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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Jan 31

Fold library idPDB HeaderMoleculeTitle
c4rieB_ transferase Chain: B: glycosyl transferase homolog; landomycin glycosyltransferase langt2
c4rw0B_ hydrolase Chain: B: lipolytic protein g-d-s-l family; crystal structure of a member of the lipolytic protein g-d-s-l family2 from veillonella parvula dsm 2008
c3j96F_ hydrolase Chain: F: vesicle-fusing atpase; structure of 20s supercomplex determined by single particle2 cryoelectron microscopy (state i)
c4s1vD_ oxidoreductase Chain: D: d-3-phosphoglycerate dehydrogenase-related protein; crystal structure of phosphoglycerate oxidoreductase from vibrio2 cholerae o395
c4rv7C_ transferase Chain: C: diadenylate cyclase; characterization of an essential diadenylate cyclase
c4qfkG_ peptide binding protein Chain: G: abc transporter periplasmic peptide-binding protein; crystal structure of dipeptide binding protein from pseudoalteromonas2 sp. sm9913
c4s1hA_ transferase Chain: A: pyridoxal kinase; pyridoxal kinase of entamoeba histolytica with adp
c4xa9D_ structural genomics, unknown function Chain: D: gala protein type 1, 3 or 4; crystal structure of the complex between the n-terminal domain of ravj2 and legl1 from legionella pneumophila str. philadelphia
c4v0qA_ transferase Chain: A: ns5 polymerase; dengue virus full length ns5 complexed with sah
c4s17E_ ligase Chain: E: glutamine synthetase; the crystal structure of glutamine synthetase from bifidobacterium2 adolescentis atcc 15703
c4utbI_ immune system/viral protein Chain: I: broadly neutralizing human antibody ede2 a11; crystal structure of dengue 2 virus envelope glycoprotein2 in complex with the fab fragment of the broadly3 neutralizing human antibody ede2 a11
c3j98J_ hydrolase Chain: J: alpha-soluble nsf attachment protein; structure of 20s supercomplex determined by single particle2 cryoelectron microscopy (state iiia)
c4xfrB_ structural genomics, unknown function Chain: B: uncharacterized protein; crystal structure of a domain of unknown function (duf1537) from2 bordetella bronchiseptica (bb3215), target efi-511620, with bound3 citrate, domain swapped dimer, space group p6522
c4ohqB_ isomerase Chain: B: triosephosphate isomerase, chloroplastic; crystal structure of chloroplast triose phosphate isomerase from2 arabidopsis thaliana
c4m8sB_ oxidoreductase Chain: B: putative 3-oxoacyl-[acyl-carrier protein] reductase; crystal structure of 3-ketoacyl -(acyl carrier protein) reductase2 (fabg) from neisseria meningitidis
c4opbA_ metal binding protein Chain: A: predicted protein; aa13 lytic polysaccharide monooxygenase from aspergillus oryzae
c4s1aB_ unknown function Chain: B: uncharacterized protein; crystal structure of a hypothetical protein cthe_0052 from2 ruminiclostridium thermocellum atcc 27405
c4u9wA_ transferase Chain: A: n-alpha-acetyltransferase 40; crystal structure of natd bound to h4/h2a peptide and coa
c2mxvA_ rna binding protein Chain: A: rna-binding protein 10; nmr structure of the first zinc finger domain of rbm10
c4x8bA_ oxidoreductase Chain: A: sulfoxide synthase egtb; ergothioneine-biosynthetic sulfoxide synthase egtb, apo form
c4rymA_ membrane protein Chain: A: integral membrane protein; crystal structure of bctspo iodo type1 monomer
c4xa9g_ structural genomics, unknown function Chain: G: gala protein type 1, 3 or 4; crystal structure of the complex between the n-terminal domain of ravj2 and legl1 from legionella pneumophila str. philadelphia
c2mw3A_ unknown function Chain: A: lasso peptide; solution nmr structure of the lasso peptide streptomonomicin
c4ua3A_ transferase Chain: A: uncharacterized n-acetyltransferase c825.04c; crystal structure of selenomethionine labeled spnatd
c4oudA_ ligase Chain: A: tyrosyl-trna synthetase; engineered tyrosyl-trna synthetase with the nonstandard amino acid l-2 4,4-biphenylalanine
c3j99M_ hydrolase Chain: M: synaptosomal-associated protein 25; structure of 20s supercomplex determined by single particle2 cryoelectron microscopy (state iiib)
c4wv4B_ transcription Chain: B: transcription initiation factor tfiid subunit 8; heterodimer of taf8/taf10
c4rpiA_ transferase Chain: A: nicotinate-nucleotide adenylyltransferase; crystal structure of nicotinate mononucleotide adenylyltransferase2 from mycobacterium tuberculosis
