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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Dec 27

Fold library idPDB HeaderMoleculeTitle
c4o00A_ structural protein Chain: A: titin; crystal structure of the titin a-band domain a3
c4rxmA_ transport protein Chain: A: possible sugar abc superfamily atp binding cassette crystal structure of periplasmic abc transporter solute binding2 protein a7jw62 from mannheimia haemolytica phl213, target efi-511105,3 in complex with myo-inositol
c4nnkA_ ribosomal protein Chain: A: 30s ribosomal protein s1; structural basis for targeting the ribosomal protein s1 of2 mycobacterium tuberculosis by pyrazinamide
c4rdmB_ hydrolase/dna Chain: B: restriction endonuclease r.ngovii; crystal structure of r.ngoavii restriction endonuclease b3 domain with2 cognate dna
c4rgpA_ unknown function Chain: A: csm6_iii-a; crystal structure of uncharacterized crispr/cas system-associated2 protein csm6 from streptococcus mutans
c2mtfA_ rna binding protein Chain: A: la-related protein 6; solution structure of the la motif of human larp6
c4qtsC_ rna binding protein Chain: C: crispr type iii-associated ramp protein csm3; crystal structure of csm3-csm4 subcomplex in the type iii-a crispr-cas2 interference complex
c4qttB_ transferase Chain: B: putative methyltransferase bud23; crystal structure of rrna modifying enzyme
c4wj7A_ protein binding Chain: A: malcavernin; ccm2 ptb domain in complex with krit1 npxy/f3
c4ruwA_ hydrolase Chain: A: endonuclease/exonuclease/phosphatase; the crystal structure of endonuclease/exonuclease/phosphatase from2 beutenbergia cavernae dsm 12333
c4rg9S_ protein binding Chain: S: anaphase-promoting complex subunit 16; crystal structure of apc3-apc16 complex (selenomethionine derivative)
c4wfiA_ hydrolase Chain: A: cutinase; crystal strucrure of pet-degrading cutinase cut190 s226p mutant in2 ca(2+)-free state
c4rg6B_ protein binding Chain: B: cell division cycle protein 27 homolog; crystal structure of apc3-apc16 complex
c3wxiB_ transferase Chain: B: glycerol kinase; crystal structure of trypanosoma brucei gambiense glycerol kinase2 (ligand-free form)
c4uegB_ transferase Chain: B: glycogenin-2; crystal structure of human glycogenin-2 catalytic domain
c4qtsB_ rna binding protein Chain: B: crispr type iii-associated ramp protein csm4; crystal structure of csm3-csm4 subcomplex in the type iii-a crispr-cas2 interference complex
c2m8uA_ contractile protein Chain: A: myosin light chain, mlcc; solution structure of the dictyostelium discodieum myosin light chain,2 mlcc
c3wo8B_ hydrolase Chain: B: beta-n-acetylglucosaminidase; crystal structure of the beta-n-acetylglucosaminidase from thermotoga2 maritima
c4wslA_ de novo protein Chain: A: pentatricopeptide repeat protein; crystal structure of designed cppr-polyc protein
c4rnbA_ signaling protein Chain: A: orexin receptor type 2, glga glycogen synthase; crystal structure of the human ox2 orexin receptor bound to the2 insomnia drug suvorexant
c2muzD_ de novo protein Chain: D: designed rocker protein; ssnmr structure of a designed rocker protein
c4rotA_ hydrolase Chain: A: esterase a; crystal structure of esterase a from streptococcus pyogenes
c4xauG_ transferase Chain: G: putative aminotransferase; crystal structure of ats13 from actinomadura melliaura
c4rfsS_ hydrolase, transport protein Chain: S: substrate binding pritein s; structure of a pantothenate energy coupling factor transporter
c4nlhA_ protein binding Chain: A: tax1-binding protein 1; skich domain of human tax1bp1
c4ociA_ signaling protein Chain: A: calmodulin, putative; crystal structure of calcium binding protein-5 from entamoeba2 histolytica and its involvement in initiation of phagocytosis of3 human erythrocytes
c4x8rB_ solute-binding protein Chain: B: trap dicarboxylate transporter, dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 rhodobacter sphaeroides (rsph17029_2138, target efi-510205) with3 bound glucuronate
