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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Aug 02

Fold library idPDB HeaderMoleculeTitle
c4oloC_ electron transport Chain: C: bmc domain protein; ligand-free structure of the grpu microcompartment shell protein from2 clostridiales bacterium 1_7_47faa
c4too2_ ribosome Chain: 2: 50s ribosomal protein l34; crystal structure of the e. coli ribosome bound to linopristin. this2 file contains the 50s subunit of the second 70s ribosome with3 linopristin bound.
c4qamB_ signaling protein Chain: B: x-linked retinitis pigmentosa gtpase regulator-interacting crystal structure of the rpgr rcc1-like domain in complex with the2 rpgr-interacting domain of rpgrip1
c4pzoE_ dna binding protein Chain: E: polyhomeotic-like protein 3; crystal structure of phc3 sam l967r
c4twbB_ transferase Chain: B: ribose-phosphate pyrophosphokinase; sulfolobus solfataricus ribose-phosphate pyrophosphokinase
c4qn3B_ hydrolase Chain: B: neuraminidase; crystal structure of neuraminidase n7
c4py5A_ hydrolase/dna/rna Chain: A: ribonuclease; protein-nucleic acid complex
c4pt2B_ virus like particle Chain: B: encapsulin protein; myxococcus xanthus encpasulin protein (enca)
c4qeoA_ transcription/dna Chain: A: histone-lysine n-methyltransferase, h3 lysine-9 specific crystal structure of kryptonite in complex with mchh dna, h3(1-15)2 peptide and sah
c4qdfA_ oxidoreductase/oxidoreductase inhibitor Chain: A: 3-ketosteroid 9alpha-hydroxylase oxygenase; crystal structure of apo ksha5 and ksha1 in complex with 1,4-30q-coa2 from r. rhodochrous
c4lx4D_ hydrolase Chain: D: endoglucanase(endo-1,4-beta-glucanase)protein; crystal structure determination of pseudomonas stutzeri endoglucanase2 cel5a using a twinned data set
c4p40A_ transport protein Chain: A: copn; chlamydia pneumoniae copn
c4trbA_ transferase Chain: A: purine phosphoribosyltransferase (gpt-1); sulfolobus solfataricus adenine phosphoribosyltransferase
c4tv4C_ unknown function Chain: C: uncharacterized protein; crystal structure of a putative uncharacterized protein from2 burkholderia pseudomallei
c4lqqB_ transferase/transferase activator Chain: B: cbk1 kinase activator protein mob2; crystal structure of the cbk1(t743e)-mob2 kinase-coactivator complex2 in crystal form b
c4utqA_ protein transport Chain: A: membrane protein insertase yidc; a structural model of the active ribosome-bound2 membrane protein insertase yidc
c4pec2_ ribosome Chain: 2: 50s ribosomal protein l34; crystal structure of the e. coli ribosome bound to quinupristin. this2 file contains the 50s subunit of the second 70s ribosome with3 quinupristin bound.
c4tp92_ ribosome Chain: 2: 50s ribosomal protein l34; crystal structure of the e. coli ribosome bound to dalfopristin and2 quinupristin. this file contains the 50s subunit of the first 70s3 ribosome with dalfopristin and quinupristin bound.
c4tpsD_ replication Chain: D: chromosomal replication initiator protein dnaa; sporulation inhibitor of dna replication, sira, in complex with domain2 i of dnaa
c4tpf2_ ribosome Chain: 2: 50s ribosomal protein l34; crystal structure of the e. coli ribosome bound to flopristin and2 linopristin. this file contains the 50s subunit of the second 70s3 ribosome with flopristin and linopristin bound.
c4lugA_ hydrolase Chain: A: inorganic pyrophosphatase; crystal structure of inorganic pyrophosphatase ppa1 from arabidopsis2 thaliana
c4pkiG_ contractile protein/actin-binding protei Chain: G: gelsolin,tropomodulin-1 chimera; complex of atp-actin with the c-terminal actin-binding domain of2 tropomodulin
c4qvrA_ unknown function Chain: A: uncharacterized hypothetical protein ftt_1539c; 2.3 angstrom crystal structure of hypothetical protein ftt1539c from2 francisella tularensis.
c4qhzC_ hydrolase Chain: C: putative glycosyl hydrolase; crystal structure of a putative glycosyl hydrolase (bdi_3914) from2 parabacteroides distasonis atcc 8503 at 2.13 a resolution
c4tov2_ ribosome Chain: 2: 50s ribosomal protein l34; crystal structure of the e. coli ribosome bound to flopristin. this2 file contains the 50s subunit of the first 70s ribosome with3 flopristin bound.
c4tviB_ transferase Chain: B: aminotransferase, class iv; x-ray crystal structure of an aminotransferase from brucella abortus2 bound to the co-factor plp
c2mq3A_ contractile protein Chain: A: myosin-binding protein c, cardiac-type; nmr structure of the c3 domain of human cardiac myosin binding2 protein-c with a hypertrophic cardiomyopathy-related mutation r502w.
c3wj2A_ hydrolase Chain: A: carboxylesterase; crystal structure of estfa (fe-lacking apo form)
c4tpb2_ ribosome Chain: 2: 50s ribosomal protein l34; crystal structure of the e. coli ribosome bound to dalfopristin and2 quinupristin. this file contains the 50s subunit of the second 70s3 ribosome with dalfopristin and quinupristin bound.
