumolysin from streptococcus pneumoniae, in2 complex with mannose as a component of cell membrane
c5a2fA_ cell adhesion Chain: A: cd166 antigen; two membrane distal igsf domains of cd166
c4zieC_ apoptosis Chain: C: bcl-2-like protein 11; crystal structure of core/latch dimer of bax in complex with bimbh3
c4qegA_ structural protein Chain: A: titin; crystal structure of domain i10 from titin (space group p41)
c5a2eA_ immune system Chain: A: t-cell differentiation antigen cd6; extracellular srcr domains of human cd6
c5a4aA_ rna-binding protein Chain: A: maternal effect protein oskar; crystal structure of the osk domain of drosophila oskar


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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