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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Oct 18

Fold library idPDB HeaderMoleculeTitle
c4ur1A_ oxidoreductase Chain: A: tetrachloroethene reductive dehalogenase catalytic crystal structure of the pce reductive dehalogenase from s.2 multivorans in complex with dibromoethene
c4uuwA_ biosynthetic protein Chain: A: cina-like protein; competence or damage-inducible protein cina from thermus thermophilus
c4rhcH_ lyase Chain: H: 3-dehydroquinate dehydratase; crystal structure of 3-dehydroquinate dehydratase from acinetobacter2 baumannii at 2.68 a resolution
c4qx6A_ oxidoreductase Chain: A: glyceraldehyde 3-phosphate dehydrogenase; crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 streptococcus agalactiae nem316 at 2.46 angstrom resolution
c3j7wF_ virus Chain: F: major capsid protein 10a; capsid expansion mechanism of bacteriophage t7 revealed by multi-state2 atomic models derived from cryo-em reconstructions
c4c7uB_ oxidoreductase Chain: B: superoxide dismutase [mn] 1, mitochondrial; crystal structure of manganese superoxide dismutase from2 arabidopsis thaliana
c2m9kA_ rna binding protein Chain: A: rna-binding protein with multiple splicing 2; rbpms2-nter
c4w8wB_ hydrolase Chain: B: crispr system cmr subunit cmr4; crystal structure of oligomeric cmr4 from pyrococcus furiosus
c4rfaA_ transcription regulator Chain: A: lmo0740 protein; crystal structure of cyclic nucleotide-binding domain containing2 protein from listeria monocytogenes egd-e
c4nswB_ protein transport Chain: B: arf-gap with coiled-coil, ank repeat and ph domain- crystal structure of the bar-ph domain of acap1
c4uneC_ hormone Chain: C: insulin a chain; human insulin b26phe mutant crystal structure
c4nrhB_ chaperone/protein binding Chain: B: chaperone sycd; copn-scc3 complex
c4r6uA_ immune system Chain: A: interleukin-18 receptor 1; il-18 receptor complex
c4cnjD_ oxidoreductase Chain: D: l-amino acid oxidase; l-aminoacetone oxidase from streptococcus oligofermentans2 belongs to a new 3-domain family of bacterial flavoproteins
c4mmoB_ hydrolase Chain: B: sso-cp2 metallo-carboxypetidase; the crystal structure of a m20 family metallo-carboxypeptidase sso-cp22 from sulfolobus solfataricus
c4ungA_ hormone Chain: A: insulin a chain; human insulin b26asn mutant crystal structure
c4uozC_ hydrolase Chain: C: beta-galactosidase; beta-(1,6)-galactosidase from bifidobacterium animalis2 subsp. lactis bl-04 nucleophile mutant e324a in complex3 with galactose
c4rbdU_ ribosome/antibiotic Chain: U: 30s ribosomal protein thx; crystal structure of the thermus thermophilus 70s ribosome in complex2 with pactamycin (co-crystallized), mrna and deacylated trna in the p3 site
c4rasC_ oxidoreductase Chain: C: oxidoreductase, nad-binding/iron-sulfur cluster-binding reductive dehalogenase structure suggests a mechanism for b12-2 dependent dehalogenation
c4rbhU_ ribosome/antibiotic Chain: U: 30s ribosomal protein thx; crystal structure of the thermus thermophilus 70s ribosome in complex2 with negamycin, mrna and three deacylated trnas in the a, p and e3 sites
c2rukA_ transcription Chain: A: cellular tumor antigen p53; solution structure of the complex between p53 transactivation domain 22 and tfiih p62 ph domain
c4czuC_ transferase Chain: C: cbl-interacting serine/threonine-protein kinase 23; crystal structure of the kinase domain of snrk3.23 at1g302702 t190d mutant
c4d28A_ transferase Chain: A: cbl-interacting serine/threonine-protein kinase 24; crystal structure of the kinase domain of snrk3.11 at5g35410
c4o88A_ hydrolase Chain: A: n-tagged nuclease; crystal structure of a c-tagged nuclease
c4qplC_ ligase Chain: C: e3 ubiquitin-protein ligase rnf146; crystal structure of rnf146(ring-wwe)/ubch5a/iso-adpr complex
c4rbfU_ ribosome/antibiotic Chain: U: 30s ribosomal protein thx; crystal structure of the thermus thermophilus 70s ribosome in complex2 with pactamycin (co-crystallized), mrna and deacylated trna in the p3 site
