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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Jun 07

Fold library idPDB HeaderMoleculeTitle
c4cymC_ transport protein Chain: C: ras-related protein rab-32; complex of human varp-ankrd1 with rab32-gppcp
c4d2qC_ chaperone Chain: C: clpb; negative-stain electron microscopy of e. coli clpb2 mutant e432a (bap form bound to clpp)
c4q8jE_ hydrolase Chain: E: pab-dependent poly(a)-specific ribonuclease subunit pan3; structure of the saccharomyces cerevisiae pan2-pan3 core complex
c3wctA_ oxygen transport Chain: A: a1 globin chain of giant v2 hemoglobin; the structure of a deoxygenated 400 kda hemoglobin provides a more2 accurate description of the cooperative mechanism of giant3 hemoglobins: oxygenated form
c4pgwA_ membrance protein Chain: A: uncharacterized protein yetj; crystal structure of yetj from bacillus subtilis at ph 6 by pt-sad
c4pguA_ membrance protein Chain: A: uncharacterized protein yetj; crystal structure of yetj from bacillus subtilis at ph 7 by soaking
c4d0kA_ gene regulation Chain: A: a-specific ribonuclease subunit pan2; complex of chaetomium thermophilum pan2 (wd40-cs1) with pan3 (c-term)
c4cofC_ transport protein Chain: C: gamma-aminobutyric acid receptor subunit beta-3; crystal structure of a human gamma-aminobutyric acid receptor, the2 gaba(a)r-beta3 homopentamer
c4q05A_ hydrolase Chain: A: esterase e25; crystal structure of an esterase e25
c4n58A_ hydrolase Chain: A: pectocin m2; crystal structure of pectocin m2 at 1.86 angstroms
c4d2mB_ apoptosis Chain: B: bcl-2-like protein 11; vaccinia virus f1l bound to bim bh3
c4pe5A_ transport protein Chain: A: glutamate receptor ionotropic, nmda 1; crystal structure of glun1a/glun2b nmda receptor ion channel
c4kvbU_ ribosome Chain: U: 30s ribosomal protein thx; thermus thermophilus hb27 30s ribosomal subunit lacking ribosomal2 protein s17
c3wctD_ oxygen transport Chain: D: b1 globin chain of giant v2 hemoglobin; the structure of a deoxygenated 400 kda hemoglobin provides a more2 accurate description of the cooperative mechanism of giant3 hemoglobins: oxygenated form
c4l0cA_ hydrolase Chain: A: deformylase; crytal structure of the n-fopmylmaleamic acid deformylase nfo(s94a)2 from pseudomonas putida s16
c4lusD_ isomerase Chain: D: alanine racemase; alanine racemase [clostridium difficile 630]
c4meeA_ protein binding Chain: A: diffuse adherence adhesin; crystal structure of the transport unit of the autotransporter aida-i2 from escherichia coli
c4omhA_ lyase Chain: A: geranylgeranyl diphosphate cyclase; crystal structure of a diterpene cyclase
c4q8jA_ hydrolase Chain: A: pab-dependent poly(a)-specific ribonuclease subunit pan2; structure of the saccharomyces cerevisiae pan2-pan3 core complex
c4ikgA_ apoptosis Chain: A: cell death activator cide-3; crystal structure of cell death-inducing dffa-like effector c
c4pziA_ transcription/dna Chain: A: histone-lysine n-methyltransferase 2b; zinc finger region of mll2 in complex with cpg dna
c4onqA_ transferase/transferase inhibitor Chain: A: dna methyltransferase; crystal structure of ntdrm e283s/r309s/f310s/y590s/d591s mutant
c4q9tB_ protein transport Chain: B: nucleoporin nup133; crystal structure of vanderwaltozyma polyspora nup133 beta-propeller2 domain
c4oddB_ allergen Chain: B: lipocalin allergen; crystal structure of a dog lipocalin allergen
c4l1gB_ hydrolase Chain: B: peptidoglycan n-acetylglucosamine deacetylase; crystal structure of the bc1960 peptidoglycan n-acetylglucosamine2 deacetylase from bacillus cereus
c4czvB_ gene regulation Chain: B: pab-dependent poly(a)-specific ribonuclease subunit pan2; structure of the neurospora crassa pan2 wd40 domain
c4oqqA_ transcription Chain: A: deoxyribonucleoside regulator; structure of the effector-binding domain of deoxyribonucleoside2 regulator deor from bacillus subtilis
c4cz2D_ signaling protein Chain: D: ankyrin repeat domain-containing protein 27; complex of human varp-ankrd1 with rab32-gppcp. selenomet derivative.
