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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 May 24

Fold library idPDB HeaderMoleculeTitle
c4i25B_ oxidoreductase Chain: B: 2-aminomuconate 6-semialdehyde dehydrogenase; 2.00 angstroms x-ray crystal structure of nad- and substrate-bound 2-2 aminomuconate 6-semialdehyde dehydrogenase from pseudomonas3 fluorescens
c4n4qD_ lyase Chain: D: acylneuraminate lyase; crystal structure of n-acetylneuraminate lyase from mycoplasma2 synoviae, crystal form ii
c4cwln_ virus Chain: N: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlW_ virus Chain: W: the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlj_ virus Chain: J: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4o03A_ hydrolase Chain: A: prothrombin; crystal structure of ca2+ bound prothrombin deletion mutant residues2 146-167
c4cwlP_ virus Chain: P: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4mzpC_ hydrolase Chain: C: mazf mrna interferase; mazf from s. aureus crystal form iii, c2221, 2.7 a
c4bmlA_ virus Chain: A: major capsid protein; c-alpha backbone trace of major capsid protein gp39 found2 in marine virus syn5.
c4ktrE_ transferase Chain: E: glycoside hydrolase family 65 central catalytic; crystal structure of 2-o-alpha-glucosylglycerol phosphorylase in2 complex with isofagomine and glycerol
c4cwl1_ virus Chain: 1: PDB Fragment:residues 1-80
c4p7hB_ motor/fluorescent protein Chain: B: myosin-7,green fluorescent protein; structure of human beta-cardiac myosin motor domain::gfp chimera
c4pevB_ solute-binding protein Chain: B: membrane lipoprotein family protein; crystal structure of abc transporter system solute-binding proteins2 from aeropyrum pernix k1
c4cwla_ virus Chain: A: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4q88B_ structural genomics, unknown function Chain: B: uncharacterized protein; glycosyl hydrolase family 88 from bacteroides vulgatus
c4ku0D_ hydrolase/protein binding Chain: D: uncharacterized 10.2 kda protein in segc-gp6 intergenic enterobacteria phage t4 gp5.4 paar repeat protein in complex with t42 gp5 beta-helix fragment
c4cwlR_ virus Chain: R: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4kr3A_ ligase/rna Chain: A: glycine--trna ligase; glycyl-trna synthetase mutant e71g in complex with trna-gly
c4merD_ unknown function Chain: D: streptococcal histidine-rich glycoprotein interacting crystal structure of the novel protein and virulence factor ship2 (q99xu0) from streptococcus pyogenes
c4q6rB_ lyase/lyase inhibitor Chain: B: sphingosine-1-phosphate lyase 1; crystal structure of human sphingosine-1-phosphate lyase in complex2 with inhibitor 6-[(2r)-4-(4-benzyl-7-chlorophthalazin-1-yl)-2-3 methylpiperazin-1-yl]pyridine-3-carbonitrile
c4cwll_ virus Chain: L: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlh_ virus Chain: H: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cykA_ transcription Chain: A: pab-dependent poly(a)-specific ribonuclease subunit pan3; structural basis for binding of pan3 to pan2 and its2 function in mrna recruitment and deadenylation
c4q6fB_ transcription Chain: B: bromodomain adjacent to zinc finger domain protein 2a; crystal structure of human baz2a phd zinc finger in complex with2 unmodified h3k4 histone peptide
c4bxlC_ fibril Chain: C: alpha synuclein; structure of alpha-synuclein in complex with an engineered2 binding protein
c4cwlY_ virus Chain: Y: the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwls_ virus Chain: S: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlc_ virus Chain: C: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwl4_ virus Chain: 4: the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4pfsA_ ligase Chain: A: cobyrinic acid a,c-diamide synthase; crystal structure of cobyrinic acid a,c-diamide synthase from2 mycobacterium smegmatis
c4p9mH_ immune system Chain: H: 8anc195 fab heavy chain; crystal structure of 8anc195 fab
c4cwlE_ virus Chain: E: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4kbxA_ unknown function Chain: A: uncharacterized protein yhfx; crystal structure of the pyridoxal-5'-phosphate dependent protein yhfx2 from escherichia coli
c4jyrG_ hydrolase Chain: G: d,d-heptose 1,7-bisphosphate phosphatase; crystal structure of d,d-heptose 1,7-bisphosphate phosphatase from2 burkholderia thailandensis
c4cwlC_ virus Chain: C: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c2m8vA_ antibiotic Chain: A: bova; solution structure and activity study of bovicin hj50, a particular2 type aii lantibiotic
c4p2oP_ immune system Chain: P: 2a peptide; crystal structure of the 2b4 tcr in complex with 2a/i-ek
c4cwlJ_ virus Chain: J: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlZ_ virus Chain: Z: the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwld_ virus Chain: D: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlr_ virus Chain: R: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlw_ virus Chain: W: the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlQ_ virus Chain: Q: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwle_ virus Chain: E: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4ox5A_ hydrolase Chain: A: ldcb ld-carboxypeptidase; structure of the ldcb ld-carboxypeptidase reveals the molecular basis2 of peptidoglycan recognition
