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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Oct 25

Fold library idPDB HeaderMoleculeTitle
c4ukpi_ ribosome Chain: I: 40s ribosomal protein s7-a; crystal structure of deoxynivalenol bound to the yeast 80s ribosome
c3j8cH_ translation Chain: H: eukaryotic translation initiation factor 3 subunit h; model of the human eif3 pci-mpn octamer docked into the 43s em map
c4ukyO_ ribosome Chain: O: 60s ribosomal protein l24-a; crystal structure of edeine bound to the yeast 80s ribosome
c4uk3O_ ribosome Chain: O: 60s ribosomal protein l24-a; crystal structure of anisomycin bound to the yeast 80s ribosome
c4ultN_ ribosome Chain: N: 60s ribosomal protein l24-a; crystal structure of verrucarin bound to the yeast 80s ribosome
c4ulra_ ribosome Chain: A: 60s ribosomal protein l15-a; crystal structure of verrucarin bound to the yeast 80s ribosome
c4pn8I_ de novo protein Chain: I: cc-pent; a de novo designed pentameric coiled coil cc-pent.
c4oqzA_ oxidoreductase Chain: A: putative oxidoreductase yfjr; streptomyces aurantiacus imine reductase
c4p65E_ hormone Chain: E: insulin; crystal structure of an cyclohexylalanine substituted insulin analog.
c4ritB_ lyase Chain: B: pyridoxal-dependent decarboxylase; the yellow crystal structure of pyridoxal-dependent decarboxylase from2 sphaerobacter thermophilus dsm 20745
c4pndB_ de novo protein Chain: B: cc-pent_variant; a de novo designed pentameric coiled coil cc-pent_variant
c4rdqA_ transport protein Chain: A: bestrophin-1; calcium-activated chloride channel bestrophin-1, from chicken, in2 complex with fab antibody fragments, chloride and calcium
c4pp0B_ transport protein Chain: B: nopaline-binding periplasmic protein; structure of a m117n periplasmic binding protein mutant in complex2 with a ligand
c4rjjB_ lyase Chain: B: acetolactate synthase; acetolactate synthase from bacillus subtilis bound to thdp - crystal2 form ii
c4uqzA_ protein transport Chain: A: hsie1; coevolution of the atpase clpv, the tssb-tssc sheath and2 the accessory hsie protein distinguishes two type vi3 secretion classes
c4pn8G_ de novo protein Chain: G: cc-pent; a de novo designed pentameric coiled coil cc-pent.
c3wwoA_ lyase Chain: A: (s)-hydroxynitrile lyase; s-selective hydroxynitrile lyase from baliospermum montanum (apo1)
c4ox0D_ transcription Chain: D: developmental protein sepallata 3; crystal structure of the keratin-like domain from the mads2 transcription factor sepallata 3
c4uk3f_ ribosome Chain: F: 60s ribosomal protein l15-a; crystal structure of anisomycin bound to the yeast 80s ribosome
c4pj0T_ oxidoreductase, electron transport Chain: T: photosystem ii reaction center protein t; structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
c4uk2H_ ribosome Chain: H: suppressor protein stm1; crystal structure of anisomycin bound to the yeast 80s ribosome
c4r8kC_ hydrolase Chain: C: uncharacterized protein; crystal structure of the guinea pig l-asparaginase 1 catalytic domain
c4wjiA_ oxidoreductase Chain: A: putative cyclohexadienyl dehydrogenase and adh prephenate crystal structure of cyclohexadienyl dehydrogenase from sinorhizobium2 meliloti in complex with nadp and tyrosine
c4wgwA_ transport protein Chain: A: divalent metal cation transporter mnth; staphylococcus capitis divalent metal ion transporter (dmt) in complex2 with manganese
c4nxiB_ oxidoreductase Chain: B: uncharacterized protein; rv2466c mediates the activation of tp053 to kill replicating and non-2 replicating mycobacterium tuberculosis
c4uk8O_ ribosome Chain: O: 60s ribosomal protein l24-a; crystal structure of cca trinucleotide bound to the yeast 80s ribosome
c4u6uB_ transport protein Chain: B: cog5; crystal structure of the cog5-cog7 complex from kluyveromyces lactis
c3j8cE_ translation Chain: E: eukaryotic translation initiation factor 3 subunit e; model of the human eif3 pci-mpn octamer docked into the 43s em map
c4uldO_ ribosome Chain: O: 60s ribosomal protein l24-a; crystal structure of nagilactone c bound to the yeast 80s ribosome
c4ulof_ ribosome Chain: F: 60s ribosomal protein l15-a; crystal structure of phyllanthoside bound to the yeast 80s ribosome
c4uy3A_ structural protein Chain: A: septation ring formation regulator ezra; cytoplasmic domain of bacterial cell division protein ezra
c4r6iA_ transcription Chain: A: anthrax toxin expression trans-acting positive regulator; atxa protein, a virulence regulator from bacillus anthracis.
