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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Jul 05

Fold library idPDB HeaderMoleculeTitle
c2mdfA_ proton transport Chain: A: sodium/hydrogen exchanger 1; nmr structure of a two-transmembrane segment tm vi-vii of nhe1
c4plcA_ oxidoreductase Chain: A: lactate dehydrogenase; crystal structure of ancestral apicomplexan lactate dehydrogenase with2 malate.
c4q7aD_ hydrolase Chain: D: n-acetyl-ornithine/n-acetyl-lysine deacetylase; crystal structure of n-acetyl-ornithine/n-acetyl-lysine deacetylase2 from sphaerobacter thermophilus
c4c65A_ hydrolase Chain: A: ochratoxinase; crystal structure of a. niger ochratoxinase
c4n7zB_ cell cycle Chain: B: centrosomal protein of 192 kda; crystal structure of human plk4 cryptic polo box (cpb) in complex with2 a cep192 n-terminal fragment
c4lf6U_ ribosome Chain: U: ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c4n02A_ isomerase Chain: A: isopentenyl-diphosphate delta-isomerase; type 2 idi from s. pneumoniae
c4pkcA_ lyase Chain: A: tutd; benzylsuccinate alpha-gamma complex
c4qjiB_ ligase Chain: B: phosphopantothenoylcysteine crystal structure of the c-terminal ctp-binding domain of a2 phosphopantothenoylcysteine decarboxylase/phosphopantothenate-3 cysteine ligase with bound ctp from mycobacterium smegmatis
c4cpcG_ cell cycle Chain: G: synaptonemal complex protein 3; crystal structure of human synaptonemal complex protein sycp3
c4qecB_ oxidoreductase Chain: B: elxo; elxo with nadp bound
c4qf3A_ transcription Chain: A: bromodomain adjacent to zinc finger domain protein 2b; crystal structure of human baz2b phd zinc finger in the free form
c4oo1J_ hydrolase/rna Chain: J: exosome complex exonuclease rrp6; structure of the exosome component in complex with rna.
c4n7vB_ cell cycle Chain: B: serine/threonine-protein kinase plk4; crystal structure of human plk4 cryptic polo box (cpb) in complex with2 a cep152 n-terminal fragment
c4q2eA_ transferase Chain: A: phosphatidate cytidylyltransferase; crystal structure of an intramembrane cdp-dag synthetase central for2 phospholipid biosynthesis (s200c/s258c, active mutant)
c2marA_ unknown function Chain: A: sxp/ral-2 family protein; solution structure of ani s 5 anisakis simplex allergen
c2mmtA_ antibiotic Chain: A: microcin j25 rgdf mutant; lasso peptide-based integrin inhibitor: microcin j25 variant with rgdf2 substitution of gly12-ile13-gly14-thr15
c4pibC_ unknown function Chain: C: inclusion body protein; crystal structure of uncharacterized conserved protein pixa from2 burkholderia thailandensis
c4pfqF_ transferase Chain: F: hypoxanthine phosphoribosyltransferase; crystal structure of hypoxanthine phosphoribosyltransferase from2 brachybacterium faecium dsm 4810, nysgrc target 029763.
c4opxD_ transferase/dna/transferase inhibitor Chain: D: poly [adp-ribose] polymerase 1; structure of human parp-1 bound to a dna double strand break in2 complex with (2r)-5-fluoro-2-methyl-2,3-dihydro-1-benzofuran-7-3 carboxamide
c4qjbB_ hydrolase Chain: B: haloacid dehalogenase-like hydrolase; crystal structure of the sugar phosphatase pfhad1 from plasmodium2 falciparum
c3wa1A_ toxin Chain: A: binb protein; crystal structure of protein
c4myiA_ transferase Chain: A: cgmp-dependent protein kinase, putative; crystal structure of pvx_084705
c4c4aA_ transferase Chain: A: protein arginine n-methyltransferase 7; crystal structure of mouse methyltransferase with sulfobetaine
c4lf4U_ ribosome Chain: U: ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c4lfbU_ ribosome Chain: U: ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c4ozlA_ signaling protein Chain: A: nitrogen regulatory protein p-ii; glnk2 from haloferax mediterranei complexed with amp
c4mqvB_ protein binding Chain: B: swi/snf-related matrix-associated actin-dependent regulator crystal complex of rpa32c and smarcal1 n-terminus
c4q2gA_ transferase Chain: A: phosphatidate cytidylyltransferase; crystal structure of an intramembrane cdp-dag synthetase central for2 phospholipid biosynthesis (s200c/s223c, inactive mutant)
c4q9bA_ immune system Chain: A: novel antigen receptor; ignar antibody domain c2
c4lrqC_ hydrolase Chain: C: phosphotyrosine protein phosphatase; crystal structure of a low molecular weight phosphotyrosine2 phosphatase from vibrio choleraeo395
c4lf8U_ ribosome Chain: U: ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c4pkcC_ lyase Chain: C: tutf; benzylsuccinate alpha-gamma complex
c4orkB_ transferase Chain: B: bifunctional aac/aph; crystal structure of the phosphotransferase domain of the bifunctional2 aminoglycoside resistance enzyme aac(6')-ie-aph(2'')-ia
c4tlgB_ transport protein Chain: B: sec14-like protein 4; crystal structure of sec14-like protein 4 (sec14l4)
c3wp9A_ antifreeze protein Chain: A: ice-binding protein; crystal structure of antifreeze protein from an antarctic sea ice2 bacterium colwellia sp.