c4wpeA_ protein binding Chain: A: cytokinesis protein 2; crystal structure of hof1p f-bar domain
c2muzC_ de novo protein Chain: C: designed rocker protein; ssnmr structure of a designed rocker protein
c4wwrE_ transport protein Chain: E: large proline-rich protein bag6; crystal structure of bag6-ubl4a dimerization domain
c4p6lA_ de novo protein Chain: A: computationally designed transporter of zn(ii) and proton; crystal structure of the computationally designed transmembrane2 metallotransporter in octyl glucoside
c4r8tA_ hydrolase Chain: A: serine protease subunit ns2b; structure of jev protease
c2mhjA_ protein transport Chain: A: tpsb4 protein; solution structure of tpsb4 n-terminal potra domain from pseudomonas2 aeruginosa
c4d77A_ signaling protein Chain: A: gliomedin; high-resolution structure of the extracellular olfactomedin2 domain from gliomedin
c2mtgA_ rna binding protein Chain: A: la-related protein 6; solution structure of the rrm1 of human larp6
c4ry0A_ transport protein Chain: A: probable ribose abc transporter, substrate-binding protein; crystal structure of ribose transporter solute binding protein2 rhe_pf00037 from rhizobium etli cfn 42, target efi-511357, in complex3 with d-ribose
c4ry8D_ transport protein Chain: D: periplasmic binding protein; crystal structure of 5-methylthioribose transporter solute binding2 protein tlet_1677 from thermotoga lettingae tmo target efi-511109 in3 complex with 5-methylthioribose
c2mumA_ transcription regulator Chain: A: chromatin modification-related protein yng2; solution structure of the phd domain of yeast yng2
c4ry1A_ transport protein Chain: A: periplasmic solute binding protein; crystal structure of periplasmic solute binding protein eca2210 from2 pectobacterium atrosepticum scri1043, target efi-510858
c4wwrB_ transport protein Chain: B: ubiquitin-like protein 4a; crystal structure of bag6-ubl4a dimerization domain
c4rfsT_ hydrolase, transport protein Chain: T: energy-coupling factor transporter transmembrane protein structure of a pantothenate energy coupling factor transporter
c4cijA_ isomerase Chain: A: gst rep; structure of rolling circle replication initiator protein2 from geobacillus stearothermophilus.
c4udsA_ transcription Chain: A: mbdr regulator; crystal structure of mbdr regulator from azoarcus sp. cib
c2mj0A_ toxin Chain: A: weak tryptophan-containing neurotoxin; spatial structure of p33a mutant of non-conventional toxin wtx from2 naja kaouthia
c2mpiA_ protein binding Chain: A: insulin chain a; solution structure of b24g insulin
c4or1B_ cell adhesion Chain: B: invasin homolog aafb, major fimbrial subunit of aggregative structure and mechanism of fibronectin binding and biofilm formation2 of enteroaggregative escherischia coli aaf fimbriae
c4wpcB_ lipid binding protein Chain: B: rho gtpase-activating protein rgd1; crystal structure of rgd1p f-bar domain in complex with inositol2 phosphate
c4ryaA_ transport protein Chain: A: abc transporter substrate binding protein (sorbitol); crystal structure of abc transporter solute binding protein avi_35672 from agrobacterium vitis s4, target efi-510645, with bound d-mannitol
c3wyaA_ translation Chain: A: elongation factor 1-alpha; crystal structure of gdp-bound ef1alpha from pyrococcus horikoshii
c4ry9A_ transport protein Chain: A: periplasmic binding protein/laci transcriptional regulator; crystal structure of carbohydrate transporter solute binding protein2 veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009,3 a complex with d-talitol
c4rm7A_ oxidoreductase Chain: A: acyl-coa dehydrogenase; the crystal structure of acyl-coa dehydrogenase from slackia2 heliotrinireducens dsm 20476
c4wwrD_ transport protein Chain: D: ubiquitin-like protein 4a; crystal structure of bag6-ubl4a dimerization domain