c4x2zA_ hydrolase Chain: A: nonstructural protein 3; structural view and substrate specificity of papain-like protease from2 avian infectious bronchitis virus
c4wznB_ viral protein Chain: B: genome polyprotein; crystal structure of the 2b protein soluble domain from hepatitis a2 virus
c4xeqC_ transport protein Chain: C: trap dicarboxylate transporter, dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 desulfovibrio vulgaris (deval_0042, target efi-510114) bound to3 copurified (r)-pantoic acid
c2muyA_ nucleotide binding protein Chain: A: atp-dependent zinc metalloprotease ftsh; the solution structure of the ftsh periplasmic n-domain
c4s1nA_ transferase Chain: A: phosphoribosylglycinamide formyltransferase; the crystal structure of phosphoribosylglycinamide formyltransferase2 from streptococcus pneumoniae tigr4
c2mr7A_ biosynthetic protein Chain: A: non-ribosomal peptide synthetase; apo structure of the peptidyl carrier protein domain 7 of the2 teicoplanin producing non-ribosomal peptide synthetase
c4r4zD_ hydrolase Chain: D: pngf-ii; structure of pngf-ii in p21 space group
c3wqgB_ lyase Chain: B: d-threo-3-hydroxyaspartate dehydratase; d-threo-3-hydroxyaspartate dehydratase c353a mutant in the metal-free2 form
c4om8B_ oxidoreductase Chain: B: 3-hydroxybutyryl-coa dehydrogenase; crystal structure of 5-formly-3-hydroxy-2-methylpyridine 4-carboxylic2 acid (fhmpc) 5-dehydrogenase, an nad+ dependent dismutase.
c4rvgA_ transferase Chain: A: d-mycarose 3-c-methyltransferase; crystal structure of mtmc in complex with sam and tdp
c4oudB_ ligase Chain: B: tyrosyl-trna synthetase; engineered tyrosyl-trna synthetase with the nonstandard amino acid l-2 4,4-biphenylalanine
c4ojaA_ oxidoreductase Chain: A: superoxide dismutase [cu-zn]; structure of hydra cu-zn superoxide dismutase
c4xltA_ signaling protein Chain: A: response regulator receiver protein; crystal structure of response regulator receiver protein from2 dyadobacter fermentans dsm 18053
c4woyB_ transferase Chain: B: mitochondrial dynamics protein mid49; crystal structure and functional analysis of mid49, a receptor for the2 mitochondrial fission protein drp1
c4wd1A_ ligase Chain: A: acetoacetate-coa ligase; acetoacetyl-coa synthetase from streptomyces lividans
c2m8hA_ rna binding protein Chain: A: rna-binding protein 7; rrm domain of human rbm7
c4xfeA_ transport protein Chain: A: trap dicarboxylate transporter subunit dctp; crystal structure of a trap periplasmic solute binding protein from2 pseudomonas putida f1 (pput_1203), target efi-500184, with bound d-3 glucuronate
c4rtbA_ lyase Chain: A: hydg protein; x-ray structure of the fefe-hydrogenase maturase hydg from2 carboxydothermus hydrogenoformans
c4ol4A_ lipid binding protein Chain: A: proline-rich 28 kda antigen; crystal structure of secreted proline rich antigen mtc28 (rv0040c)2 from mycobacterium tuberculosis
c4cl2A_ transport protein Chain: A: periplasmic solute binding protein; structure of periplasmic metal binding protein from2 candidatus liberibacter asiaticus
c4s1pA_ hydrolase Chain: A: uncharacterized protein; shel_16390 protein, a putative sgnh hydrolase from slackia2 heliotrinireducens
c4o9uB_ membrane protein Chain: B: nad(p) transhydrogenase subunit beta; mechanism of transhydrogenase coupling proton translocation and2 hydride transfer
c2mmmA_ antibiotic Chain: A: k cecropin-like peptide; solution structure of the mature form, gk cecropin-like peptide from2 ae. aegypti mosquito
c4ci6B_ transferase/structural protein Chain: B: protein kinase yopo; mechanisms of crippling actin-dependent phagocytosis by yopo
c4d7yA_ signaling protein Chain: A: c1q-related factor; crystal structure of mouse c1ql1 globular domain
c4rl1A_ transferase Chain: A: type i polyketide synthase aves 1; structural and functional analysis of a loading acyltransferase from2 the avermectin modular polyketide synthase
c4xp7A_ oxidoreductase Chain: A: trna-dihydrouridine(20) synthase [nad(p)+]-like; crystal structure of human trna dihydrouridine synthase 2
c2mv3A_ nucleotide binding protein Chain: A: mitochondrial inner membrane i-aaa protease supercomplex the n-domain of the aaa metalloproteinase yme1 from saccharomyces2 cerevisiae
c4wv4A_ transcription Chain: A: transcription initiation factor tfiid subunit 10; heterodimer of taf8/taf10


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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