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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Aug 23

Fold library idPDB HeaderMoleculeTitle
c2mliA_ hormone Chain: A: insulin; nmr structure of b25-(alpha, beta)-dehydro-phenylalanine insulin
c4njcE_ transcription Chain: E: geobacillus stearothermophilus ykzg; rna polymerase interacting protein ykzg from geobacillus2 stearothermophilus
c4nwwC_ virus Chain: C: capsid protein; crystal structure of an n-terminally truncated capsid protein mutant2 of orsay virus
c2mfzA_ structural protein Chain: A: minor ampullate spidroin; nmr structure of c-terminal domain from a. ventricosus minor ampullate2 spidroin (misp)
c4ozuA_ structural protein Chain: A: coronin; crystal structure of wd40 domain from toxoplasma gondii coronin
c4tkzA_ transferase Chain: A: putative uncharacterized protein gbs1890; crystal structure of phosphotransferase system component eiia from2 streptococcus agalactiae
c4qpvB_ structural genomics, unknown function Chain: B: uncharacterized protein; crystal structure of a hypothetical protein (sav1486) from2 staphylococcus aureus subsp. aureus mu50 at 1.80 a resolution
c3wgzB_ oxidoreductase Chain: B: meso-diaminopimelate dehydrogenase; crystal structure of meso-dapdh q154l/t173i/r199m/p248s/h249n/n276s2 mutant with d-leucine of from clostridium tetani e88
c4qkbA_ oxidoreductase Chain: A: alpha-ketoglutarate-dependent dioxygenase alkb homolog 7, crystal structure of seleno-methionine labelled human alkbh7 in2 complex with alpha-ketoglutarate and mn(ii)
c4qucA_ protein binding Chain: A: re36324p; crystal structure of chromodomain of rhino
c4qqxA_ hydrolase/dna Chain: A: crispr-associated helicase, cas3 family; crystal structure of t. fusca cas3-atp
c3wi3B_ replication regulator Chain: B: dna replication regulator sld3; crystal structure of the sld3/treslin domain from yeast sld3
c2mi7A_ de novo protein Chain: A: de novo protein a3y; solution nmr structure of alpha3y
c4qcsU_ ribosome Chain: U: 30s ribosomal protein thx; crystal structure of the thermus thermophilus 70s ribosome in the2 post-catalysis state of peptide bond formation containing dipeptydil-3 trna in the a site and deacylated trna in the p site. this entry4 contains the 30s subunit of the second 70s ribosome in the asu.
c4malB_ unknown function Chain: B: motility protein fimv; tpr2 of fimv from p. aeruginosa (pao1)
c4pv1H_ electron transport/inhibitor Chain: H: cytochrome b6-f complex subunit 8; cytochrome b6f structure from m. laminosus with the quinone analog2 inhibitor stigmatellin
c4r1hA_ transcription regulator Chain: A: lmo0741 protein; gntr family transcriptional regulator from listeria monocytogenes
c4uvkA_ cell cycle Chain: A: zyro0d15994p; cohesin subunit scc3 from z. rouxii, 88-1035
c4uoiB_ viral protein Chain: B: genome polyprotein; unexpected structure for the n-terminal domain of hepatitis2 c virus envelope glycoprotein e1
c4cuaB_ hydrolase Chain: B: beta-galactosidase; unravelling the multiple functions of the architecturally2 intricate streptococcus pneumoniae beta-galactosidase, bgaa
c4pv1E_ electron transport/inhibitor Chain: E: cytochrome b6-f complex subunit 6; cytochrome b6f structure from m. laminosus with the quinone analog2 inhibitor stigmatellin
c4qd0U_ ribosome Chain: U: 30s ribosomal protein thx; crystal structure of the thermus thermophilus 70s ribosome in the pre-2 attack state of peptide bond formation containing short substrate-3 mimic cytidine-cytidine-puromycin in the a site and acylated trna in4 the p site. this entry contains the 30s subunit of the second 70s5 ribosome in the asu.
c4cu9A_ hydrolase Chain: A: beta-galactosidase; unravelling the multiple functions of the architecturally2 intricate streptococcus pneumoniae beta-galactosidase, bgaa
c4u3vA_ isomerase Chain: A: polyketide synthase pksr; crystal structure of the trans-acyltransferase polyketide synthase2 enoyl-isomerase
c4qcqU_ ribosome Chain: U: 30s ribosomal protein thx; crystal structure of the thermus thermophilus 70s ribosome in the2 post-catalysis state of peptide bond formation containing dipeptydil-3 trna in the a site and deacylated trna in the p site. this entry4 contains the 50s subunit of the first 70s ribosome in the asu.