c3wadA_ transferase Chain: A: glycosyltransferase; crystal structure of glycosyltransferase vinc involved in the2 biosynthesis of vicenistatin
c4d0kC_ gene regulation Chain: C: pab-dependent poly(a)-specific ribonuclease subunit complex of chaetomium thermophilum pan2 (wd40-cs1) with pan3 (c-term)
c4q96C_ protein binding Chain: C: rpb1-ctd; cid of human rprd1b in complex with an unmodified ctd peptide
c4czwA_ gene regulation Chain: A: pab-dependent poly(a)-specific ribonuclease subunit pan2; structure of the neurospora crassa pan2 catalytic unit (protease and2 nuclease domain)
c4ct0B_ circadian clock protein Chain: B: period circadian protein homolog 2; crystal structure of mouse cryptochrome1 in complex with period2
c4q96F_ protein binding Chain: F: rpb1-ctd; cid of human rprd1b in complex with an unmodified ctd peptide
c4pe5B_ transport protein Chain: B: glutamate receptor ionotropic, nmda 2b; crystal structure of glun1a/glun2b nmda receptor ion channel
c4csu6_ ribosome Chain: 6: 50s ribosomal protein l34; cryo-em structures of the 50s ribosome subunit bound with obge
c4lmaA_ transferase Chain: A: cysteine synthase; crystal structure analysis of o-acetylserine sulfhydrylase cysk1 from2 microcystis aeruginosa 7806
c4kzsA_ unknown function Chain: A: lpp20 lipofamily protein; crystal structure of the secreted protein hp1454 from the human2 pathogen helicobacter pylori
c4olsA_ hydrolase Chain: A: endolysin; the amidase-2 domain of lysgh15
c2mf4A_ transferase Chain: A: hybrid polyketide synthase-non ribosomal peptide 1h, 13c, 15n chemical shift assignments of streptomyces virginiae vira2 acp5a
c3wj7B_ oxidoreductase Chain: B: putative oxidoreductase; crystal structure of gox2253
c4d2mD_ apoptosis Chain: D: bcl-2-like protein 11; vaccinia virus f1l bound to bim bh3
c4csu9_ ribosome Chain: 9: gtpase obge/cgta; cryo-em structures of the 50s ribosome subunit bound with obge
c4qavB_ transferase Chain: B: 3-oxoacyl-[acyl-carrier-protein] synthase 2; the structure of beta-ketoacyl -(acyl carrier protein) synthase ii2 (fabf) from neisseria meningitidis
c4ca3A_ ribosomal protein Chain: A: hybrid polyketide synthase-non ribosomal peptide solution structure of streptomyces virginiae vira acp5b
c4omuA_ oxidoreductase Chain: A: shikimate dehydrogenase; crystal structure of shikimate dehydrogenase (aroe) from pseudomonas2 putida
c4pucB_ sugar binding protein Chain: B: susd homolog; crystal structure of a susd homolog (bacuni_02643) from bacteroides2 uniformis atcc 8492 at 2.00 a resolution
c4q98A_ cell adhesion Chain: A: major fimbrial subunit protein; crystal structure of a fimbrilin (fima) from porphyromonas gingivalis2 w83 at 1.30 a resolution (psi community target, nakayama)
c3wcxA_ hydrolase Chain: A: sphingomyelinase c; crystal structure of sphingomyelinase c from streptomyces2 griseocarneus
c4bxiA_ atp-binding protein Chain: A: accessory gene regulator protein c; crystal structure of atp binding domain of agrc from2 staphylococcus aureus


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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