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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Apr 04

Fold library idPDB HeaderMoleculeTitle
c4wseA_ transferase Chain: A: putative poly(a) polymerase catalytic subunit; crystal structure of the mimivirus polyadenylate synthase
c3j9qc_ structural protein Chain: C: sheath; atomic structures of a bactericidal contractile nanotube in its pre-2 and post-contraction states
c4ri1A_ transferase Chain: A: udp-4-amino-4,6-dideoxy-n-acetyl-beta-l-altrosamine n- crystal structure of helicobacter pylori pseudaminic acid biosynthesis2 n -acetyltransferase pseh complex with acetyl-coa
c4oalB_ oxidoreductase Chain: B: cytokinin dehydrogenase 4; crystal structure of maize cytokinin oxidase/dehydrogenase 4 (zmcko4)2 in complex with phenylurea inhibitor cppu in alternative spacegroup
c4p37A_ transferase Chain: A: putative poly(a) polymerase catalytic subunit; crystal structure of the megavirus polyadenylate synthase
c4qdiA_ ligase Chain: A: udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase; crystal structure ii of murf from acinetobacter baumannii
c4xtnJ_ membrane protein Chain: J: sodium pumping rhodopsin; crystal structure of the light-driven sodium pump kr2 in the2 pentameric red form, ph 4.9
c4xgcF_ dna binding protein Chain: F: origin recognition complex subunit 6; crystal structure of the eukaryotic origin recognition complex
c3j9qF_ structural protein Chain: F: sheath; atomic structures of a bactericidal contractile nanotube in its pre-2 and post-contraction states
c4d3sA_ oxidoreductase Chain: A: imine reductase; imine reductase from nocardiopsis halophila
c4twmA_ plant protein Chain: A: dioscorin 5; crystal structure of dioscorin from dioscorea japonica
c4yhcA_ structural protein Chain: A: sterol regulatory element-binding protein cleavage- crystal structure of the wd40 domain of scap from fission yeast
c4q5rC_ transferase Chain: C: glutathione s-transferase; crystal structure of glutathione s-transferase bla g 5
c4xnwC_ transport protein Chain: C: p2y purinoceptor 1,rubredoxin,p2y purinoceptor 1; the human p2y1 receptor in complex with mrs2500
c4yicA_ transport protein Chain: A: trap transporter solute binding protein; crystal structure of a trap transporter solute binding protein2 (ipr025997) from bordetella bronchiseptica rb50 (bb0280, target efi-3 500035) with bound picolinic acid
c4xgcA_ dna binding protein Chain: A: origin recognition complex subunit 1; crystal structure of the eukaryotic origin recognition complex
c4d3fB_ oxidoreductase Chain: B: imine reductase; bcsired from bacillus cereus in complex with nadph
c4ys8B_ transferase Chain: B: 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase (ispd) from burkholderia thailandensis
c4qq1A_ protein binding Chain: A: transferrin-binding protein 2; crystal structure of the isotype 1 transferrin binding protein b2 (tbpb) from serogroup b neisseria meningitidis
c4wikA_ transcription Chain: A: splicing factor, proline- and glutamine-rich; human splicing factor, construct 2
c4pcwD_ metal binding protein Chain: D: filaggrin; crystal structure of the n-terminal domain of human profilaggrin at2 2.2 a resolution
c2mvjA_ protein binding Chain: A: stage v sporulation protein m; structure of stage v sporulation protein m (spovm) p9a mutant
c4d7eA_ oxidoreductase Chain: A: l-lys monooxygenase; an unprecedented nadph domain conformation in lysine2 monooxygenase nbtg from nocardia farcinica
c4yv7A_ solute-binding protein Chain: A: periplasmic binding protein/laci transcriptional regulator; crystal structure of an abc transporter solute binding protein2 (ipr025997) from mycobacterium smegmatis (msmei_3018, target efi-3 511327) with bound glycerol
c4xkyC_ lyase Chain: C: dihydrodipicolinate synthase; structure of dihydrodipicolinate synthase from the commensal bacterium2 bacteroides thetaiotaomicron at 2.1 a resolution
c4q5fD_ transferase Chain: D: glutathione s-transferase 1; crystal structure of the glutathione s-transferase from ascaris2 lumbricoides
c4ytjC_ transferase Chain: C: cals13; crystal structure of sugar aminotransferase cals13 from micromonospora2 echinospora
c4ux7A_ hydrolase Chain: A: putative peptidase c60b, sortase b; structure of a clostridium difficile sortase
c4ywjB_ oxidoreductase Chain: B: 4-hydroxy-tetrahydrodipicolinate reductase; crystal structure of 4-hydroxy-tetrahydrodipicolinate reductase (htpa2 reductase) from pseudomonas aeruginosa
c4xgcB_ dna binding protein Chain: B: origin recognition complex subunit 2; crystal structure of the eukaryotic origin recognition complex
c4wxuA_ protein binding Chain: A: myocilin; crystal structure of the selenomthionine incorporated myocilin2 olfactomedin domain e396d variant.