c4cwlp_ virus Chain: P: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlH_ virus Chain: H: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlL_ virus Chain: L: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4pytA_ oxidoreductase Chain: A: udp-n-acetylenolpyruvoylglucosamine reductase; crystal structure of a murb family ep-udp-n-acetylglucosamine2 reductase
c4cwlu_ virus Chain: U: the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4d0oA_ cell cycle Chain: A: a-kinase anchor protein 13; akap13 (akap-lbc) dh domain
c4q14B_ hydrolase Chain: B: 5-hydroxyisourate hydrolase; crystal structure of 5-hydroxyisourate hydrolase from brucella2 melitensis
c4cwlN_ virus Chain: N: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlU_ virus Chain: U: the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4q5wB_ transcription Chain: B: maternal protein tudor; crystal structure of extended-tudor 9 of drosophila melanogaster
c4cwl8_ virus Chain: 8: PDB Fragment:residues 1-80
c4cwlS_ virus Chain: S: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwl5_ virus Chain: 5: the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4nqjB_ ligase Chain: B: e3 ubiquitin-protein ligase trim69; structure of coiled-coil domain
c4cwlF_ virus Chain: F: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwl0_ virus Chain: 0: PDB Fragment:residues 1-80
c4cwli_ virus Chain: I: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlA_ virus Chain: A: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4nxnU_ ribosome/antibiotic Chain: U: ribosomal protein thx; crystal structure of the 30s ribosomal subunit from a gidb (rsmg)2 mutant of thermus thermophilus (hb8), bound with streptomycin
c4cwlt_ virus Chain: T: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlV_ virus Chain: V: the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4m1pA_ transcription repressor Chain: A: copper-sensitive operon repressor (csor); crystal structure of the copper-sensing repressor csor with cu(i) from2 geobacillus thermodenitrificans ng80-2
c4cwlM_ virus Chain: M: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlm_ virus Chain: M: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlX_ virus Chain: X: the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwl2_ virus Chain: 2: the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlb_ virus Chain: B: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlD_ virus Chain: D: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlg_ virus Chain: G: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c2mouA_ transport protein Chain: A: star-related lipid transfer protein 6; solution structure of star-related lipid transfer domain protein 62 (stard6)
c4cwlk_ virus Chain: K: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4o6jA_ metal binding protein Chain: A: iron-dependent transcription repressor related protein; crystal sturucture of t. acidophilum ider
c4cwl9_ virus Chain: 9: the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwl3_ virus Chain: 3: the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlO_ virus Chain: O: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4np4A_ immune system Chain: A: toxin b; clostridium difficile toxin b crop domain in complex with fab domains2 of neutralizing antibody bezlotoxumab
c2mfiA_ ribosomal protein Chain: A: 30s ribosomal protein s1; domain 1 of e. coli ribosomal protein s1
c4cwl6_ virus Chain: 6: the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlf_ virus Chain: F: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlT_ virus Chain: T: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlG_ virus Chain: G: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4q5yA_ transcription Chain: A: maternal protein tudor; crystal structure of extended-tudor 10-11 of drosophila melanogaster
c4cwlK_ virus Chain: K: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlq_ virus Chain: Q: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlx_ virus Chain: X: the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c2mflA_ ribosomal protein Chain: A: 30s ribosomal protein s1; domain 2 of e. coli ribosomal protein s1
c4cgkA_ cell cycle Chain: A: secreted 45 kda protein; crystal structure of the essential protein pcsb from streptococcus2 pneumoniae
c4kqeA_ ligase Chain: A: glycine--trna ligase; complex structure reveals multiple conformations of glycyl-trna2 synthetase in glycylation
c4nxmU_ ribosome Chain: U: ribosomal protein thx; crystal structure of the 30s ribosomal subunit from a gidb (rsmg)2 mutant of thermus thermophilus (hb8)
c4cwlB_ virus Chain: B: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4pypA_ transport protein Chain: A: solute carrier family 2, facilitated glucose transporter crystal structure of the human glucose transporter glut1
c4d0nB_ cell cycle Chain: B: a-kinase anchor protein 13; akap13 (akap-lbc) rhogef domain in complex with rhoa
c4cwl7_ virus Chain: 7: the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlI_ virus Chain: I: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c4cwlo_ virus Chain: O: p1; the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle
c2miiA_ protein binding Chain: A: penicillin-binding protein activator lpob; nmr structure of e. coli lpob
c4cwlv_ virus Chain: V: the limits of structural plasticity in a picornavirus2 capsid revealed by a massively expanded equine rhinitis a3 virus particle


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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