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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Jun 14

Fold library idPDB HeaderMoleculeTitle
c4p3bB_ immune system Chain: B: complement c5; crystal structure of the mouse c5a-desarg anaphylatoxin
c4okmA_ transferase Chain: A: terpene synthase metal-binding domain-containing protein; selinadiene synthase apo and in complex with diphosphate
c4cyjF_ transferase Chain: F: pan2; chaetomium thermophilum pan2:pan3 complex
c4qeaG_ hydrolase Chain: G: 5'-nucleotidase sure; crystal structure of stationary phase survival protein (sure) from2 brucella abortus
c4pz9B_ hydrolase Chain: B: glucosyl-3-phosphoglycerate phosphatase; the native structure of mycobacterial glucosyl-3-phosphoglycerate2 phosphatase rv2419c
c4czdA_ lyase Chain: A: putative transcriptional regulator, asnc family; sirohaem decarboxylase ahba/b - an enzyme with structural homology2 to the lrp/asnc transcription factor family that is part of the3 alternative haem biosynthesis pathway.
c4czeA_ structural protein Chain: A: rod shape-determining protein mreb; c. crescentus mreb, double filament, empty
c4cyiH_ transferase Chain: H: pab-dependent poly(a)-specific ribonuclease subunit pan3- chaetomium thermophilum pan3
c4l5cE_ transferase Chain: E: s-methyl-5'-thioadenosine phosphorylase; methylthioadenosine phosphorylase from schistosoma mansoni in complex2 with adenine in space group p212121
c4o6hA_ hydrolase Chain: A: nucleoprotein; 2.8a crystal structure of lymphocytic choriomeningitis virus2 nucleoprotein c-terminal domain
c2mpgA_ hormone Chain: A: insulin a chain; solution structure of the [aibb8,lysb28,prob29]-insulin analogue
c4o9pC_ membrane protein Chain: C: nad(p) transhydrogenase subunit alpha 2; crystal structure of thermus thermophilis transhydrogeanse domain ii2 dimer semet derivative
c4q2uM_ toxin/toxin repressor Chain: M: antitoxin dinj; crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
c4lhqB_ hydrolase/immune system Chain: B: camelid nanobody; ricin a chain bound to camelid nanobody (vhh8)
c1vw8o_ ribosome Chain: O: 60s ribosomal protein l15; s. cerevisiae 80s ribosome bound with taura syndrome virus (tsv) ires,2 5 degree rotation (class ii). this entry contains the large subunit3 ribosomal proteins.
c4qbdC_ motor protein Chain: C: myosin heavy chain, muscle; the first x-ray crystal structure of an insect muscle myosin.2 drosophila melanogaster, skeletal muscle myosin ii, an embryonic3 isoform, subfragment-1
c4qdhA_ immune system Chain: A: variable lymphocyte receptor b, toll-like receptor 9 crystal structure of the c-terminal domain of mouse tlr9
c4o6zC_ transferase Chain: C: serine hydroxymethyltransferase; crystal structure of serine hydroxymethyltransferase with covalently2 bound plp schiff-base from plasmodium falciparum
c4tl2A_ transferase Chain: A: at-less polyketide synthase; crystal structure of ketosynthase domain from mgsf from streptomyces2 platensis
c4pbzB_ cell cycle Chain: B: metastasis-associated protein mta1; structure of the human rbap48-mta1(670-695) complex
c4q2uH_ toxin/toxin repressor Chain: H: mrna interferase yafq; crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
c4cyzC_ viral protein Chain: C: hemagglutinin; structure of the a_mallard_sweden_51_2002 h10 avian2 haemmaglutinin in complex with avian receptor analog lsta
c4pm4B_ solute-binding protein Chain: B: iron complex transporter substrate-binding protein; structure of a putative periplasmic iron siderophore binding protein2 (rv0265c) from mycobacterium tuberculosis h37rv
c4pqlB_ dna binding protein Chain: B: truncated replication protein repa; n-terminal domain of dna binding protein
c2mmpA_ ribosomal protein Chain: A: uncharacterized protein; solution structure of a ribosomal protein
c4qbdD_ motor protein Chain: D: myosin light chain alkali; the first x-ray crystal structure of an insect muscle myosin.2 drosophila melanogaster, skeletal muscle myosin ii, an embryonic3 isoform, subfragment-1
c4pf1D_ hydrolase Chain: D: peptidase s15/coce/nond; crystal structure of aminopeptidase from marine sediment archaeon2 thaumarchaeota archaeon
c4czdD_ lyase Chain: D: putative transcriptional regulator, asnc family; sirohaem decarboxylase ahba/b - an enzyme with structural homology2 to the lrp/asnc transcription factor family that is part of the3 alternative haem biosynthesis pathway.
c4pc0D_ cell cycle Chain: D: metastasis-associated protein mta1; structure of the human rbap48-mta1(670-711) complex
c4lwlA_ oxidoreductase Chain: A: peptide methionine sulfoxide reductase msra; crystal structure of methionine sulfoxide reductase u16c/e55a from2 clostridium oremlandii
c4ox3A_ hydrolase Chain: A: putative carboxypeptidase yodj; structure of the ldcb ld-carboxypeptidase reveals the molecular basis2 of peptidoglycan recognition
c4pc0C_ cell cycle Chain: C: metastasis-associated protein mta1; structure of the human rbap48-mta1(670-711) complex
c4tktA_ transferase Chain: A: at-less polyketide synthase; crystal structure of ketosynthase domain from mgsf protein from2 streptomyces platensis
c4l3mA_ hydrolase Chain: A: endo-beta-mannanase; structure of the endo-1,4-beta-mannanase from thermophilic fungus2 rhizomucor miehei
c4o9tH_ membrane protein Chain: H: nad(p) transhydrogenase subunit beta; mechanism of transhydrogenase coupling proton translocation and2 hydride transfer
c4bphA_ ligase Chain: A: d-alanine--poly(phosphoribitol) ligase subunit 2; high resolution crystal structure of bacillus subtilis dltc
c4qdgB_ cell adhesion Chain: B: putative adhesin; crystal structure of a putative adhesin (bt2657) from bacteroides2 thetaiotaomicron vpi-5482 at 2.20 a resolution (psi community target,3 nakayama)
c4mzdA_ hydrolase Chain: A: nisin leader peptide-processing serine protease nisp; crystal structure of a subtilisin-like serine protease
c4pmjA_ oxidoreductase Chain: A: putative oxidoreductase; crystal structure of a putative oxidoreductase from sinorhizobium2 meliloti 1021 in complex with nadp
c4lgpD_ hydrolase/immune system Chain: D: vhh1 camelid nanobody; ricin a chain bound to camelid nanobody (vhh1)
c4l4wB_ protein transport Chain: B: espg3; structure of espg3 chaperone from the type vii (esx-3) secretion2 system
c1vwuo_ ribosome Chain: O: 60s ribosomal protein l15; s. cerevisiae 80s ribosome bound with taura syndrome virus (tsv) ires,2 2 degree rotation (class i). this entry contains the large subunit3 ribosomal proteins.


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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