c4v06A_ oxidoreductase Chain: A: tryptophan 5-hydroxylase 2; crystal structure of human tryptophan hydroxylase 2 (tph2),2 catalytic domain
c4ltuB_ electron transport Chain: B: ferredoxin; crystal structure of ferredoxin from rhodopseudomonas palustris haa2
c4w8yA_ rna binding protein Chain: A: crispr system cmr subunit cmr2; structure of full length cmr2 from pyrococcus furiosus (manganese2 bound form)
c4qpgB_ virus Chain: B: capsid protein vp0; crystal structure of empty hepatitis a virus
c4u32X_ hydrolase/hydrolase inhibitor Chain: X: kunitz-type protease inhibitor 2; human mesotrypsin complexed with hai-2 kunitz domain 1
c4qpgC_ virus Chain: C: capsid protein vp3; crystal structure of empty hepatitis a virus
c4utwB_ isomerase Chain: B: putative n-acetylmannosamine-6-phosphate 2-epimerase; structural characterisation of nane, mannac6p c2 epimerase,2 from clostridium perfingens
c4w8vA_ rna binding protein Chain: A: crispr system cmr subunit cmr6; crystal structure of cmr6 from pyrococcus furiosus
c4w8xA_ rna binding protein Chain: A: crispr system cmr subunit cmr1-1; crystal structure of cmr1 from pyrococcus furiosus bound to a2 nucleotide
c4rg1A_ transferase Chain: A: c9orf114; methyltransferase domain of c9orf114
c4rb7U_ ribosome/antibiotic Chain: U: 30s ribosomal protein thx; crystal structure of the thermus thermophilus 70s ribosome in complex2 with amicoumacin, mrna and three deacylated trnas in the a, p and e3 sites
c4raaA_ structural genomics, unknown function Chain: A: putative exported protein; crystal structure of a putative exported protein (bf0058) from2 bacteroides fragilis nctc 9343 at 2.60 a resolution
c2mf3A_ toxin Chain: A: u2-segestritoxin-sf1a; sgtx-sf1a
c4tqlA_ de novo protein Chain: A: three helix bundle; computationally designed three helix bundle
c4rgbB_ oxidoreductase Chain: B: carveol dehydrogenase; crystal structure of a putative carveol dehydrogenase from2 mycobacterium avium bound to nad
c4unhA_ hormone Chain: A: insulin a chain; human insulin b26gly mutant crystal structure
c4qpgA_ virus Chain: A: capsid protein vp1; crystal structure of empty hepatitis a virus
c4q9mA_ transferase/transferase inhibitor Chain: A: isoprenyl transferase; crystal structure of upps in complex with fpp and an allosteric2 inhibitor
c3j7y6_ ribosome Chain: 6: ml38; structure of the large ribosomal subunit from human mitochondria
c4ungC_ hormone Chain: C: insulin a chain; human insulin b26asn mutant crystal structure
c3j7yf_ ribosome Chain: F: ul4; structure of the large ribosomal subunit from human mitochondria
c4rbbU_ ribosome/antibiotic Chain: U: 30s ribosomal protein thx; crystal structure of the thermus thermophilus 70s ribosome in complex2 with pactamycin (soaked), mrna and three deacylated trnas in the a, p3 and e sites
c4uneA_ hormone Chain: A: insulin a chain; human insulin b26phe mutant crystal structure
c4n77A_ rna binding protein Chain: A: uncharacterized protein; crystal structure of cas protein
c4rb9U_ ribosome/antibiotic Chain: U: 30s ribosomal protein thx; crystal structure of the thermus thermophilus 70s ribosome in complex2 with pactamycin (soaked), mrna and three deacylated trnas in the a, p3 and e sites
c4rb5U_ ribosome/antibiotic Chain: U: 30s ribosomal protein thx; crystal structure of the thermus thermophilus 70s ribosome in complex2 with amicoumacin, mrna and three deacylated trnas in the a, p and e3 sites
c2ruhA_ peptide binding protein Chain: A: e3 ubiquitin-protein ligase mdm2; chemical shift assignments for mip and mdm2 in bound state
c4rbjU_ ribosome/antibiotic Chain: U: 30s ribosomal protein thx; crystal structure of the thermus thermophilus 70s ribosome in complex2 with negamycin, mrna and three deacylated trnas in the a, p and e3 sites
c4qpiA_ virus Chain: A: capsid protein vp1; crystal structure of hepatitis a virus
c3j7y4_ ribosome Chain: 4: bl36; structure of the large ribosomal subunit from human mitochondria


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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