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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Oct 04

Fold library idPDB HeaderMoleculeTitle
c4mt8A_ transferase Chain: A: ethylene response sensor 1; structure of the ers1 dimerization and histidine phosphotransfer2 domain from arabidopsis thaliana
c4my5C_ transferase Chain: C: putative amino acid aminotransferase; crystal structure of the aromatic amino acid aminotransferase from2 streptococcus mutants
c4c76A_ oxidoreductase Chain: A: fmn reductase (nadph); crystal structure of the fmn-reductase msue from pseudomonas putida2 kt2440.
c4urjA_ unknown function Chain: A: protein fam83a; crystal structure of human bj-tsa-9
c4r7vA_ protein binding Chain: A: arrestin domain-containing protein 3; crystal structure of n-lobe of human arrdc3(1-165)
c4r1sB_ oxidoreductase Chain: B: cinnamoyl coa reductase; crystal structure of petunia hydrida cinnamoyl-coa reductase
c2ml2A_ isomerase Chain: A: poly(beta-d-mannuronate) c5 epimerase 6; solution structure of alge6r2 subunit from the azotobacter vinelandii2 mannuronan c5-epimerase
c4txoB_ oxidodreductase/copper binding protein Chain: B: blr1131 protein; crystal structure of the mixed disulfide complex of thioredoxin-like2 tlpas(c110s) and copper chaperone scois(c74s)
c4oetA_ transport protein Chain: A: putative peptide abc-transport system periplasmic peptide- crystal structure of nikz from campylobacter jejuni, unliganded form
c4rd8B_ structural genomics, unknown function Chain: B: uncharacterized protein; the crystal structure of a functionally-unknown protein from2 legionella pneumophila subsp. pneumophila str. philadelphia 1
c4wd7A_ membrane protein Chain: A: bestrophin domain protein; crystal structure of a bacterial bestrophin homolog from klebsiella2 pneumoniae by zn-sad phasing
c4qukA_ oxidoreductase Chain: A: dihydroflavonol-4-reductase; crystal structure of cinnamyl-alcohol dehydrogenase 2 mutant k169a
c4mxbB_ hydrolase/antibiotic Chain: B: bel-1; crystal structure of extended-spectrum beta-lactamase bel-1 in complex2 with imipenem
c4phxE_ cell adhesion Chain: E: protein aggb; crystal structure of aggb, the minor subunit of aggregative adherence2 fimbriae type i from the escherichia coli o4h104
c3wv4B_ ligase Chain: B: non-ribosomal peptide synthetase; crystal structure of vinn
c4r1kA_ structural genomics, unknown function Chain: A: uncharacterized protein; crystal structure of a hypothetical protein (eubsir_01394) from2 eubacterium siraeum dsm 15702 at 2.56 a resolution
c4qjtu_ ribosome Chain: U: crystal structure of the thermus thermophilus 70s ribosome bound with2 elongation factor 4, 30s subunit of the 70s ribosome
c4ux8A_ signaling protein Chain: A: proto-oncogene tyrosine-protein kinase receptor ret; ret recognition of gdnf-gfralpha1 ligand by a composite binding site2 promotes membrane-proximal self-association
c4d01A_ signaling protein Chain: A: neuronal acetylcholine receptor subunit alpha-9; crystal structure of the extracellular domain of the human2 alpha9 nicotinic acetylcholine receptor
c4davA_ hydrolase/dna Chain: A: sugar fermentation stimulation protein homolog; the structure of pyrococcus furiosus sfsa in complex with dna
c4qasB_ hydrolase Chain: B: ct263; 1.27 a resolution structure of ct263-d161n (mtan) from chlamydia2 trachomatis
c4rciC_ rna binding protein Chain: C: yth domain-containing family protein 1; crystal structure of ythdf1 yth domain
c4mtkD_ toxin Chain: D: vgrg1; crystal structure of pa0091 vgrg1, the central spike of the type vi2 secretion system
c4w2cV_ ribosome/ribosome inhibitor Chain: V: 30s ribosomal protein thx; crystal structure of the peptolide 12c bound to bacterial ribosome
c2mdwA_ de novo protein Chain: A: designed protein; nmr structure of a strand-swapped dimer of the ww domain
c4oerA_ transport protein Chain: A: nika protein; crystal structure of nika from brucella suis, unliganded form
c4usqA_ oxidoreductase Chain: A: pyridine nucleotide-disulfide oxidoreductase; structure of flavin-containing monooxygenase from2 cellvibrio sp. br
c4v0pA_ immune system Chain: A: melanoma-associated antigen 3; crystal structure of the mage homology domain of human mage-a3
c4n81A_ hydrolase Chain: A: inositol monophosphatase; another flexible region at the active site of an inositol2 monophosphatase from zymomonas mobilis
c4clvB_ metal binding protein Chain: B: nickel-cobalt-cadmium resistance protein nccx; crystal structure of dodecylphosphocholine-solubilized nccx2 from cupriavidus metallidurans 31a
