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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Oct 11

Fold library idPDB HeaderMoleculeTitle
c4uszA_ oxidoreductase Chain: A: vanadium-dependent haloperoxidase; crystal structure of the first bacterial vanadium dependant2 iodoperoxidase
c4wiwB_ hydrolase Chain: B: glycoside hydrolase family 18; crystal structure of c-terminal domain of putative chitinase from2 desulfitobacterium hafniense dcb-2
c4n45B_ transferase Chain: B: acetyl-coa acetyltransferase; crystal structure of reduced form of thiolase from clostridium2 acetobutylicum
c2ru8A_ replication Chain: A: primosomal protein 1; dnat c-terminal domain
c4qiwA_ transcription Chain: A: dna-directed rna polymerase; crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
c4w7bG_ lyase Chain: G: hydratase chsh1; crystal structure of the chsh1:chsh2: complex from mycobacterium2 tuberculosis
c3wz2C_ chaperone Chain: C: uncharacterized protein; crystal structure of pyrococcus furiosus pbaa, an archaeal homolog of2 proteasome-assembly chaperone
c2mhhA_ metal binding protein Chain: A: polycystic kidney disease protein 2; solution structure of a ef-hand domain from sea urchin polycystin-2
c4v1ap_ ribosome Chain: P: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c4v1aq_ ribosome Chain: Q: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c4w91C_ transferase Chain: C: aminotransferase; crystal structure of a cysteine desulfurase sufs from brucella suis2 bound to plp
c3wqtB_ structural genomics Chain: B: cell division protein ftsa; staphylococcus aureus ftsa complexed with amppnp
c4quvB_ oxidoreductase, membrane protein Chain: B: delta(14)-sterol reductase; structure of an integral membrane delta(14)-sterol reductase
c4qjvC_ transferase Chain: C: dna-directed rna polymerase subunit d; the x-ray crystal structure of rpo3/rpo11 heterodimer of euryarchaeal2 rna polymerase from thermococcus kodakarensis
c4tn0C_ transferase Chain: C: upf0141 protein yjdb; crystal structure of the c-terminal periplasmic domain of2 phosphoethanolamine transferase eptc from campylobacter jejuni
c4r7zB_ hydrolase Chain: B: cell division control protein 21; pfmcm-aaa double-octamer
c4pmuD_ hydrolase Chain: D: endo-1,4-beta-xylanase a; crystal structure of a novel family 10 glycoside hydrolase (space2 group p1211)
c4v193_ ribosome Chain: 3: mitoribosomal protein ul30m, mrpl30; PDB Fragment:cca-3' end;
c4v19U_ ribosome Chain: U: mitoribosomal protein bl20m, mrpl20; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4u0gG_ hydrolase/antibiotic Chain: G: atp-dependent clp protease proteolytic subunit 2; crystal structure of m. tuberculosis clpp1p2 bound to adep and agonist
c4csdA_ fucose-binding protein Chain: A: fucose-binding lectin protein; structure of monomeric ralstonia solanacearum lectin
c4r86B_ protein transport Chain: B: rnd family aminoglycoside/multidrug efflux pump; crystal structure of aminoglycoside/multidrug efflux system acrd from2 salmonella typhimurium
c2mueA_ cell invasion Chain: A: merozoite surface protein 1; structure immunogenicity and protectivity relationship for the 15852 malarial peptide and its substitution analogues
c4pmnB_ unknown function Chain: B: tat-secreted protein rv2525c; crystal structure of the mycobacterium tuberculosis tat-secreted2 protein rv2525c in complex with mes (monoclinic crystal form i)
c4njmA_ oxidoreductase Chain: A: d-3-phosphoglycerate dehydrogenase, putative; crystal structure of phosphoglycerate bound 3-phosphoglycerate2 dehydrogenase in entamoeba histolytica
c4v1ah_ ribosome Chain: H: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c4r3zB_ protein binding/ligase Chain: B: arginine--trna ligase, cytoplasmic; translation complex
c4wjbB_ hydrolase Chain: B: putative amidohydrolase/peptidase; x-ray crystal structure of a putative amidohydrolase/peptidase from2 burkholderia cenocepacia
c4tvpB_ viral protein/immune system Chain: B: envelope glycoprotein gp160; structure of bg505 sosip.664 in complex with broadly neutralizing2 antibodies, pgt122 and 35o22
c4w7bD_ lyase Chain: D: hydratase chsh2; crystal structure of the chsh1:chsh2: complex from mycobacterium2 tuberculosis