c4rctB_ hydrolase Chain: B: restriction endonuclease r.ngovii; crystal structure of r-protein of ngoavii restriction endonuclease
c4x9tA_ unknown function Chain: A: uncharacterized protein upf0065; crystal structure of a tctc solute binding protein from polaromonas2 (bpro_3516, target efi-510338), no ligand
c4x2rA_ isomerase Chain: A: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) crystal structure of pria from actinomyces urogenitalis
c4nprA_ hydrolase Chain: A: xyloglucan-specific endo-beta-1,4-glucanase gh12; crystal structure of the family 12 xyloglucanase from aspergillus2 niveus
c4wo7A_ isomerase Chain: A: foldase protein prsa; crystal structure of prsa from bacillus subtilis
c4rxuA_ transport protein Chain: A: periplasmic sugar-binding protein; crystal structure of carbohydrate transporter solute binding protein2 caur_1924 from chloroflexus aurantiacus, target efi-511158, in3 complex with d-glucose
c4rxlA_ transport protein Chain: A: molybdenum abc transporter, periplasmic molybdenum-binding crystal structure of molybdenum abc transporter solute binding protein2 vc_a0726 from vibrio cholerae, target efi-510913, in complex with3 tungstate
c4u5aD_ transport protein Chain: D: sporozoite microneme protein essential for cell traversal; sporozoite protein for cell traversal
c4o2xA_ transport protein Chain: A: maltose-binding periplasmic protein, atp-dependent clp structure of a malarial protein
c3wy9D_ translation/ribosomal protein Chain: D: 50s ribosomal protein l12; crystal structure of a complex of the archaeal ribosomal stalk protein2 ap1 and the gdp-bound archaeal elongation factor aef1alpha
c4tx1C_ hydrolase Chain: C: esterase; the crystal structure of carbohydrate acetylesterase family member2 from sinorhizobium meliloti
c4p6lB_ de novo protein Chain: B: computationally designed transporter of zn(ii) and proton; crystal structure of the computationally designed transmembrane2 metallotransporter in octyl glucoside
c2micB_ membrane protein Chain: B: tumor necrosis factor receptor superfamily member 16; nmr structure of p75 transmembrane domain in dpc micelles
c4rg6S_ protein binding Chain: S: anaphase-promoting complex subunit 16; crystal structure of apc3-apc16 complex
c4wz1B_ ligase Chain: B: e3 ubiquitin-protein ligase lubx; crystal structure of u-box 2 of lubx / legu2 / lpp2887 from legionella2 pneumophila str. paris, wild-type
c4p6kA_ de novo protein Chain: A: computationally designed transporter of zn(ii) and proton; crystal structure of the computationally designed transmembrane2 metallotransporter with 4-bromophenylalanine in lipidic cubic phase
c2micA_ membrane protein Chain: A: tumor necrosis factor receptor superfamily member 16; nmr structure of p75 transmembrane domain in dpc micelles
c4rxtA_ transport protein Chain: A: sugar abc transporter; crystal structure of carbohydrate transporter solute binding protein2 arad_9553 from agrobacterium radiobacter, target efi-511541, in3 complex with d-arabinose
c2muzB_ de novo protein Chain: B: designed rocker protein; ssnmr structure of a designed rocker protein
c4p6jB_ de novo protein Chain: B: computationally designed transporter of zn(ii) and proton; crystal structure of the computationally designed transmembrane2 metallotransporter with 4-bromophenylalanine in octyl glucoside
c4p6jA_ de novo protein Chain: A: computationally designed transporter of zn(ii) and proton; crystal structure of the computationally designed transmembrane2 metallotransporter with 4-bromophenylalanine in octyl glucoside
c2muzA_ de novo protein Chain: A: designed rocker protein; ssnmr structure of a designed rocker protein
c3wy9C_ translation/ribosomal protein Chain: C: 50s ribosomal protein l12; crystal structure of a complex of the archaeal ribosomal stalk protein2 ap1 and the gdp-bound archaeal elongation factor aef1alpha


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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