c4q5qA_ transferase Chain: A: glutathione s-transferase; crystal structure of the glutathione s-transferase der p 8
c4wijA_ transcription Chain: A: splicing factor, proline- and glutamine-rich; human splicing factor, construct 1
c2mn2A_ antitoxin Chain: A: ymob; 3d structure of ymob, a modulator of biofilm formation
c4q5nA_ transferase Chain: A: gluthatione s-transferase blo t 8 isoform; crystal structure of the gluthatione s-transferase blo t 8
c2mvhA_ protein binding Chain: A: stage v sporulation protein m; structure determination of stage v sporulation protein m (spovm)
c4xgcC_ dna binding protein Chain: C: origin recognition complex subunit 3; crystal structure of the eukaryotic origin recognition complex
c5ahwC_ signaling protein Chain: C: universal stress protein; crystal structure of universal stress protein msmeg_3811 in2 complex with camp
c5af0B_ unknown protein Chain: B: maelstrom; mael domain from bombyx mori maelstrom
c4yczB_ structural protein Chain: B: nup85; y-complex hub (nup85-nup120-nup145c-sec13 complex) from m. thermophila2 (a.k.a. t. heterothallica)
c4ymeA_ lyase Chain: A: sensory box/ggdef family protein; crystal structure of a sensory box/ggdef family protein (cc_0091) from2 caulobacter crescentus cb15 at 1.40 a resolution (psi community3 target, shapiro)
c4yy8B_ unknown function Chain: B: kelch protein; crystal structure analysis of kelch protein from plasmodium falciparum
c2mxwA_ unknown function Chain: A: rna-binding protein 10; solution nmr structure of the ocre domain of rbm10
c4xgcD_ dna binding protein Chain: D: origin recognition complex subunit 4; crystal structure of the eukaryotic origin recognition complex
c4cvwD_ hydrolase/hydrolase inhibitor Chain: D: limit dextrinase inhibitor; structure of the barley limit dextrinase-limit dextrinase2 inhibitor complex
c4rlrA_ electron transport Chain: A: cytochrome c, 1 heme-binding site; structure of monoheme cytochrome pcch from geobacter sulfurreducens
c4uf7A_ viral protein/immune system Chain: A: glycoprotein; ghanaian henipavirus (gh-m74a) attachment glycoprotein in2 complex with human ephrinb2
c4yl8B_ protein binding Chain: B: protein crumbs; crystal structure of the crumbs/moesin complex
c4yl5A_ transferase Chain: A: putative phosphomethylpyrimidine kinase; structure of a putative phosphomethylpyrimidine kinase from2 acinetobacter baumannii
c4yczA_ structural protein Chain: A: fusion protein of sec13 and nup145c; y-complex hub (nup85-nup120-nup145c-sec13 complex) from m. thermophila2 (a.k.a. t. heterothallica)
c2mtpB_ protein binding/cell adhesion Chain: B: integrin alpha-iib; the structure of filamin repeat 21 bound to integrin
c4yczC_ structural protein Chain: C: nup120; y-complex hub (nup85-nup120-nup145c-sec13 complex) from m. thermophila2 (a.k.a. t. heterothallica)
c4rvqA_ protein binding Chain: A: pre-mrna splicing helicase-like protein; pwi-like domain of chaetomium thermophilum brr2
c4xgcE_ dna binding protein Chain: E: origin recognition complex subunit 5; crystal structure of the eukaryotic origin recognition complex


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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