c4v1aw_ ribosome Chain: W: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c4urgB_ lyase Chain: B: diguanylate cyclase; crystal structure of ggdef domain from t.maritima (active-like dimer)
c4qawA_ hydrolase Chain: A: xyn30d; structure of modular xyn30d from paenibacillus barcinonensis
c4v19I_ ribosome Chain: I: mitoribosomal protein bl9m, mrpl9; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4qmgD_ transcription Chain: D: staphylococcal nuclease domain-containing protein 1; the structure of mtdh-snd1 complex reveals novel cancer-promoting2 interactions
c4qxfB_ membrane protein Chain: B: leucine-rich repeat-containing g-protein coupled receptor crystal structure of human lgr4 and rspo1
c4uy5A_ transferase Chain: A: histidine-specific methyltransferase egtd; crystal structure of histidine-specific methyltransferase2 egtd from mycobacterium smegmatis
c4npfY_ protein binding Chain: Y: immunoglobulin g-binding protein a; high-resolution structure of two tandem b domains of staphylococcal2 protein a connected by the conserved linker
c4q2sA_ rna binding protein Chain: A: pdc1 ge1 domain; crystal structure of s. pombe pdc1 ge1 domain
c4pmyB_ hydrolase Chain: B: xylanase; structure of a novel bacterial xylanase complexed with xylose
c4v198_ ribosome Chain: 8: mitoribosomal protein bl35m, mrpl35; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4qiwU_ transcription Chain: U: dna-directed rna polymerase subunit l; crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
c4r9zB_ hydrolase Chain: B: uncharacterized protein; mycobacterium avium subs paratuberculosis tesb protein map1729c
c4qiwH_ transcription Chain: H: dna-directed rna polymerase subunit h; crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
c4v1ae_ ribosome Chain: E: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c3wh9A_ hydrolase Chain: A: endo-beta-1,4-mannanase; the ligand-free structure of manbk from aspergillus niger bk01
c4v194_ ribosome Chain: 4: mitoribosomal protein bl31m, mrpl55; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4r3zA_ protein binding/ligase Chain: A: aminoacyl trna synthase complex-interacting multifunctional translation complex
c4v19V_ ribosome Chain: V: mitoribosomal protein bl21m, mrpl21; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4v1al_ ribosome Chain: L: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c4qiwF_ transcription Chain: F: dna-directed rna polymerase, subunit f; crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
c4v191_ ribosome Chain: 1: mitoribosomal protein bl28m, mrpl28; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4v19F_ ribosome Chain: F: mitoribosomal protein ul4m, mrpl4; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4v1av_ ribosome Chain: V: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c4twrA_ isomerase Chain: A: nad binding site:nad-dependent epimerase/dehydratase:udp- structure of udp-glucose 4-epimerase from brucella abortus
c4uc0A_ transferase Chain: A: purine nucleoside phosphorylase; crystal structure of a purine nucleoside phosphorylase (psi-nysgrc-2 029736) from agrobacterium vitis
c4v1an_ ribosome Chain: N: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c4qiwC_ transcription Chain: C: dna-directed rna polymerase subunit a''; crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
c4v1af_ ribosome Chain: F: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c4qiwV_ transcription Chain: V: dna-directed rna polymerase subunit n; crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
c4v19S_ ribosome Chain: S: mitoribosomal protein ul18m, mrpl18; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4qiwP_ transcription Chain: P: dna-directed rna polymerase subunit p; crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
c4c7vA_ transferase Chain: A: transketolase; apo tranksetolase from lactobacillus salivarius at 2.2a resolution
c4v192_ ribosome Chain: 2: mitoribosomal protein ul29m, mrpl47; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4v1ak_ ribosome Chain: K: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c4v1ao_ ribosome Chain: O: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c4qiwB_ transcription Chain: B: dna-directed rna polymerase; crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