c4qloA_ transferase Chain: A: homoserine o-acetyltransferase; crystal structure of homoserine o-acetyltransferase from2 staphylococcus aureus
c4c16B_ cell adhesion Chain: B: e-selectin; e-selectin lectin, egf-like and two scr domains complexed2 with glycomimetic antagonist
c4qq4A_ metal binding protein Chain: A: morc family cw-type zinc finger protein 3; cw-type zinc finger of morc3 in complex with the amino terminus of2 histone h3
c4ql4A_ lyase Chain: A: o-acetylserine lyase; crystal structure of o-acetylserine sulfhydrylase from bacillus2 anthracis
c4qyrA_ transferase Chain: A: at-less polyketide synthase; crystal structure of mgse (2542-3153) of at-less polyketide synthase2 from streptomyces platensis
c4uvjA_ cell cycle Chain: A: cohesin subunit scc3; cohesin subunit scc3 from yeast, 674-1072
c2mq8A_ de novo protein Chain: A: de novo designed protein lfr1; solution nmr structure of de novo designed protein lfr1 1 with2 ferredoxin fold, northeast structural genomics consortium (nesg)3 target or414
c2msrA_ protein binding Chain: A: histone-lysine n-methyltransferase 2a; solution structure of ledgf/p75 ibd in complex with mll1 peptide (140-2 160)
c4cucA_ hydrolase Chain: A: beta-galactosidase; unravelling the multiple functions of the architecturally2 intricate streptococcus pneumoniae beta-galactosidase,3 bgaa.
c3wx4A_ viral protein Chain: A: anti-restriction endonuclease; crystal structure of t4 phage arn protein
c4qcyU_ ribosome Chain: U: 30s ribosomal protein thx; crystal structure of the thermus thermophilus 70s ribosome in the pre-2 attack state of peptide bond formation containing short substrate-3 mimic cytidine-cytidine-puromycin in the a site and acylated trna in4 the p site. this entry contains the 30s subunit of the first 70s5 ribosome in the asu.
c4po2A_ chaperone Chain: A: heat shock 70 kda protein 1a/1b; crystal structure of the stress-inducible human heat shock protein2 hsp70 substrate-binding domain in complex with peptide substrate
c4ov9A_ transferase Chain: A: isopropylmalate synthase; structure of isopropylmalate synthase binding with alpha-2 isopropylmalate
c4qcuU_ ribosome Chain: U: 30s ribosomal protein thx; crystal structure of the thermus thermophilus 70s ribosome in the pre-2 attack state of peptide bond formation containing short substrate-3 mimic cytidine-puromycin in the a site and acylated trna in the p4 site. this entry contains the 30s subunit of the first 70s ribosome5 in the asu.
c4qcoU_ ribosome Chain: U: 30s ribosomal protein thx; crystal structure of the thermus thermophilus 70s ribosome in the pre-2 attack state of peptide bond formation containing acylated trna-3 substrates in the a and p sites. this entry contains the 30s subunit4 of the second 70s ribosome in the asu.
c4qcwU_ ribosome Chain: U: 30s ribosomal protein thx; crystal structure of the thermus thermophilus 70s ribosome in the pre-2 attack state of peptide bond formation containing short substrate-3 mimic cytidine-puromycin in the a site and acylated trna in the p4 site. this entry contains the 30s subunit of the second 70s ribosome5 in the asu.
c4u0pB_ transferase Chain: B: lipoyl synthase 2; the crystal structure of lipoyl synthase in complex with s-adenosyl2 homocysteine
c2mbvA_ transcription Chain: A: fusion protein of lim domain transcription factor lmo4 (77- lmo4-lim2 in complex with deaf1 (404-418)
c4upuB_ transferase Chain: B: inositol-trisphosphate 3-kinase a; crystal structure of calmodulin
c4qcmU_ ribosome Chain: U: 30s ribosomal protein thx; crystal structure of the thermus thermophilus 70s ribosome in the pre-2 attack state of peptide bond formation containing acylated trna-3 substrates in the a and p sites. this entry contains the 30s subunit4 of the first 70s ribosome in the asu.
c4n31A_ cell adhesion Chain: A: sipa; structure and activity of streptococcus pyogenes sipa: a signal2 peptidase homologue essential for pilus polymerisation
c4mgqA_ hydrolase Chain: A: glycosyl hydrolase family 10; pbxyn10c cbm apo


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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