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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Mar 28

Fold library idPDB HeaderMoleculeTitle
c4v0uK_ motor protein/hydrolase Chain: K: protein phosphatase 1 regulatory subunit 15b; the crystal structure of ternary pp1g-ppp1r15b and g-actin complex
c4p6dA_ lyase Chain: A: 3,4-dihydroxy-2-butanone 4-phosphate synthase; structure of ribb complexed with po4 ion
c4pxgA_ hydrolase Chain: A: type-2 restriction enzyme sau3ai; crystal structure of typeii restriction enzyme sau3ai
c4pxvC_ sugar binding protein Chain: C: chitinase a; crystal structure of lysm domain from pteris ryukyuensis chitinase a
c5af6J_ signaling protein Chain: J: trabid; structure of lys33-linked diub bound to trabid nzf1
c4cvcA_ oxidoreductase Chain: A: alcohol dehydrogenase; crystal structure of quinone-dependent alcohol dehydrogenase from2 pseudogluconobacter saccharoketogenenes with zinc in the active site
c4yqyA_ oxidoreductase Chain: A: putative dehydrogenase; crystal structure of a putative dehydrogenase from sulfitobacter sp.2 (cog1028) (target efi-513936) in its apo form
c3ww0B_ transport protein Chain: B: protein hikeshi; crystal structure of f97a mutant, a new nuclear transport receptor of2 hsp70
c4xvcG_ hydrolase Chain: G: esterase e40; crystal structure of an esterase from the bacterial hormone-sensitive2 lipase (hsl) family
c4v0vB_ hydrolase/hydrolase regulator Chain: B: protein phosphatase 1 regulatory subunit 15b; the crystal structure of mouse pp1g in complex with2 truncated human ppp1r15b (631-660)
c4v0xB_ hydrolase/hydrolase regulator Chain: B: protein phosphatase 1 regulatory subunit 15b; the crystal structure of mouse pp1g in complex with2 truncated human ppp1r15b (631-684)
c4yqzD_ oxidoreductase Chain: D: putative oxidoreductase; crystal structure of a putative oxidoreductase from thermus2 thermophilus hb27 (tt_p0034, target efi-513932) in its apo form
c4xmmD_ transport protein/immune system Chain: D: nucleoporin nup85; structure of the yeast coat nucleoporin complex
c2mzyA_ iron binding protein Chain: A: probable fe(2+)-trafficking protein; 1h, 13c, and 15n chemical shift assignments and structure of probable2 fe(2+)-trafficking protein from burkholderia pseudomallei 1710b.
c2mg3A_ viral protein Chain: A: envelope glycoprotein gp41; nmr assignment and structure of a peptide derived from the membrane2 proximal external region of hiv-1 gp41 in the presence of3 dodecylphosphocholine micelles
c4u63A_ lyase Chain: A: dna photolyase; crystal structure of a bacterial class iii photolyase from2 agrobacterium tumefaciens at 1.67a resolution
c4v0uG_ motor protein/hydrolase Chain: G: protein phosphatase 1 regulatory subunit 15b; the crystal structure of ternary pp1g-ppp1r15b and g-actin complex
c5af6I_ signaling protein Chain: I: trabid; structure of lys33-linked diub bound to trabid nzf1
c2mzdB_ protein binding Chain: B: cellular tumor antigen p53; characterization of the p300 taz2-p53 tad2 complex and comparison with2 the p300 taz2-p53 tad1 complex
c4x96B_ transferase Chain: B: phosphatidylcholine-sterol acyltransferase; low resolution crystal structure of lecithin:cholesterol2 acyltransferase (lcat; residues 21-397)
c3wqbB_ hydrolase/chaperone Chain: B: open reading frame 2; crystal structure of aeromonas sobria serine protease (asp) and the2 chaperone (orf2) complex
c4yodA_ oxidoreductase Chain: A: thioredoxin-like protein; crystal structure of a thioredoxin-like protein (baccac_02376) from2 bacteroides caccae atcc 43185 at 1.90 a resolution
c4uw2A_ immune system Chain: A: csm1; crystal structure of csm1 in t.onnurineus
c4o60A_ de novo protein Chain: A: ank-n5c-317; structure of ankyrin repeat protein
c4pboA_ immune system Chain: A: c-reactive protein; crystal structure of zebrafish short-chain pentraxin protein without2 calcium ions
c4v0uI_ motor protein/hydrolase Chain: I: protein phosphatase 1 regulatory subunit 15b; the crystal structure of ternary pp1g-ppp1r15b and g-actin complex
c5aeoA_ immune system Chain: A: r. equi vapg protein; virulence-associated protein vapg from the intracellular2 pathogen rhodococcus equi
c4uw2D_ immune system Chain: D: csm1; crystal structure of csm1 in t.onnurineus
c4yo7A_ solute binding protein Chain: A: sugar abc transporter (sugar-binding protein); crystal structure of an abc transporter solute binding protein2 (ipr025997) from bacillus halodurans c-125 (bh2323, target efi-3 511484) with bound myo-inositol
c4cs6A_ transferase Chain: A: aminoglycoside adenyltransferase; crystal structure of aada - an aminoglycoside adenyltransferase
c4muoB_ dna binding protein Chain: B: uncharacterized protein ybib; the trpd2 enzyme from e.coli: ybib
c4xlgB_ hydrolase Chain: B: structure-specific endonuclease subunit slx4; c. glabrata slx1 in complex with slx4ccd.