c4pn9C_ de novo protein Chain: C: cc-hex2; a de novo designed hexameric coiled coil cc-hex2
c4pl7B_ structural protein, contractile protein Chain: B: actin,thymosin beta-4; structure of komagataella pastoris actin-thymosin beta4 hybrid
c4pnaF_ de novo protein Chain: F: cc-hept; a de novo designed heptameric coiled coil cc-hept
c4mypA_ heme-binding protein Chain: A: iron-regulated surface determinant protein a; structure of the central neat domain, n2, of the listerial hbp22 protein complexed with heme
c4pvcB_ oxidoreductase Chain: B: nadph-dependent methylglyoxal reductase gre2; crystal structure of yeast methylglyoxal/ isovaleraldehyde reductase2 gre2
c4ulba_ ribosome Chain: A: 60s ribosomal protein l15-a; crystal structure of nagilactone c bound to the yeast 80s ribosome
c4ul8f_ ribosome Chain: F: 60s ribosomal protein l15-a; crystal structure of homoharringtonine bound to the yeast 80s ribosome
c3j8bH_ translation Chain: H: eukaryotic translation initiation factor 3 subunit h; model of the human eif3 pci-mpn octamer docked into the 43s-hcv ires2 em map
c4p65I_ hormone Chain: I: insulin; crystal structure of an cyclohexylalanine substituted insulin analog.
c4pj0L_ oxidoreductase, electron transport Chain: L: photosystem ii reaction center protein l; structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
c4uqwA_ chaperone Chain: A: protein clpv1; coevolution of the atpase clpv, the tssb-tssc sheath and2 the accessory hsie protein distinguishes two type vi3 secretion classes
c4ul1a_ ribosome Chain: A: 60s ribosomal protein l15-a; crystal structure of geneticin bound to the yeast 80s ribosome
c4o7oB_ transferase Chain: B: maltokinase; crystal structure of mycobacterium tuberculosis maltose kinase mak
c4pn9B_ de novo protein Chain: B: cc-hex2; a de novo designed hexameric coiled coil cc-hex2
c3j8cL_ translation Chain: L: eukaryotic translation initiation factor 3 subunit l; model of the human eif3 pci-mpn octamer docked into the 43s em map
c3j8bA_ translation Chain: A: eukaryotic translation initiation factor 3 subunit a; model of the human eif3 pci-mpn octamer docked into the 43s-hcv ires2 em map
c4p4sB_ antiviral protein/hyrolase Chain: B: interferon-induced gtp-binding protein mx1; gmppcp-bound stalkless-mxa
c2ru0A_ antimicrobial protein Chain: A: arthropod defensin; solution structure of actinomycin
c4u9cA_ lactoferrin-binding protein Chain: A: lactoferrin-binding protein b; structure of the lbpb n-lobe from neisseria meningitidis
c4uktO_ ribosome Chain: O: 60s ribosomal protein l24-a; crystal structure of deoxynivalenol bound to the yeast 80s ribosome
c4pj0Y_ oxidoreductase, electron transport Chain: Y: photosystem ii reaction center protein ycf12; structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
c4ulma_ ribosome Chain: A: 60s ribosomal protein l15-a; crystal structure of phyllanthoside bound to the yeast 80s ribosome
c4uqzB_ protein transport Chain: B: hsib1; coevolution of the atpase clpv, the tssb-tssc sheath and2 the accessory hsie protein distinguishes two type vi3 secretion classes
c3j8cA_ translation Chain: A: eukaryotic translation initiation factor 3 subunit a; model of the human eif3 pci-mpn octamer docked into the 43s em map
c4ukma_ ribosome Chain: A: 60s ribosomal protein l15-a; crystal structure of cryptopleurine bound to the yeast 80s ribosome
c4pn8C_ de novo protein Chain: C: cc-pent; a de novo designed pentameric coiled coil cc-pent.
c4ukje_ ribosome Chain: E: 60s ribosomal protein l15-a; crystal structure of blasticidin s bound to the yeast 80s ribosome
c4pn8J_ de novo protein Chain: J: cc-pent; a de novo designed pentameric coiled coil cc-pent.
