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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Apr 05

Fold library idPDB HeaderMoleculeTitle
c4p2nD_ viral protein Chain: D: major capsid protein; structure of the p domain from a gi.7 norovirus variant in complex2 with lex hbga
c3wdkA_ ligase Chain: A: 4-phosphopantoate--beta-alanine ligase; crystal structure of 4-phosphopantoate-beta-alanine ligase complexed2 with reaction intermediate
c4cr2P_ hydrolase Chain: P: 26s proteasome regulatory subunit rpn5; deep classification of a large cryo-em dataset defines the2 conformational landscape of the 26s proteasome
c4cr3S_ hydrolase Chain: S: 26s proteasome regulatory subunit rpn3; deep classification of a large cryo-em dataset defines the2 conformational landscape of the 26s proteasome
c4ls5A_ transferase Chain: A: 3-oxoacyl-[acyl-carrier-protein] synthase 2; crystal structure of beta-ketoacyl-acp synthase ii (fabf) from2 bacillus subtilis
c4c87A_ hydrolase Chain: A: esterase; esterase lpest1 from lactobacillus plantarum wcfs1
c4nwyA_ isomerase Chain: A: protein disulfide-isomerase-like protein of the testis; crystal structure of the b' domain of human protein disulfide2 isomerase-like protein of the testis (pdilt)
c4krtA_ hydrolase Chain: A: autolytic lysozyme; x-ray structure of endolysin from clostridium perfringens phage2 phism101
c4cr2R_ hydrolase Chain: R: 26s proteasome regulatory subunit rpn7; deep classification of a large cryo-em dataset defines the2 conformational landscape of the 26s proteasome
c4cr4O_ hydrolase Chain: O: 26s proteasome regulatory subunit rpn9; deep classification of a large cryo-em dataset defines the2 conformational landscape of the 26s proteasome
c4o65A_ oxidoreductase Chain: A: putative archaeal ammonia monooxygenase subunit b; crystal structure of the cupredoxin domain of amob from nitrosocaldus2 yellowstonii
c4cr2Y_ hydrolase Chain: Y: 26s proteasome complex subunit sem1; deep classification of a large cryo-em dataset defines the2 conformational landscape of the 26s proteasome
c4cn0A_ cell cycle Chain: A: protein ahnak2; an intertwined homodimer of the pdz homology domain of ahnak2
c4coaA_ hydrolase Chain: A: kynurenine formamidase; crystal structure of kynurenine formamidase from bacillus2 anthracis complexed with 2-aminoacetophenone.
c4cr4U_ hydrolase Chain: U: 26s proteasome regulatory subunit rpn8; deep classification of a large cryo-em dataset defines the2 conformational landscape of the 26s proteasome
c4cr3Y_ hydrolase Chain: Y: 26s proteasome complex subunit sem1; deep classification of a large cryo-em dataset defines the2 conformational landscape of the 26s proteasome
c2m6aA_ antimicrobial protein Chain: A: predicted protein; nmr spatial structure of the antimicrobial peptide tk-amp-x2
c4mlqA_ transferase Chain: A: porphobilinogen deaminase; crystal structure of bacillus megaterium porphobilinogen deaminase
c4cmzC_ cell cycle Chain: C: periaxin; an intertwined homodimer of the pdz homology domain of periaxin
c4cogB_ hydrolase Chain: B: kynurenine formamidase; crystal structure of kynurenine formamidase from2 burkholderia cenocepacia
c2m3aA_ dna binding protein Chain: A: protein knl-2; nmr solution structure of a myb-like dna binding domain of knl-2 from2 c. elegans
c4pw0A_ hydrolase Chain: A: alpha/beta hydrolase fold protein; alpha/beta hydrolase fold protein from chitinophaga pinensis
c4po6A_ transferase Chain: A: non-receptor tyrosine-protein kinase tyk2; crystal structure of the human tyk2 ferm and sh2 domains with an2 ifnar1 intracellular peptide