c4pkfB_ lyase Chain: B: tutg; benzylsuccinate synthase alpha-beta-gamma complex
c4q97B_ immune system Chain: B: novel antigen receptor; ignar antibody domain c1
c4cngB_ transferase Chain: B: spou rrna methylase; crystal structure of sulfolobus acidocaldarius trmj in2 complex with s-adenosyl-l-homocysteine
c4cndB_ transferase Chain: B: trna (cytidine/uridine-2'-o-)-methyltransferase trmj; crystal structure of e.coli trmj
c4tmdA_ unknown function Chain: A: uncharacterized protein; x-ray structure of putative uncharacterized protein (rv0999 ortholog)2 from mycobacterium smegmatis
c2md0A_ immune system Chain: A: ack1; solution structure of shk-like immunomodulatory peptide from2 ancylostoma caninum (hookworm)
c4ql5A_ translation Chain: A: translation initiation factor if-1; crystal structure of translation initiation factor if-1 from2 streptococcus pneumoniae tigr4
c4kqdA_ signaling protein Chain: A: protein traj; the crystal structure of the n-terminal pas domain of the f plasmid2 traj
c4lf5U_ ribosome Chain: U: ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c4magA_ transport protein Chain: A: sialic acid binding protein; crystal structure of the periplasmic sialic acid binding protein from2 vibrio cholerea
c4pkfC_ lyase Chain: C: tutf; benzylsuccinate synthase alpha-beta-gamma complex
c4lf9U_ ribosome Chain: U: ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c3we9A_ transferase Chain: A: putative phytoene/squalene synthase yisp; the crystal structure of yisp from bacillus subtilis subsp. subtilis2 strain 168
c4oiyA_ protein transport Chain: A: protein transport protein sec7; crystal structure of sec7p catalytic domain
c3whoC_ hydrolase Chain: C: guanyl-specific ribonuclease po1; x-ray-crystallographic structure of an rnase po1 exhibiting anti-tumor2 activity
c4p7nA_ hydrolase Chain: A: poly-beta-1,6-n-acetyl-d-glucosamine n-deacetylase; structure of escherichia coli pgab c-terminal domain in complex with2 glucosamine
c2mklC_ immune system Chain: C: novel antigen receptor; solution structure of the fourth constant immunoglobulin domain of2 nurse shark ignar
c4tlmC_ signaling protein Chain: C: receptor subunit glun1; crystal structure of glun1/glun2b nmda receptor, structure 2
c2moqA_ protein binding Chain: A: iron-regulated surface determinant protein b; solution structure and molecular determinants of hemoglobin binding of2 the first neat domain of isdb in staphylococcus aureus
c4mqvD_ protein binding Chain: D: swi/snf-related matrix-associated actin-dependent regulator crystal complex of rpa32c and smarcal1 n-terminus
c4otpA_ transferase Chain: A: serine/threonine-protein kinase rio1; crystal structure of the catalytic domain of the human riok1 atypical2 protein kinase in complex with adp/mg2+
c4n7vC_ cell cycle Chain: C: centrosomal protein of 152 kda; crystal structure of human plk4 cryptic polo box (cpb) in complex with2 a cep152 n-terminal fragment
c4on9B_ hydrolase Chain: B: probable atp-dependent rna helicase ddx58; dech box helicase domain
c4lfcU_ ribosome Chain: U: ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c4q9cA_ immune system Chain: A: novel antigen receptor; ignar antibody domain c3
c4qb7A_ cell adhesion Chain: A: uncharacterized protein; crystal structure of a hypothetical protein (bvu_2522) from2 bacteroides vulgatus atcc 8482 at 2.55 a resolution (psi community3 target, nakayama)
c4mndA_ transferase Chain: A: ctp l-myo-inositol-1-phosphate cytidylyltransferase/cdp-l- crystal structure of archaeoglobus fulgidus ipct-dipps bifunctional2 membrane protein
c2mp2C_ protein binding Chain: C: e3 ubiquitin-protein ligase rnf4; solution structure of sumo dimer in complex with sim2-3 from rnf4
c4lf7U_ ribosome Chain: U: ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c4oo9A_ membrane protein Chain: A: metabotropic glutamate receptor 5, lysozyme chimera; structure of the human class c gpcr metabotropic glutamate receptor 52 transmembrane domain in complex with the negative allosteric3 modulator mavoglurant
c2mcrA_ immune system Chain: A: probable zinc metalloproteinase, putative; solution structure of shk-like immunomodulatory peptide from brugia2 malayi (filarial worm)
c4lfaU_ ribosome Chain: U: ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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