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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 May 17

Fold library idPDB HeaderMoleculeTitle
c4o66A_ dna binding protein Chain: A: swi/snf-related matrix-associated actin-dependent regulator crystal structure of smarcal1 harp substrate recognition domain
c4mivB_ hydrolase Chain: B: n-sulphoglucosamine sulphohydrolase; crystal structure of sulfamidase, crystal form l
c4l8fA_ hydrolase Chain: A: gamma-glutamyl hydrolase; crystal structure of gamma-glutamyl hydrolase (c108a) complex with mtx
c4q61J_ cell cycle Chain: J: uncharacterized hit-like protein hp_0404; hit like protein from helicobacter pylori 26695
c3widC_ oxidoreductase Chain: C: glucose 1-dehydrogenase; structure of a glucose dehydrogenase t277f mutant in complex with nadp
c4q6zA_ protein binding Chain: A: penicillin-binding protein activator lpob; lpob c-terminal domain from escherichia coli
c4ciuA_ chaperone Chain: A: chaperone protein clpb; crystal structure of e. coli clpb
c4kb3B_ oxidoreductase Chain: B: peroxidoxin; crystal structure of the mitochondrial peroxiredoxin from leishmania2 braziliensis in the decameric form
c4q7oA_ immune system Chain: A: immunity protein; the crystal structure of an immunity protein nmb0503 from neisseria2 meningitidis mc58
c4q7qA_ structural genomics, unknown function Chain: A: lipolytic protein g-d-s-l family; the crystal structure of a possible lipase from chitinophaga pinensis2 dsm 2588
c4cuyf_ ribosome Chain: F: us7; kluyveromyces lactis 80s ribosome in complex with crpv-ires
c4ohvA_ rna binding protein Chain: A: protein clpf-1; structure of a rna-processing protein
c4pfbA_ transport protein Chain: A: c4-dicarboxylate-binding protein; crystal structure of a trap periplasmic solute binding protein from2 fusobacterium nucleatun (fn1258, target efi-510120) with bound sn-3 glycerol-3-phosphate
c4leeC_ cell adhesion Chain: C: agglutinin-like protein 3; structure of the als3 adhesin from candida albicans, residues 1-3132 (mature sequence), triple mutant in the binding cavity: k59m, a116v,3 y301f
c4cgvA_ chaperone Chain: A: rna polymerase ii-associated protein 3; first tpr of spaghetti (rpap3) bound to hsp90 peptide srmeevd
c4ockA_ transferase Chain: A: n-acetylhexosamine 1-phosphate kinase; n-acetylhexosamine 1-phosphate kinase in complex with glcnac and2 amppnp
c4pf6A_ transport protein Chain: A: c4-dicarboxylate-binding protein; crystal structure of a trap periplasmic solute binding protein from2 roseobacter denitrificans (rd1_0742, target efi-510239) with bound 3-3 deoxy-d-manno-oct-2-ulosonic acid (kdo)
c2m83A_ hydrolase Chain: A: protein phosphatase 1 regulatory subunit 3a; solution structure of the carbohydrate binding module of the muscle2 glycogen-targeting subunit of protein phosphatase-1
c4q55B_ hydrolase Chain: B: peptidyl-trna hydrolase; crystal structure of peptidyl-trna hydrolase from a gram-positive2 bacterium, streptococcus pyogenes at 2.19a resolution shows the3 closed structure of the substrate binding cleft
c4ogqF_ electron transport Chain: F: cytochrome b6-f complex subunit 7; internal lipid architecture of the hetero-oligomeric cytochrome b6f2 complex
c4pddA_ solute-binding protein Chain: A: trap dicarboxylate transporter, dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 polaromonas sp js666 (bpro_0088, target efi-510167) bound to d-3 erythronate
c4p42B_ lipid transport Chain: B: extended synaptotagmin-2; extended-synaptotagmin 2, smp - c2a - c2b domains
c4q82A_ hydrolase Chain: A: phospholipase/carboxylesterase; crystal structure of phospholipase/carboxylesterase from haliangium2 ochraceum
c4n6eA_ lyase/biosynthetic protein Chain: A: putative thiosugar synthase; crystal structure of amycolatopsis orientalis bexx/cyso complex
c4petA_ solute-binding protein Chain: A: extracellular solute-binding protein, family 7; crystal structure of a trap periplasmic solute binding protein from2 colwellia psychrerythraea (cps_0129, target efi-510097) with bound3 calcium and pyruvate
c4n7rB_ oxidoreductase/protein binding Chain: B: glutamyl-trna reductase 1, chloroplastic; crystal structure of arabidopsis glutamyl-trna reductase in complex2 with its binding protein
c4cgwA_ chaperone Chain: A: rna polymerase ii-associated protein 3; second tpr of spaghetti (rpap3) bound to hsp90 peptide srmeevd
c4c1oA_ hydrolase Chain: A: beta-xylosidase; geobacillus thermoglucosidasius gh family 52 xylosidase
