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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Jul 26

Fold library idPDB HeaderMoleculeTitle
c4d10H_ signaling protein Chain: H: cop9 signalosome complex subunit 8; crystal structure of the cop9 signalosome
c4pugA_ dna binding protein Chain: A: bola like protein; bola1 from arabidopsis thaliana
c4qhwA_ structural genomics, unknown function Chain: A: uncharacterized protein; crystal structure of a hypothetical protein (baccac_02064) from2 bacteroides caccae atcc 43185 at 1.35 a resolution
c4oitB_ sugar binding protein Chain: B: lysm domain protein; structure, interactions and evolutionary implications of a domain-2 swapped lectin dimer from mycobacterium smegmatis
c4ob7A_ hydrolase Chain: A: alpha/beta hydrolase fold-3 domain protein; crystal structure of esterase rppe mutant w187h
c4d18G_ signaling protein Chain: G: cop9 signalosome complex subunit 7a; crystal structure of the cop9 signalosome
c4puiA_ protein binding Chain: A: sufe-like protein, chloroplastic; bola domain of sufe1 from arabidopsis thaliana
c4lqlF_ isomerase Chain: F: l-arabinose isomerase; crystal structure of l-arabinose isomerase from lactobacillus2 fermentum cgmcc2921
c4qb5A_ oxidoreductase Chain: A: glyoxalase/bleomycin resistance protein/dioxygenase; crystal structure of a glyoxalase/bleomycin resistance protein from2 albidiferax ferrireducens t118
c4pn7A_ transcription Chain: A: putative transcription factor; crystal structure of the tfiih p34 n-terminal domain
c4pivB_ transferase/transferase inhibitor Chain: B: fatty acid synthase; human fatty acid synthase psi/kr tri-domain with nadph and gsk2194069
c3j6rC_ virus Chain: C: major capsid protein l1; electron cryo-microscopy of human papillomavirus type 16 capsid
c4qanA_ structural genomics, unknown function Chain: A: hypothetical protein; crystal structure of a hypothetical protein (rumgna_02398) from2 ruminococcus gnavus atcc 29149 at 2.10 a resolution
c4tr3A_ oxidoreductase Chain: A: type iii iodothyronine deiodinase; mouse iodothyronine deiodinase 3 catalytic core, semet-labeled active2 site mutant secys->cys
c4cfoB_ hydrolase Chain: B: mltc; structure of lytic transglycosylase mltc from escherichia2 coli in complex with tetrasaccharide at 2.9 a resolution.
c4l8lA_ lyase Chain: A: 3-dehydroquinate dehydratase 1; crystal structure of the type ii dehydroquinase from pseudomonas2 aeruginosa
c4d18F_ signaling protein Chain: F: cop9 signalosome complex subunit 6; crystal structure of the cop9 signalosome
c2mn8A_ antimicrobial protein Chain: A: maculatin g15; nmr structure of a peptoid analogue of maculatin g15 containing cis-2 nleu at position 13
c2mmjA_ antimicrobial protein Chain: A: maculatin g15; structure of a peptoid analogue of maculatin g15 in dpc micelles
c4nx8A_ hydrolase Chain: A: protein-tyrosine phosphatase 2; structure of a ptp-like phytase from bdellovibrio bacteriovorus
c3wfjD_ oxidoreductase Chain: D: 2-dehydropantoate 2-reductase; the complex structure of d-mandelate dehydrogenase with nadh
c4pxhF_ oxidoreductase/protein binding Chain: F: peptide synthetase; structure of p450sky (cyp163b3), a cytochrome p450 from skyllamycin2 biosynthesis in complex with a peptidyl carrier protein domain
c3wibB_ hydrolase Chain: B: haloalkane dehalogenase; crystal structure of y109w mutant haloalkane dehalogenase data from2 agrobacterium tumefaciens c58
c4nphA_ protein transport Chain: A: probable secretion system apparatus atp synthase ssan; crystal structure of ssan from salmonella enterica
c4cvqB_ transferase Chain: B: glutamate-pyruvate aminotransferase alaa; crystal structure of an aminotransferase from escherichia2 coli at 2.11 angstroem resolution
c4n3xD_ endocytosis Chain: D: rab5 gdp/gtp exchange factor; crystal structure of rabex-5 cc domain
c4q2tB_ ligase Chain: B: arginine--trna ligase, cytoplasmic; crystal structure of arginyl-trna synthetase complexed with l-arginine
c4lqrA_ sugar binding protein Chain: A: glycosyl hydrolase, family 31/fibronectin type iii domain structure of cbm32-3 from a family 31 glycoside hydrolase from2 clostridium perfringens
c4d10C_ signaling protein Chain: C: cop9 signalosome complex subunit 3; crystal structure of the cop9 signalosome