c4pnaB_ de novo protein Chain: B: cc-hept; a de novo designed heptameric coiled coil cc-hept
c4uk1a_ ribosome Chain: A: 60s ribosomal protein l15-a; crystal structure of anisomycin bound to the yeast 80s ribosome
c4ulte_ ribosome Chain: E: 60s ribosomal protein l15-a; crystal structure of verrucarin bound to the yeast 80s ribosome
c4pn8A_ de novo protein Chain: A: cc-pent; a de novo designed pentameric coiled coil cc-pent.
c4pn8F_ de novo protein Chain: F: cc-pent; a de novo designed pentameric coiled coil cc-pent.
c4u6uC_ transport protein Chain: C: cog7; crystal structure of the cog5-cog7 complex from kluyveromyces lactis
c4pn8H_ de novo protein Chain: H: cc-pent; a de novo designed pentameric coiled coil cc-pent.
c4pndC_ de novo protein Chain: C: cc-pent_variant; a de novo designed pentameric coiled coil cc-pent_variant
c4uloO_ ribosome Chain: O: 60s ribosomal protein l24-a; crystal structure of phyllanthoside bound to the yeast 80s ribosome
c2rtzA_ toxin Chain: A: potassium channel blocker marktx-7; solution structure of marktx-7
c4qxeA_ membrane protein Chain: A: leucine-rich repeat-containing g-protein coupled receptor crystal structure of lgr4 fused with hagfish vlr
c4ujha_ ribosome Chain: A: 60s ribosomal protein l15-a; crystal structure of narciclasine bound to the yeast 80s ribosome
c4qc6A_ transferase/antibiotic Chain: A: bifunctional aac/aph; crystal structure of aminoglycoside 6'-acetyltransferase-ie
c4wgvC_ transport protein Chain: C: divalent metal cation transporter mnth; crystal structure of staphylococcus capitis divalent metal ion2 transporter (dmt) in complex with nanobody
c4p65G_ hormone Chain: G: insulin; crystal structure of an cyclohexylalanine substituted insulin analog.
c4p65K_ hormone Chain: K: insulin; crystal structure of an cyclohexylalanine substituted insulin analog.
c4ujjO_ ribosome Chain: O: 60s ribosomal protein l24-a; crystal structure of narciclasine bound to the yeast 80s ribosome
c4pn9A_ de novo protein Chain: A: cc-hex2; a de novo designed hexameric coiled coil cc-hex2
c3j8bC_ translation Chain: C: eukaryotic translation initiation factor 3 subunit c; model of the human eif3 pci-mpn octamer docked into the 43s-hcv ires2 em map
c4u3qA_ lipid binding protein Chain: A: 17 kda lipoprotein; crystal structure of recombinant tp0435 from treponema pallidum
c4ukeO_ ribosome Chain: O: 60s ribosomal protein l24-a; crystal structure of cycloheximide bound to the yeast 80s ribosome
c4ujwa_ ribosome Chain: A: 60s ribosomal protein l15-a; crystal structure of t-2 toxin bound to the yeast 80s ribosome
c4q9vB_ immune system Chain: B: tumor necrosis factor alpha-induced protein 8-like protein crystal structure of tipe3
c4p65A_ hormone Chain: A: insulin; crystal structure of an cyclohexylalanine substituted insulin analog.
c3j8cC_ translation Chain: C: eukaryotic translation initiation factor 3 subunit c; model of the human eif3 pci-mpn octamer docked into the 43s em map
c4pl8H_ contractile protein/structural protein Chain: H: thymosin beta-4,protein cordon-bleu,thymosin beta-4; structure of rabbit skeletal muscle actin in complex with a hybrid2 peptide comprising thymosin beta4 and the lysine-rich region of3 cordon-bleu
c4pn8B_ de novo protein Chain: B: cc-pent; a de novo designed pentameric coiled coil cc-pent.