c4n7rD_ oxidoreductase/protein binding Chain: D: genomic dna, chromosome 3, p1 clone: mxl8; crystal structure of arabidopsis glutamyl-trna reductase in complex2 with its binding protein
c2m88A_ rna binding protein Chain: A: protein nrd1; nmr structure of a two-domain rna-binding fragment of nrd1
c3j3iA_ virus Chain: A: capsid protein; penicillium chrysogenum virus (pcv) capsid structure
c2mhqA_ blood clotting Chain: A: von willebrand factor; solution structure of the major factor viii binding region on von2 willebrand factor
c4bv1D_ oxidoreductase Chain: D: neq011; superoxide reductase (neelaredoxin) from nanoarchaeum2 equitans
c4p6qA_ transcription Chain: A: msx2-interacting protein; the crystal structure of the split end protein sharp adds a new layer2 of complexity to proteins containing rna recognition motifs
c4cguB_ chaperone/peptide Chain: B: protein interacting with hsp90 1; full length tah1 bound to yeast pih1 and hsp90 peptide srmeevd
c4pfrB_ solute-binding protein Chain: B: trap dicarboxylate transporter, dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 rhodobacter sphaeroides (rsph17029_3541, target efi-510203), apo open3 partially disordered
c4ci7A_ hydrolase Chain: A: cell surface protein (putative cell surface-associated the crystal structure of the cysteine protease and lectin-like2 domains of cwp84, a surface layer associated protein of clostridium3 difficile
c4pfrA_ solute-binding protein Chain: A: trap dicarboxylate transporter, dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 rhodobacter sphaeroides (rsph17029_3541, target efi-510203), apo open3 partially disordered
c4pe3A_ solute-binding protein Chain: A: trap dicarboxylate transporter-dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 rhodobacter sphaeroides (rsph17029_3620, target efi-510199), apo open3 structure
c4ojcA_ membrane protein Chain: A: eff-1a; crystal structure of the wild-type full-length trimeric ectodomain of2 the c. elegans fusion protein eff-1
c4n0tA_ rna binding protein/rna Chain: A: u4/u6 snrna-associated-splicing factor prp24; structure of an entwined u6 rna/prp24 complex and implications for2 snrnp assembly
c2mkvA_ transport protein Chain: A: sodium/potassium-transporting atpase subunit gamma; structure of the na,k-atpase regulatory protein fxyd2b in micelles
c4o6mA_ transferase Chain: A: af2299, a cdp-alcohol phosphotransferase; structure of a membrane protein
c4l0kC_ hydrolase Chain: C: draiii; crystal structure of a type ii restriction endonuclease
c4cuwn_ ribosome Chain: N: el15; kluyveromyces lactis 80s ribosome in complex with crpv-ires
c4pf8A_ transport protein Chain: A: trap-t family transporter, dctp (periplasmic binding) crystal structure of a trap periplasmic solute binding protein from2 sulfitobacter sp. nas-14.1 (target efi-510299) with bound beta-d-3 galacturonate
c4q7eA_ signaling protein Chain: A: response regulator of a two component regulatory system; non-phosphorylated hemr receiver domain from leptospira biflexa
c4chhB_ chaperone Chain: B: protein interacting with hsp90 1; n-terminal domain of yeast pih1p
c4n6eB_ lyase/biosynthetic protein Chain: B: this/moad family protein; crystal structure of amycolatopsis orientalis bexx/cyso complex
c4ogqE_ electron transport Chain: E: cytochrome b6-f complex subunit 6; internal lipid architecture of the hetero-oligomeric cytochrome b6f2 complex
c4c0nA_ oxygen transport Chain: A: 2-on-2 hemoglobin; crystal structure of non symbiotic plant hemoglobin ahb3 (glb3) from2 arabidopsis thaliana
c4c6hA_ hydrolase Chain: A: haloalkane dehalogenase; haloalkane dehalogenase with 1-hexanol
c4pfiA_ transport protein Chain: A: trap dicarboxylate transporter-dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 marinobacter aquaeolei vt8 (maqu_2829, target efi-510133), apo open3 structure
c4nuxA_ immune system Chain: A: interleukin-17 receptor a; structure of receptor a
c4oi4D_ transcription Chain: D: protein pcf11; yeast clp1/pcf11 complex
c4oi4B_ transcription Chain: B: protein pcf11; yeast clp1/pcf11 complex
c2m2lA_ nuclear protein Chain: A: putative uncharacterized protein; solution structure of entamoeba histolytica hp1 chromodomain
c2mmwA_ antibiotic Chain: A: microcin j25; lasso peptide based integrin inhibitor: microcin j25 variant with rgd2 substitution of gly12-ile13-gly14
c4ogqH_ electron transport Chain: H: cytochrome b6-f complex subunit 8; internal lipid architecture of the hetero-oligomeric cytochrome b6f2 complex


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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