c5aka2_ ribosome Chain: 2: 50s ribosomal protein l34; em structure of ribosome-srp-ftsy complex in closed state
c4v15B_ lyase Chain: B: d-threonine aldolase; crystal structure of d-threonine aldolase from alcaligenes2 xylosoxidans
c4xlgA_ hydrolase Chain: A: structure-specific endonuclease subunit slx1; c. glabrata slx1 in complex with slx4ccd.
c4xmnB_ protein transport Chain: B: nucleoporin nup145; structure of the yeast coat nucleoporin complex with a synthetic2 antibody
c4pwoA_ structural genomics Chain: A: dsba; crystal structure of dsba from the gram positive bacterium2 corynebacterium diphtheriae
c4xrvB_ metal binding protein Chain: B: periplasmic solute binding protein; structure of a zn abc transporter substrate binding protein from2 paracoccus denitrificans
c4s1kA_ viral protein Chain: A: polyhedrin; structure of uranotaenia sapphirina cypovirus (cpv17) polyhedrin at2 100 k
c4v0wD_ hydrolase/hydrolase regulator Chain: D: protein phosphatase 1 regulatory subunit 15b; the crystal structure of mouse pp1g in complex with2 truncated human ppp1r15b (631-669)
c4yokA_ unknown function Chain: A: putative flagellar protein flis; crystal structure of a duf3823 family protein (parmer_04126) from2 parabacteroides merdae atcc 43184 at 1.80 a resolution
c2mg1A_ viral protein Chain: A: transmembrane protein gp41; nmr assignment and structure of a peptide derived from the trans-2 membrane region of hiv-1 gp41 in the presence of3 hexafluoroisopropanol
c2mtdA_ protein binding Chain: A: decorin binding protein a; strcucture of decorin binding protein a from strain pbr of borrelia2 garinii
c2mg2A_ viral protein Chain: A: transmembrane protein gp41; nmr assignment and structure of a peptide derived from the membrane2 proximal external region of hiv-1 gp41 in the presence of3 hexafluoroisopropanol
c4v0uO_ motor protein/hydrolase Chain: O: protein phosphatase 1 regulatory subunit 15b; the crystal structure of ternary pp1g-ppp1r15b and g-actin complex
c4uu4A_ transport protein Chain: A: periplasmic lipopolysaccharide transport protein lpth; crystal structure of lpth, the lpta homologous periplasmic2 component of the conserved lipopolysaccharide transport3 device from pseudomonas aeruginosa
c3wsoA_ ligase Chain: A: f-box only protein 44; crystal structure of the skp1-fbg3 complex
c4s3nA_ transferase/rna Chain: A: 2'-5'-oligoadenylate synthase 3; crystal structure of human oas3 domain i in complex with dsrna
c5af6H_ signaling protein Chain: H: trabid; structure of lys33-linked diub bound to trabid nzf1
c4xmmE_ transport protein/immune system Chain: E: nucleoporin nup120; structure of the yeast coat nucleoporin complex
c4v0uE_ motor protein/hydrolase Chain: E: protein phosphatase 1 regulatory subunit 15b; the crystal structure of ternary pp1g-ppp1r15b and g-actin complex
c4uw2C_ immune system Chain: C: csm1; crystal structure of csm1 in t.onnurineus


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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