c4v19W_ ribosome Chain: W: mitoribosomal protein ul22m, mrpl22; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4whiA_ hydrolase Chain: A: beta-lactamase; crystal structure of c-terminal domain of penicillin binding protein2 rv0907
c4r3zC_ protein binding/ligase Chain: C: glutamine--trna ligase; translation complex
c4wecA_ oxidoreductase Chain: A: short chain dehydrogenase; crystal structure of a short chain dehydrogenase from mycobacterium2 smegmatis
c4rbmA_ hydrolase Chain: A: lys-gingipain w83; porphyromonas gingivalis gingipain k (kgp) catalytic and2 immunoglobulin superfamily-like domains
c4qiwT_ transcription Chain: T: dna-directed rna polymerase subunit k; crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
c4v19R_ ribosome Chain: R: mitoribosomal protein bl17m, mrpl17; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4v1aj_ ribosome Chain: J: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c4v1ad_ ribosome Chain: D: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c4pkeA_ membrane protein Chain: A: protein c10c5.1, isoform i; the structure of a conserved piezo channel domain reveals a novel beta2 sandwich fold
c4v19Q_ ribosome Chain: Q: mitoribosomal protein ul16m, mrpl16; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4v19E_ ribosome Chain: E: mitoribosomal protein ul3m, mrpl3; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4v190_ ribosome Chain: 0: mitoribosomal protein bl27m, mrpl27; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4v1ac_ ribosome Chain: C: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c4v1au_ ribosome Chain: U: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c4v19Y_ ribosome Chain: Y: mitoribosomal protein ul24m, mrpl24; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4v1am_ ribosome Chain: M: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c4qiwE_ transcription Chain: E: dna-directed rna polymerase, subunit e'; crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
c4novA_ hydrolase Chain: A: xylosidase/arabinofuranosidase xsa43e; xsa43e, a gh43 family enzyme from butyrivibrio proteoclasticus
c4onhA_ immune system Chain: A: t-cell receptor beta; crystal structure of dn6 tcr
c4v19P_ ribosome Chain: P: mitoribosomal protein ul15m, mrpl15; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4qtnB_ transport protein Chain: B: nicotinamide riboside transporter pnuc; crystal structure of the vitamin b3 transporter pnuc
c4wd2A_ transferase Chain: A: aromatic-amino-acid transaminase tyrb; crystal structure of an aromatic amino acid aminotransferase from2 burkholderia cenocepacia j2315
c4v1ag_ ribosome Chain: G: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c4v19T_ ribosome Chain: T: mitoribosomal protein bl19m, mrpl19; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4v195_ ribosome Chain: 5: mitoribosomal protein bl32m, mrpl32; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4v1ab_ ribosome Chain: B: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c4v1ai_ ribosome Chain: I: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c4v19N_ ribosome Chain: N: mitoribosomal protein ul13m, mrpl13; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4v1aa_ ribosome Chain: A: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c4npsA_ cell adhesion Chain: A: bartonella effector protein (bep) substrate of virb t4ss; crystal structure of bep1 protein (virb-translocated bartonella2 effector protein) from bartonella clarridgeiae
c4tvpG_ viral protein/immune system Chain: G: envelope glycoprotein gp160; structure of bg505 sosip.664 in complex with broadly neutralizing2 antibodies, pgt122 and 35o22
c4v1at_ ribosome Chain: T: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2
c4v19X_ ribosome Chain: X: mitoribosomal protein ul23m, mrpl23; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4rfqA_ transferase Chain: A: histidine protein methyltransferase 1 homolog; human methyltransferase-like 18
c4v19J_ ribosome Chain: J: mitoribosomal protein ul10m, mrpl10; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2
c4v19D_ ribosome Chain: D: mitoribosomal protein ul2m, mrpl2; structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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