c2mgsA_ signaling protein Chain: A: c-x-c motif chemokine 5; solution structure of cxcl5
c2mm4A_ viral protein Chain: A: envelope small membrane protein; structure of a conserved golgi complex-targeting signal in coronavirus2 envelope proteins
c4cv7A_ toxin Chain: A: virulence associated protein vapb; crystal structure of rhodococcus equi vapb
c4cr3Q_ hydrolase Chain: Q: 26s proteasome regulatory subunit rpn6; deep classification of a large cryo-em dataset defines the2 conformational landscape of the 26s proteasome
c4c7nB_ transcription Chain: B: synthetic alpha-helix, im10; crystal structure of the synthetic peptide im10 in complex2 with the coiled-coil region of mitf
c4kboA_ signaling protein Chain: A: stress-70 protein, mitochondrial; crystal structure of the human mortalin (grp75) atpase domain in the2 apo form
c4cilA_ signaling protein Chain: A: yopm-cap, internalin b; yopm-inlb: hybrid leucine-rich repeat protein
c4cr2Z_ hydrolase Chain: Z: 26s proteasome regulatory subunit rpn1; deep classification of a large cryo-em dataset defines the2 conformational landscape of the 26s proteasome
c4bfcA_ transferase Chain: A: 3-deoxy-d-manno-octulosonic-acid transferase; crystal structure of the c-terminal cmp-kdo binding domain2 of waaa form acinetobacter baumannii
c4cobA_ hydrolase Chain: A: kynurenine formamidase; crystal structure kynurenine formamidase from pseudomonas aeruginosa
c4ponB_ transferase Chain: B: putative rna methylase; the crystal structure of a putative sam-dependent methyltransferase,2 ytqb, from bacillus subtilis
c4cr2T_ hydrolase Chain: T: 26s proteasome regulatory subunit rpn12; deep classification of a large cryo-em dataset defines the2 conformational landscape of the 26s proteasome
c4nvwU_ ribosome/antibiotic Chain: U: 30s ribosomal protein thx; crystal structure of antibiotic dityromycin bound to 70s ribosome
c4cr4Y_ hydrolase Chain: Y: 26s proteasome complex subunit sem1; deep classification of a large cryo-em dataset defines the2 conformational landscape of the 26s proteasome
c2mfrA_ transferase Chain: A: insulin receptor; solution structure of the transmembrane domain of the insulin receptor2 in micelles
c4p3xA_ transferase Chain: A: quinolinate synthase a; structure of the fe4s4 quinolinate synthase nada from thermotoga2 maritima
c4jz6A_ oxidoreductase Chain: A: salicylaldehyde dehydrogenase nahf; crystal structure of a salicylaldehyde dehydrogenase from pseudomonas2 putida g7 complexed with salicylaldehyde
c4nvyU_ ribosome/antibiotic Chain: U: 30s ribosomal protein thx; crystal structure of antibiotic ge82832 bound to 70s ribosome
c4bk8A_ oxidoreductase Chain: A: desulfoferrodoxin, ferrous iron-binding region; superoxide reductase (neelaredoxin) from ignicoccus2 hospitalis
c4po6B_ transferase Chain: B: interferon alpha/beta receptor 1; crystal structure of the human tyk2 ferm and sh2 domains with an2 ifnar1 intracellular peptide
c4nvuU_ ribosome/antibiotic Chain: U: 30s ribosomal protein thx; crystal structure of antibiotic dityromycin bound to 70s ribosome
c4p52A_ transferase Chain: A: homoserine kinase; crystal structure of homoserine kinase from cytophaga hutchinsonii2 atcc 33406, nysgrc target 032717.
c4nw0U_ ribosome/antibiotic Chain: U: 30s ribosomal protein thx; crystal structure of antibiotic ge82832 bound to 70s ribosome
c2mgyA_ membrane protein Chain: A: translocator protein; solution structure of the mitochondrial translocator protein (tspo) in2 complex with its high-affinity ligand pk11195


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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