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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Nov 22

Fold library idPDB HeaderMoleculeTitle
c3wvqA_ biosynthetic protein Chain: A: pgm1; structure of atp grasp protein
c4wrtC_ transferase/rna Chain: C: pb2; crystal structure of influenza b polymerase with bound vrna promoter2 (form flub2)
c4wsaB_ transferase/rna Chain: B: rna-directed rna polymerase catalytic subunit; crystal structure of influenza b polymerase bound to the vrna promoter2 (flub1 form)
c4v0lB_ hydrolase Chain: B: arf-like small gtpase; crystal structure of the crarl6dn in the gtp bound form
c4nhyC_ oxidoreductase/oxidoreductase inhibitor Chain: C: 2-oxoglutarate and iron-dependent oxygenase domain- crystal structure of human ogfod1, 2-oxoglutarate and iron-dependent2 oxygenase domain containing 1, in complex with pyridine-2,4-3 dicarboxylic acid (2,4-pdca)
c4clcD_ protein transport Chain: D: upf0303 protein ybr137w; crystal structure of ybr137w protein
c4v0nH_ hydrolase/structural protein Chain: H: bardet-biedl syndrome 1 protein; crystal structure of bbs1n in complex with arl6dn, soaked with2 mercury
c4r81C_ oxidoreductase Chain: C: nadh dehydrogenase; nad(p)h:quinone oxidoreductase from methanothermobacter marburgensis
c4tzoC_ peptide binding protein Chain: C: protein htp-1; structure of c. elegans htp-1 bound to him-3 closure motif
c4trkA_ dna binding protein Chain: A: c. elegans him-3; structure of c. elegans him-3
c4qvjA_ viral protein Chain: A: vp1; unliganded crystal structure of feline norovirus p domain co-2 crystallized with n-acetylneuraminic acid
c4qccA_ structural protein, lyase Chain: A: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, peptidyl- structure of a cube-shaped, highly porous protein cage designed by2 fusing symmetric oligomeric domains
c4rshB_ structural genomics, unknown function Chain: B: lipolytic protein g-d-s-l family; structure of a putative lipolytic protein of g-d-s-l family from2 desulfitobacterium hafniense dcb-2
c3wbkB_ biosynthetic protein Chain: B: eukaryotic translation initiation factor 5b; crystal structure analysis of eukaryotic translation initiation factor2 5b and 1a complex
c4wsbC_ transferase/rna Chain: C: polymerase pb2; bat influenza a polymerase with bound vrna promoter
c3wmjB_ viral protein Chain: B: eiav vaccine gp45; crystal structure of eiav vaccine gp45
c4rcmB_ rna binding protein/rna Chain: B: methylated rna-binding protein 1; crystal structure of the pho92 yth domain in complex with m6a
c3j81k_ ribosome Chain: K: es10; cryoem structure of a partial yeast 48s preinitiation complex
c4rnjA_ hydrolase Chain: A: motility regulator; pamora phosphodiesterase domain, apo form
c4wrtA_ transferase/rna Chain: A: pa; crystal structure of influenza b polymerase with bound vrna promoter2 (form flub2)
c4pedA_ transferase Chain: A: chaperone activity of bc1 complex-like, mitochondrial; mitochondrial adck3 employs an atypical protein kinase-like fold to2 enable coenzyme q biosynthes
c4qh0D_ hydrolase Chain: D: dna-entry nuclease (competence-specific nuclease); crystal structure of nuca from streptococcus agalactiae with magnesium2 ion bound
c4q2dA_ hydrolase Chain: A: crispr-associated helicase cas3; crystal structure of crispr-associated protein in complex with 2'-2 deoxyadenosine 5'-triphosphate
c4rngE_ sugar binding protein Chain: E: mtn3/saliva family; crystal structure of a bacterial homologue of sweet transporters
c4rcaB_ signaling protein Chain: B: slit and ntrk-like protein 1; crystal structure of human ptpdelta and human slitrk1 complex
c4rcwB_ signaling protein Chain: B: slit and ntrk-like protein 1; crystal structure of human slitrk1
c3wmiA_ viral protein Chain: A: eiav gp45 wild type; crystal structure of eiav wild type gp45
c2mjdA_ metal binding protein Chain: A: adrenodoxin homolog, mitochondrial; oxidized yeast adrenodoxin homolog 1
c4wjuB_ biosynthetic protein Chain: B: ribosome assembly protein 4; crystal structure of rsa4 from saccharomyces cerevisiae
c4qbaB_ transcription regulator Chain: B: lysr family regulatory protein; crystal structure of the effector-binding domain of s. aureus ccpe
c4rnhA_ transferase, hydrolase Chain: A: motility regulator; pamora tandem diguanylate cyclase - phosphodiesterase, c-di-gmp2 complex
c4u5yA_ ligase Chain: A: acyl-coa synthetase; crystal structure of the complex between the gnat domain of s.2 lividans pat and the acetyl-coa synthetase c-terminal domain of s.3 enterica
c4r3fA_ isomerase Chain: A: spliceosomal protein cwc27; structure of a spliceosomal protein from chaetomium thermophilum
c4noaA_ unknown function Chain: A: type 4 fimbrial biogenesis protein pile; truncated minor pilin pile from pseudomonas aeruginosa
c2mfjA_ allergen Chain: A: blo t 19; solution structure of blo t 19, a minor dust mite allergen from blomia2 tropicalis
c3wz1A_ hydrolase Chain: A: agarase; catalytic domain of beta-agarase from microbulbifer thermotolerans2 jamb-a94
c4nzsA_ transferase Chain: A: beta-ketothiolase bktb; crystal structure of beta-ketothiolase bktb b from ralstonia eutropha2 h16
c4rs2B_ transferase Chain: B: predicted acyltransferase with acyl-coa n-acyltransferase 1.55 angstrom crystal structure of gnat family n-acetyltransferase2 (yhbs) from escherichia coli in complex with coa
c4wsbA_ transferase/rna Chain: A: polymerase pa; bat influenza a polymerase with bound vrna promoter
c4rqoB_ lyase Chain: B: l-serine dehydratase; crystal structure of l-serine dehydratase from legionella pneumophila
c4wsaC_ transferase/rna Chain: C: pb2; crystal structure of influenza b polymerase bound to the vrna promoter2 (flub1 form)
c4wjsA_ biosynthetic protein Chain: A: rsa4; crystal structure of rsa4 from chaetomium thermophilum
c2mfkA_ allergen Chain: A: blo 1 12; nmr solution structure of chitin-binding domain from dust mite group2 xii allergen blo t 12
c4wgiA_ apoptosis/inhibitor Chain: A: maltose-binding periplasmic protein,induced myeloid a single diastereomer of a macrolactam core binds specifically to2 myeloid cell leukemia 1 (mcl1)
c4ro6A_ lyase Chain: A: lactoylglutathione lyase; crystal structure of glyoxalase i from zea mays
c4rs3A_ transport protein Chain: A: abc transporter, carbohydrate uptake transporter-2 (cut2) crystal structure of carbohydrate transporter a0qyb3 from2 mycobacterium smegmatis str. mc2 155, target efi-510969, in complex3 with xylitol
c3wwnB_ metal binding protein/transferase Chain: B: orff; crystal structure of lysz from thermus thermophilus complex with lysw
c4wsbB_ transferase/rna Chain: B: rna-directed rna polymerase catalytic subunit; bat influenza a polymerase with bound vrna promoter


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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