c4ul3f_ ribosome Chain: F: 60s ribosomal protein l15-a; crystal structure of geneticin bound to the yeast 80s ribosome
c4qakA_ hydrolase Chain: A: 2'-5'-rna ligase; crystal structure of phosphoesterase
c4ukoN_ ribosome Chain: N: 60s ribosomal protein l24-a; crystal structure of cryptopleurine bound to the yeast 80s ribosome
c4ukoe_ ribosome Chain: E: 60s ribosomal protein l15-a; crystal structure of cryptopleurine bound to the yeast 80s ribosome
c4pnaE_ de novo protein Chain: E: cc-hept; a de novo designed heptameric coiled coil cc-hept
c4ujoO_ ribosome Chain: O: 60s ribosomal protein l24-a; crystal structure of lycorine bound to the yeast 80s ribosome
c4ul3O_ ribosome Chain: O: 60s ribosomal protein l24-a; crystal structure of geneticin bound to the yeast 80s ribosome
c4pnaD_ de novo protein Chain: D: cc-hept; a de novo designed heptameric coiled coil cc-hept
c4ul6a_ ribosome Chain: A: 60s ribosomal protein l15-a; crystal structure of homoharringtonine bound to the yeast 80s ribosome
c4uldf_ ribosome Chain: F: 60s ribosomal protein l15-a; crystal structure of nagilactone c bound to the yeast 80s ribosome
c4ukwa_ ribosome Chain: A: 60s ribosomal protein l15-a; crystal structure of edeine bound to the yeast 80s ribosome
c4pj0R_ oxidoreductase, electron transport Chain: R: photosystem ii protein y; structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
c4r0rA_ biosynthetic protein Chain: A: eboizn21; ebolavirus gp prehairpin intermediate mimic
c3j8bF_ translation Chain: F: eukaryotic translation initiation factor 3 subunit f; model of the human eif3 pci-mpn octamer docked into the 43s-hcv ires2 em map
c4oqyA_ oxidoreductase Chain: A: (s)-imine reductase; streptomyces sp. gf3546 imine reductase
c4pnaA_ de novo protein Chain: A: cc-hept; a de novo designed heptameric coiled coil cc-hept
c4pj0r_ oxidoreductase, electron transport Chain: R: photosystem ii protein y; structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
c4pn8E_ de novo protein Chain: E: cc-pent; a de novo designed pentameric coiled coil cc-pent.
c4uk8f_ ribosome Chain: F: 60s ribosomal protein l15-a; crystal structure of cca trinucleotide bound to the yeast 80s ribosome
c4qnwA_ oxidoreductase Chain: A: chanoclavine-i aldehyde reductase; crystal structure of easa, an old yellow enzyme from aspergillus2 fumigatus
c4ul8O_ ribosome Chain: O: 60s ribosomal protein l24-a; crystal structure of homoharringtonine bound to the yeast 80s ribosome
c4pn9F_ de novo protein Chain: F: cc-hex2; a de novo designed hexameric coiled coil cc-hex2
c4ukef_ ribosome Chain: F: 60s ribosomal protein l15-a; crystal structure of cycloheximide bound to the yeast 80s ribosome
c4pnbD_ de novo protein Chain: D: cc-hex3; a de novo designed hexameric coiled coil cc-hex3
c4pnbB_ de novo protein Chain: B: cc-hex3; a de novo designed hexameric coiled coil cc-hex3
c3j7z2_ ribosome/antibiotic Chain: 2: 50s ribosomal protein l34; structure of the e. coli 50s subunit with ermcl nascent chain
c3j8cF_ translation Chain: F: eukaryotic translation initiation factor 3 subunit f; model of the human eif3 pci-mpn octamer docked into the 43s em map
c4ulif_ ribosome Chain: F: 60s ribosomal protein l15-a; crystal structure of pactamycin bound to the yeast 80s ribosome
c4ujtf_ ribosome Chain: F: 60s ribosomal protein l15-a; crystal structure of lactimidomycin bound to the yeast 80s ribosome
c4wiuA_ lyase Chain: A: phosphoenolpyruvate carboxykinase [gtp]; crystal structure of pepck (rv0211) from mycobacterium tuberculosis in2 complex with oxalate and mn2+
c4uliO_ ribosome Chain: O: 60s ribosomal protein l24-a; crystal structure of pactamycin bound to the yeast 80s ribosome
c4ujma_ ribosome Chain: A: 60s ribosomal protein l15-a; crystal structure of lycorine bound to the yeast 80s ribosome
c4ujra_ ribosome Chain: A: 60s ribosomal protein l15-a; crystal structure of lactimidomycin bound to the yeast 80s ribosome
c4ukha_ ribosome Chain: A: 60s ribosomal protein l15-a; crystal structure of blasticidin s bound to the yeast 80s ribosome
c4ukjN_ ribosome Chain: N: 60s ribosomal protein l24-a; crystal structure of blasticidin s bound to the yeast 80s ribosome
c4p65C_ hormone Chain: C: insulin; crystal structure of an cyclohexylalanine substituted insulin analog.
