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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Apr 25

Fold library idPDB HeaderMoleculeTitle
c4cvkA_ ligase Chain: A: udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine pamurf in complex with udp-murnac-tripeptide (mdap)
c4s2tP_ hydrolase/hydrolase inhibitor Chain: P: protein app-1; crystal structure of x-prolyl aminopeptidase from caenorhabditis2 elegans: a cytosolic enzyme with a di-nuclear active site
c4ymuC_ protein binding/transport protein Chain: C: abc-type amino acid transport system, permease component; crystal structure of an amino acid abc transporter complex with2 arginines and atps
c5aj3b_ ribosome Chain: B: mitoribosomal protein us2m, mrps2; structure of the small subunit of the mammalian mitoribosome
c4z7xA_ oxidoreductase Chain: A: mdba; mdba protein, a thiol-disulfide oxidoreductase from actinomyces oris.
c4tpvA_ blood clotting Chain: A: platelet inhibitor; crystal structure of hookworm platelet inhibitor
c5aj3R_ ribosome Chain: R: mitoribosomal protein bs18m, mrps18c; structure of the small subunit of the mammalian mitoribosome
c5aj3g_ ribosome Chain: G: mitoribosomal protein us7m, mrps7; structure of the small subunit of the mammalian mitoribosome
c4ymxB_ transport protein Chain: B: abc-type amino acid transport system, periplasmic crystal structure of the substrate binding protein of an amino acid2 abc transporter
c4xruE_ protein binding Chain: E: rnl; structure of pnkp1/rnl/hen1 complex
c4ymuJ_ protein binding/transport protein Chain: J: abc-type polar amino acid transport system, atpase crystal structure of an amino acid abc transporter complex with2 arginines and atps
c4xdzB_ oxidoreductase Chain: B: ketol-acid reductoisomerase; holo structure of ketol-acid reductoisomerase from ignisphaera2 aggregans
c4xrpF_ protein binding Chain: F: hen1; structure of the pnkp1/rnl/hen1 rna repair complex
c5aj3a_ ribosome Chain: A: mitoribosomal 12s rrna; structure of the small subunit of the mammalian mitoribosome
c4yayA_ membrane protein Chain: A: soluble cytochrome b562,type-1 angiotensin ii receptor; xfel structure of human angiotensin receptor
c4yn7A_ transcription Chain: A: yfir; non-oxidized yfir
c2mxqA_ antimicrobial protein Chain: A: paneth cell-specific alpha-defensin 1; the solution structure of defa1, a highly potent antimicrobial peptide2 from the horse
c5aj3p_ ribosome Chain: P: mitoribosomal protein bs16m, mrps16; structure of the small subunit of the mammalian mitoribosome
c5aj3o_ ribosome Chain: O: mitoribosomal protein us15m, mrps15; structure of the small subunit of the mammalian mitoribosome
c2n0yB_ transcription/viral protein Chain: B: non-structural protein ns-s; nmr structure of the complex between the c-terminal domain of the rift2 valley fever virus protein nss and the ph domain of the tfb1 subunit3 of tfiih
c4xrpA_ protein binding Chain: A: pnkp1; structure of the pnkp1/rnl/hen1 rna repair complex
c5aj3h_ ribosome Chain: H: structure of the small subunit of the mammalian mitoribosome
c4xdyB_ oxidoreductase Chain: B: ketol-acid reductoisomerase; structure of nadh-preferring ketol-acid reductoisomerase from an2 uncultured archean
c2muiA_ unknown function Chain: A: upf0301 protein algh; solution structure of the algh protein from pseudomonas aeruginosa,2 pa0405, upf0301
c4rlcA_ transport protein Chain: A: outer membrane porin f; crystal structure of the n-terminal beta-barrel domain of pseudomonas2 aeruginosa oprf
c4xq7A_ transferase Chain: A: 2'-5'-oligoadenylate synthase-like protein; the crystal structure of the oas-like domain (old) of human oasl
c4ygsA_ hydrolase Chain: A: hydrolase; crystal structure of had phosphatase from thermococcus onnurineus
c5aj3m_ ribosome Chain: M: structure of the small subunit of the mammalian mitoribosome
c4rl9A_ membrane protein Chain: A: carbapenem-associated resistance protein; crystal structure of acinetobacter baumannii caro1
c4z48B_ structural biology, unknown function Chain: B: uncharacterized protein; crystal structure of a duf1329 family protein (despig_00262) from2 desulfovibrio piger atcc 29098 at 1.75 a resolution
c4z04A_ lyase Chain: A: glyoxalase/bleomycin resistance /dioxygenase superfamily crystal structure of a probable lactoylglutathione lyase from brucella2 melitensis in complex with glutathione
c4y30B_ transferase Chain: B: protein arginine n-methyltransferase 6; crystal structure of human protein arginine methyltransferase prmt62 bound to sah and epz020411
c5aj3c_ ribosome Chain: C: mitoribosomal protein us3m, mrps24; structure of the small subunit of the mammalian mitoribosome
c5aj3n_ ribosome Chain: N: mitoribosomal protein us14m, mrps14; structure of the small subunit of the mammalian mitoribosome
c5aj3i_ ribosome Chain: I: mitoribosomal protein us9m, mrps9; structure of the small subunit of the mammalian mitoribosome
c5aj3j_ ribosome Chain: J: mitoribosomal protein us10m, mrps10; structure of the small subunit of the mammalian mitoribosome
c5aj3f_ ribosome Chain: F: mitoribosomal protein bs6m, mrps6; structure of the small subunit of the mammalian mitoribosome
c2mv7B_ protein binding/transferase Chain: B: histone-lysine n-methyltransferase, h3 lysine-79 specific; solution nmr structure of dot1l in complex with af9 (dot1l-af9)
c4p94A_ motor protein Chain: A: conserved flagellar protein f; the crystal structure of the soluble domain of sulfolobus2 acidocaldarius flaf (residues 35-164)
c5aj3k_ ribosome Chain: K: mitoribosomal protein us11m, mrps11; structure of the small subunit of the mammalian mitoribosome
c2n0pA_ structural genomics, unknown function Chain: A: uncharacterized protein aq_1974; solution structure of aquifex aeolicus aq1974
c5ajaB_ viral protein Chain: B: vpx protein; crystal structure of mandrill samhd1 (amino acid residues 1-114)2 bound to vpx isolated from mandrill and human dcaf1 (amino3 acid residues 1058-1396)
c4wpzA_ oxidoreductase Chain: A: cytochrome p450; crystal structure of cytochrome p450 cyp107w1 from streptomyces2 avermitilis
c5ajaC_ viral protein Chain: C: sam domain and hd domain-containing protein; crystal structure of mandrill samhd1 (amino acid residues 1-114)2 bound to vpx isolated from mandrill and human dcaf1 (amino3 acid residues 1058-1396)
c5aj3d_ ribosome Chain: D: structure of the small subunit of the mammalian mitoribosome


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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