c2ml3A_ isomerase Chain: A: poly(beta-d-mannuronate) c5 epimerase 6; solution structure of alge6r3 subunit from the azotobacter vinelandii2 mannuronan c5-epimerase
c4umgA_ structural protein Chain: A: protein lin-41; crystal structure of the lin-41 filamin domain
c4w2aV_ ribosome/ribosome inhibitor Chain: V: 30s ribosomal protein thx; crystal structure of the peptolide 12c bound to bacterial ribosome
c2mdvB_ de novo protein Chain: B: designed protein; nmr structure of beta alpha alpha 38
c3wwvA_ unknown function Chain: A: stomatin operon partner protein; c-terminal domain of stomatin operon partner protein 1510-c from2 pyrococcus horikoshii
c4ospD_ oxidoreductase/antibiotic Chain: D: oxygenase-reductase; the crystal structure of urdamycin c-6 ketoreductase domain urdmred2 with bound nadp and rabelomycin
c4tr1A_ oxidoreductase Chain: A: glutaredoxin 3; crystal structure of gsh-bound cgrx2/c15s
c4ph8B_ cell adhesion Chain: B: aggregative adherence fimbrial subunit agga; crystal structure of agga, the major subunit of aggregative adherence2 fimbriae type i (aaf/i) from the escherichia coli o4h104
c4rd7A_ unknown function Chain: A: cupin 2 conserved barrel domain protein; the crystal structure of a cupin 2 conserved barrel domain protein2 from salinispora arenicola cns-205
c2mugA_ peptide binding protein Chain: A: serine-repeat antigen protein; protective cellular immunity against p. falciparum malaria merozoite2 is associated with a different p7 and p8 residue orientation in the3 mhc-peptide-tcr complex
c4qs3e_ ribosome/antibiotic Chain: E: 50s ribosomal protein l3; 70s ribosome translocation intermediate containing elongation factor2 efg/gdp/fusidic acid, mrna, and trnas trapped in the ap/ap pe/e3 chimeric hybrid state. this entry contains the 50s ribosomal subunit4 b. the 30s subunit b can be found in 4qs2. molecule a in the same5 asymmetric unit is deposited as 4qs0 (30s) and 4qs1 (50s)
c4r7sA_ structural genomics, unknown function Chain: A: tetratricopeptide repeat protein; crystal structure of a tetratricopeptide repeat protein (parmer_03812)2 from parabacteroides merdae atcc 43184 at 2.39 a resolution
c4w4iA_ protein transport Chain: A: esx-3 secretion-associated protein espg3; crystal structure of espg3 from the esx-3 type vii secretion system of2 m. tuberculosis
c4qs1e_ ribosome Chain: E: 50s ribosomal protein l3; 70s ribosome translocation intermediate containing elongation factor2 efg/gdp/fusidic acid, mrna, and trnas trapped in the ap/ap pe/e3 chimeric hybrid state. this entry contains the 50s ribosomal subunit4 a. the 30s subunit a can be found in 4qs0. molecule b in the same5 asymmetric unit is deposited as 4qs2 (30s) and 4qs3 (50s)
c4txvB_ protein binding Chain: B: cytochrome c oxidase subunit 2; crystal structure of the mixed disulfide intermediate between2 thioredoxin-like tlpas(c110s) and subunit ii of cytochrome c oxidase3 coxbpd (c233s)
c4qjty_ ribosome Chain: Y: crystal structure of the thermus thermophilus 70s ribosome bound with2 elongation factor 4, 30s subunit of the 70s ribosome
c4o8vA_ transferase Chain: A: alginate biosynthesis protein algj; o-acetyltransferase domain of pseudomonas putida algj
c4wghA_ oxidoreductase Chain: A: aldehyde reductase; crystal structure of aldo/keto reductase from klebsiella pneumoniae in2 complex with nadp and acetate at 1.8 a resolution
c2mrfA_ ligase Chain: A: e3 ubiquitin-protein ligase rad18; nmr structure of the ubiquitin-binding zinc finger (ubz) domain from2 human rad18
c4mtmA_ structural protein Chain: A: putative tail fiber protein; crystal structure of the tail fiber gp53 from acinetobacter baumannii2 bacteriophage ap22
c3wvsA_ oxidoreductase Chain: A: putative monooxygenase; crystal structure of cytochrome p450revi
c4ux8E_ signaling protein Chain: E: gdnf family receptor alpha-1; ret recognition of gdnf-gfralpha1 ligand by a composite binding site2 promotes membrane-proximal self-association
c4uyiA_ hydrolase Chain: A: structure-specific endonuclease subunit slx4; crystal structure of the btb domain of human slx4 (btbd12)
c4w7gA_ motor protein Chain: A: dynein light intermediate chain; crystal structure of the dynein light intermediate chain's conserved2 domain
c4usrA_ oxidoreductase Chain: A: monooxygenase; structure of flavin-containing monooxygenase from2 pseudomonas stutzeri nf13


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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