c4rhpB_ biosynthetic protein Chain: B: ubiquinone biosynthesis protein coq9, mitochondrial; crystal structure of human coq9 in complex with a phospholipid,2 northeast structural genomics consortium target hr5043
c4pj0y_ oxidoreductase, electron transport Chain: Y: photosystem ii reaction center protein ycf12; structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
c4pndD_ de novo protein Chain: D: cc-pent_variant; a de novo designed pentameric coiled coil cc-pent_variant
c4cmrB_ hydrolase Chain: B: glycosyl hydrolase/deacetylase family protein; the crystal structure of novel exo-type maltose-forming2 amylase(py04_0872) from pyrococcus sp. st04
c3j8bM_ translation Chain: M: eukaryotic translation initiation factor 3 subunit m; model of the human eif3 pci-mpn octamer docked into the 43s-hcv ires2 em map
c4ujtO_ ribosome Chain: O: 60s ribosomal protein l24-a; crystal structure of lactimidomycin bound to the yeast 80s ribosome
c4qa8A_ lipid transport Chain: A: putative lipoprotein lprf; crystal structure of lprf from mycobacterium bovis
c4uk6a_ ribosome Chain: A: 60s ribosomal protein l15-a; crystal structure of cca trinucleotide bound to the yeast 80s ribosome
c4uxvA_ cell cycle Chain: A: septation ring formation regulator ezra; cytoplasmic domain of bacterial cell division protein ezra
c4ukba_ ribosome Chain: A: 60s ribosomal protein l15-a; crystal structure of cycloheximide bound to the yeast 80s ribosome
c4pn9D_ de novo protein Chain: D: cc-hex2; a de novo designed hexameric coiled coil cc-hex2
c4ujjf_ ribosome Chain: F: 60s ribosomal protein l15-a; crystal structure of narciclasine bound to the yeast 80s ribosome
c4pnaG_ de novo protein Chain: G: cc-hept; a de novo designed heptameric coiled coil cc-hept
c4pj0t_ oxidoreductase, electron transport Chain: T: photosystem ii reaction center protein t; structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
c4pndA_ de novo protein Chain: A: cc-pent_variant; a de novo designed pentameric coiled coil cc-pent_variant
c4ujof_ ribosome Chain: F: 60s ribosomal protein l15-a; crystal structure of lycorine bound to the yeast 80s ribosome
c4pnbA_ de novo protein Chain: A: cc-hex3; a de novo designed hexameric coiled coil cc-hex3
c4ukyf_ ribosome Chain: F: 60s ribosomal protein l15-a; crystal structure of edeine bound to the yeast 80s ribosome
c4ulga_ ribosome Chain: A: 60s ribosomal protein l15-a; crystal structure of pactamycin bound to the yeast 80s ribosome
c3j8cM_ translation Chain: M: eukaryotic translation initiation factor 3 subunit m; model of the human eif3 pci-mpn octamer docked into the 43s em map
c4pn8D_ de novo protein Chain: D: cc-pent; a de novo designed pentameric coiled coil cc-pent.
c4pnbC_ de novo protein Chain: C: cc-hex3; a de novo designed hexameric coiled coil cc-hex3
c4ukra_ ribosome Chain: A: 60s ribosomal protein l15-a; crystal structure of deoxynivalenol bound to the yeast 80s ribosome
c4pj0l_ oxidoreductase, electron transport Chain: L: photosystem ii reaction center protein l; structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
c4uktf_ ribosome Chain: F: 60s ribosomal protein l15-a; crystal structure of deoxynivalenol bound to the yeast 80s ribosome
c4pn9E_ de novo protein Chain: E: cc-hex2; a de novo designed hexameric coiled coil cc-hex2
c4tshA_ cell adhesion Chain: A: surface protein adhesin; a novel protein fold forms an intramolecular lock to stabilize the2 tertiary structure of streptococcus mutans adhesin p1
c4pndE_ de novo protein Chain: E: cc-pent_variant; a de novo designed pentameric coiled coil cc-pent_variant
c4ujye_ ribosome Chain: E: 60s ribosomal protein l15-a; crystal structure of t-2 toxin bound to the yeast 80s ribosome
c4pnaC_ de novo protein Chain: C: cc-hept; a de novo designed heptameric coiled coil cc-hept
c3j8bE_ translation Chain: E: eukaryotic translation initiation factor 3 subunit e; model of the human eif3 pci-mpn octamer docked into the 43s-hcv ires2 em map
c4ujyN_ ribosome Chain: N: 60s ribosomal protein l24-a; crystal structure of t-2 toxin bound to the yeast 80s ribosome
c4p4sA_ antiviral protein/hyrolase Chain: A: interferon-induced gtp-binding protein mx1; gmppcp-bound stalkless-mxa
c3j8bL_ translation Chain: L: eukaryotic translation initiation factor 3 subunit l; model of the human eif3 pci-mpn octamer docked into the 43s-hcv ires2 em map


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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