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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Mar 07

Fold library idPDB HeaderMoleculeTitle
c4yf1D_ hydrolase Chain: D: lmo0812 protein; 1.85 angstrom crystal structure of lmo0812 from listeria monocytogenes2 egd-e
c3ws1A_ hydrolase Chain: A: beta-lactamase; n288q-n321q mutant beta-lactamase derived from chromohalobacter sp.5602 (condition-1b)
c4uf6L_ hydrolase Chain: L: nuclear factor related to kappa-b-binding protein; uch-l5 in complex with ubiquitin-propargyl bound to an2 activating fragment of ino80g
c4wwvA_ hydrolase Chain: A: aminopeptidase from family m42; aminopeptidase apdkam598 from the archaeon desulfurococcus2 kamchatkensis
c4xvzB_ transferase Chain: B: mycinamicin iii 3''-o-methyltransferase; mycf mycinamicin iii 3'-o-methyltransferase in complex with mg
c4wqoD_ transcription Chain: D: cullin-2; structure of vhl-elob-eloc-cul2
c4ycgB_ cytokine Chain: B: growth/differentiation factor 2; pro-bone morphogenetic protein 9
c4wa0A_ cell adhesion Chain: A: possible adhesin; the structure of a possible adhesin c-terminal domain from2 caldicellulosiruptor kronotskyensis
c4xl1E_ protein binding Chain: E: delta-like protein; complex of notch1 (egf11-13) bound to delta-like 4 (n-egf1)
c4miyB_ oxidoreductase Chain: B: inositol 2-dehydrogenase/d-chiro-inositol 3-dehydrogenase; crystal structure of myo-inositol dehydrogenase from lactobacillus2 casei in complex with nad and myo-inositol
c4r24B_ transcrption/dna Chain: B: hth-type transcriptional regulator tnra; complete dissection of b. subtilis nitrogen homeostatic circuitry
c4xlwB_ protein binding Chain: B: delta-like protein; complex of notch1 (egf11-13) bound to delta-like 4 (n-egf2)
c4xh7A_ signaling protein Chain: A: multiple pdz domain protein; crystal structure of mupp1 pdz4
c3wprA_ cell adhesion Chain: A: trimeric autotransporter adhesin; acinetobacter sp. tol 5 ataa n-terminal half of c-terminal stalk fused2 to gcn4 adaptors (cstalkn)
c4q3oB_ hydrolase Chain: B: mgs-mt1; crystal structure of mgs-mt1, an alpha/beta hydrolase enzyme from a2 lake matapan deep-sea metagenome library
c4r8zB_ hydrolase Chain: B: cyclic di-gmp phosphodiesterase; crystal structure of pa4781 hd-gyp domain from pseudomonas aeruginosa2 at 2.2a resolution showing a bi-metallic ni ion center
c4rp9A_ membrane protein Chain: A: ascorbate-specific permease iic component ulaa; structure of a membrane protein
c4xt3A_ viral protein/signalling protein Chain: A: g-protein coupled receptor homolog us28; structure of a viral gpcr bound to human chemokine cx3cl1
c3wqaA_ cell adhesion Chain: A: trimeric autotransporter adhesin; acinetobacter sp. tol 5 ataa ydd-dall3 domains in c-terminal stalk2 fused to gcn4 adaptors (cstalkc1ii)
c4pdnA_ oxidoreductase Chain: A: uncharacterized protein; crystal structure of e. coli yfcm
c3wx6A_ unknown function Chain: A: uncharacterized protein; crystal structure of type six secretion system protein
c4r4eA_ transcription regulator/dna Chain: A: hth-type transcriptional regulator glnr; structure of glnr-dna complex
c4mkzA_ oxidoreductase Chain: A: inositol dehydrogenase; crystal structure of apo scyllo-inositol dehydrogenase from2 lactobacillus casei at 77k
c4pc4B_ lipid binding protein Chain: B: 30k lipoprotein; bombyx mori lipoprotein 6
c2mnqA_ protein binding Chain: A: thymosin alpha-1; 1h, 13c, and 15n chemical shift assignments for thymosin alpha 1
c4p1tA_ membrane protein Chain: A: erythrocyte membrane protein 1; crystal structure of the dbl3x-dbl4epsilon double domain from the2 extracellular part of var2csa pfemp1 from plasmodium falciparum
c4x9mA_ oxidoreductase Chain: A: l-alpha-glycerophosphate oxidase; oxidized l-alpha-glycerophosphate oxidase from mycoplasma pneumoniae2 with fad bound
c4ow2D_ toxin Chain: D: yop effector yopm; yopm from yersinia enterocolitica wa-314
c4ozwA_ lyase Chain: A: alginate lyase; crystal structure of the periplasmic alginate lyase algl h202a mutant
c4wlpB_ protein binding Chain: B: nuclear factor related to kappa-b-binding protein; crystal structure of uch37-nfrkb inhibited deubiquitylating complex
c4d6wC_ viral protein Chain: C: glycoprotein g; crystal structure of the low ph conformation of chandipura2 virus glycoprotein g ectodomain
c4xinB_ unknown function Chain: B: lpqh orthologue; x-ray crystal structure of an lpqh orthologue from mycobacterium avium
c4rz3B_ structural protein Chain: B: site-determining protein; crystal structure of the mind-like atpase flhg
c4rp8A_ membrane protein Chain: A: ascorbate-specific permease iic component ulaa; structure of a membrane protein
c4ozxA_ lyase Chain: A: alginate lyase; crystal structure of the alginate lyase from klebsiella pneumoniae
c2mwrA_ antimicrobial protein Chain: A: acidocin b; solution structure of acidocin b, a circular bacteriocin from2 lactobacillus acidophilus m46
c4xaiP_ transcription Chain: P: grunge, isoform j; crystal structure of red flour beetle nr2e1/tlx
c4r25A_ transcription Chain: A: nitrogen regulatory pii-like protein; structure of b. subtilis glnk
c4p29A_ protein binding Chain: A: lpoa; crystal structure of the lpoa n-terminal domain from haemophilus2 influenzae
c2ml7A_ unknown function Chain: A: specific abundant protein 3; ginsentides: characterization, structure and application of a new2 class of highly stable cystine knot peptides in ginseng
c3wp8A_ cell adhesion Chain: A: trimeric autotransporter adhesin; acinetobacter sp. tol 5 ataa c-terminal ylhead fused to gcn4 adaptors2 (chead)
c3wpaA_ cell adhesion Chain: A: trimeric autotransporter adhesin; acinetobacter sp. tol 5 ataa c-terminal stalk_fl fused to gcn42 adaptors (cstalkfl)


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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