c4ch7A_ transcription Chain: A: nird-like protein; crystal structure of the siroheme decarboxylase nirdl
c4lqsA_ transferase/transferase activator Chain: A: serine/threonine-protein kinase cbk1; crystal structure of the cbk1-mob2 kinase-coactivator complex
c4pkgG_ contractile protein/actin-binding protei Chain: G: gelsolin,tropomodulin-1 chimera; complex of atp-actin with the n-terminal actin-binding domain of2 tropomodulin
c4tp52_ ribosome Chain: 2: 50s ribosomal protein l34; crystal structure of the e. coli ribosome bound to virginiamycin m1.2 this file contains the 50s subunit of the first 70s ribosome with3 virginiamycin m1 bound.
c4p53A_ lyase Chain: A: cyclase; vala (2-epi-5-epi-valiolone synthase) from streptomyces hygroscopicus2 subsp. jinggangensis 5008 with nad+ and zn2+ bound
c4olpD_ electron transport Chain: D: grpu microcompartment shell protein; ligand-free structure of the grpu microcompartment shell protein from2 pectobacterium wasabiae
c4pmwB_ hydrolase/rna Chain: B: dis3-like exonuclease 2; structure of mouse dis3l2 in complex with oligou rna substrate
c4upyB_ ribosome Chain: B: eif5b; mammalian 80s hcv-ires initiation complex with eif5b pre-like state
c4ozrE_ transcription Chain: E: ecdysone receptor; crystal structure of the ligand binding domains of the bovicola ovis2 ecdysone receptor ecr/usp heterodimer (methylene lactam crystal)
c4qgkB_ oxidoreductase Chain: B: fatty aldehyde dehydrogenase; structure of the human sjogren larsson syndrome enzyme fatty aldehyde2 dehydrogenase (faldh)
c4lunU_ rna binding protein Chain: U: nonsense-mediated mrna decay protein 2; structure of a mrna decay factor
c4jjjA_ hydrolase Chain: A: cellulose 1,4-beta-cellobiosidase; the structure of t. fusca gh48 d224n mutant
c4qdyA_ structural genomics, unknown function Chain: A: conserved hypothetical protein; crystal structure of a conserved hypothetical protein (sp_1560) from2 streptococcus pneumoniae tigr4 at 2.74 a resolution
c4uq1n_ ribosome Chain: N: 60s ribosomal protein l15; mammalian 80s hcv-ires initiation complex with eif5b post-like state
c4tpd2_ ribosome Chain: 2: 50s ribosomal protein l34; crystal structure of the e. coli ribosome bound to flopristin and2 linopristin. this file contains the 50s subunit of the first 70s3 ribosome with flopristin and linopristin bound.
c4tom2_ ribosome Chain: 2: 50s ribosomal protein l34; crystal structure of the e. coli ribosome bound to linopristin. this2 file contains the 50s subunit of the first 70s ribosome with3 linopristin bound.
c4peb2_ ribosome Chain: 2: 50s ribosomal protein l34; crystal structure of the e. coli ribosome bound to quinupristin. this2 file contains the 50s subunit of the first 70s ribosome with3 quinupristin bound.
c4lqqD_ transferase/transferase activator Chain: D: serine/threonine-protein kinase cbk1; crystal structure of the cbk1(t743e)-mob2 kinase-coactivator complex2 in crystal form b
c4tpsA_ replication Chain: A: sporulation inhibitor of replication protein sira; sporulation inhibitor of dna replication, sira, in complex with domain2 i of dnaa
c4tox2_ ribosome Chain: 2: 50s ribosomal protein l34; crystal structure of the e. coli ribosome bound to flopristin. this2 file contains the 50s subunit of the second 70s ribosome with3 flopristin bound.
c2mrlA_ unknown function Chain: A: uncharacterized protein bth i2711; backbone 1h, 13c, and 15n chemical shift assignments and nmr structure2 for potential drug target from burkholderia thailandensis e264
c4tp32_ ribosome Chain: 2: 50s ribosomal protein l34; crystal structure of the e. coli ribosome bound to dalfopristin. this2 file contains the 50s subunit of the second 70s ribosome with3 dalfopristin bound.
c4tp12_ ribosome Chain: 2: 50s ribosomal protein l34; crystal structure of the e. coli ribosome bound to dalfopristin. this2 file contains the 50s subunit of the first 70s ribosome with3 dalfopristin bound.
c4qdfB_ oxidoreductase/oxidoreductase inhibitor Chain: B: 3-ketosteroid 9alpha-hydroxylase oxygenase; crystal structure of apo ksha5 and ksha1 in complex with 1,4-30q-coa2 from r. rhodochrous
c4upxn_ ribosome Chain: N: 60s ribosomal protein l15; mammalian 80s hcv-ires initiation complex with eif5b pre-like state
c4qvsA_ unknown function Chain: A: s-layer domain-containing protein; 2.1 angstrom resolution crystal structure of s-layer domain-containing2 protein (residues 221-444) from clostridium thermocellum atcc 27405
c4tp72_ ribosome Chain: 2: 50s ribosomal protein l34; crystal structure of the e. coli ribosome bound to virginiamycin m1.2 this file contains the 50s subunit of the second 70s ribosome with3 virginiamycin m1 bound.


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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