c4d18E_ signaling protein Chain: E: cop9 signalosome complex subunit 5; crystal structure of the cop9 signalosome
c4nu0B_ transferase Chain: B: adenylate kinase; crystal structure of adenylate kinase from streptococcus pneumoniae2 with ap5a
c2mm9A_ transcription Chain: A: bola2; solution structure of reduced bola2 from arabidopsis thaliana
c4d0pA_ signaling protein Chain: A: cop9 signalosome complex subunit 4; crystal structure of human csn4
c4d18I_ signaling protein Chain: I: cop9 signalosome complex subunit 1; crystal structure of the cop9 signalosome
c4qrjA_ hydrolase Chain: A: putative 6-phosphogluconolactonase; crystal structure of a putative 6-phosphogluconolactonase2 (bacuni_04672) from bacteroides uniformis atcc 8492 at 2.20 a3 resolution
c4pfxA_ transferase Chain: A: putative glycosyltransferase (galt1); the highly conserved domain of unknown function 1792 has a distinct2 glycosyltransferase fold
c4pshA_ protein transport Chain: A: abc-type transporter, periplasmic subunit family 3; structure of holo argbp from t. maritima
c4mh1A_ oxidoreductase Chain: A: sorbose dehydrogenase; crystal structure and functional studies of quinoprotein l-sorbose2 dehydrogenase from ketogulonicigenium vulgare y25
c4tmaH_ isomerase/isomerase inhibitor Chain: H: dna gyrase subunit b; crystal structure of gyrase bound to its inhibitor yacg
c3wflA_ hydrolase Chain: A: beta-mannanase; crtstal structure of glycoside hydrolase family 5 beta-mannanase from2 talaromyces trachyspermus
c2mauA_ hydrolase inhibitor Chain: A: wrightide r1; solution structure of alpha-amylase inhibitor wrightide r1 (wr1)2 peptide from wrightia religiosa
c4q9uE_ endocytosis Chain: E: rab5 gdp/gtp exchange factor; crystal structure of the rab5, rabex-5delta and rabaptin-5c21 complex
c4pxeB_ hydrolase Chain: B: ureidoglycolate hydrolase; the crystal structure of atuah in complex with glyoxylate
c4um2A_ telomerase-binding protein Chain: A: telomerase-binding protein est1a; crystal structure of the tpr domain of smg6
c2mi5A_ toxin Chain: A: mu-diguetoxin-dc1a; structure of insect-specific sodium channel toxin mu-dc1a
c4crnX_ translation Chain: X: erf1 in ribosome-bound erf1-erf3-gdpnp complex; cryo-em of a pretermination complex with erf1 and erf3
c2mkjA_ translation regulator Chain: A: cytoplasmic polyadenylation element-binding protein 4; solution structure of tandem rrm domains of cytoplasmic2 polyadenylation element binding protein 4 (cpeb4) in free state
c4d18L_ signaling protein Chain: L: cop9 signalosome complex subunit 4; crystal structure of the cop9 signalosome
c2mkkA_ translation regulator/rna Chain: A: cytoplasmic polyadenylation element-binding protein 1; structural model of tandem rrm domains of cytoplasmic polyadenylation2 element binding protein 1 (cpeb1) in complex with rna
c4d18J_ signaling protein Chain: J: cop9 signalosome complex subunit 2; crystal structure of the cop9 signalosome
c2m5eB_ calcium-binding protein/metal transport Chain: B: sodium channel protein type 2 subunit alpha; structure of the c-domain of calcium-saturated calmodulin bound to the2 iq motif of nav1.2
c4mfiA_ sugar binding protein Chain: A: sn-glycerol-3-phosphate abc transporter substrate-binding crystal structure of mycobacterium tuberculosis ugpb
c4lizA_ structural protein Chain: A: actin-binding protein, cofilin/tropomyosin family protein, crystal structure of coactosin from entamoeba histolytica
c4tymA_ transferase Chain: A: purine nucleoside phosphorylase deod-type; crystal structure of purine nucleoside phosphorylase from2 streptococcus agalactiae 2603v/r, nysgrc target 030935
c4qrkA_ cell adhesion Chain: A: hypothetical protein; crystal structure of a hypothetical protein (clospo_03726) from2 clostridium sporogenes atcc 15579 at 1.95 a resolution
c2mn9A_ antimicrobial protein Chain: A: maculatin g15; peptoid analogue of maculatin g15 - peptoid trans-nleu at position 13
c4crnP_ translation Chain: P: erf3 in ribosome bound erf1-erf3-gdpnp complex; cryo-em of a pretermination complex with erf1 and erf3


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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