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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Mar 29

Fold library idPDB HeaderMoleculeTitle
c3whlB_ hydrolase/chaperone Chain: B: probable 26s proteasome regulatory subunit p27; crystal structure of nas2 n-terminal domain complexed with pan-rpt5c2 chimera
c4nj7P_ protein binding Chain: P: auxin response factor 7; pb1 domain of atarf7 - semet derivative
c4ip8B_ protein binding Chain: B: serum amyloid a-1 protein; structure of human serum amyloid a1
c4bffK_ oxidoreductase Chain: K: superoxide reductase; superoxide reductase (neelaredoxin) from archaeoglobus2 fulgidus in the reduced form
c4m90A_ oxidoreductase Chain: A: tumor suppressor candidate 3; crystal structure of oxidized hn33/tusc3
c3wb9A_ oxidoreductase Chain: A: diaminopimelate dehydrogenase; crystal structures of meso-diaminopimelate dehydrogenase from2 symbiobacterium thermophilum
c4mzqG_ lyase Chain: G: beta-alanyl-coa:ammonia lyase; beta-alanyl-coa:ammonia lyase from clostridium propionicum in complex2 with propionyl-coa
c4l0zA_ transcription/dna Chain: A: runt-related transcription factor 1; crystal structure of runx1 and ets1 bound to tcr alpha promoter2 (crystal form 2)
c4mycC_ transport protein Chain: C: iron-sulfur clusters transporter atm1, mitochondrial; structure of the mitochondrial abc transporter, atm1
c4immA_ chaperone Chain: A: outer membrane assembly lipoprotein yfgl; the crystal structure of bamb from moraxella catarrhalis
c4m3lC_ ligase Chain: C: e3 ubiquitin-protein ligase trim63; crystal structure of the coiled coil domain of murf1
c4ojpC_ viral protein Chain: C: tailspike protein; crystal structure of putative tailspike protein (tsp1, orf210) from2 escherichia coli o157:h7 bacteriohage cba120 in complex with maltose
c4ntqA_ toxin Chain: A: contact-dependent inhibitor a; cdia-ct/cdii toxin and immunity complex from enterobacter cloacae
c4or8A_ viral protein Chain: A: membrane-associated protein vp24; crystal structure of marburg virus vp24
c4hnxA_ transferase Chain: A: n-terminal acetyltransferase a complex subunit nat1; the nata acetyltransferase complex bound to ppgpp
c3j65q_ ribosome Chain: Q: 60s ribosomal protein l18; arx1 pre-60s particle. this entry contains the r-proteins and2 biogenesis factors.
c4o62A_ metal/dna binding protein Chain: A: zinc finger cw-type pwwp domain protein 2; cw-type zinc finger of zcwpw2 in complex with the amino terminus of2 histone h3
c4ix8B_ transferase Chain: B: tyrosine aminotransferase; crystal structure of tyrosine aminotransferase from leishmania2 infantum
c4odaC_ hydrolase/replication Chain: C: dna polymerase processivity factor component a20; crystal structure of the vaccinia virus dna polymerase holoenzyme2 subunit d4 in complex with the a20 n-terminus
c4p31B_ hydrolase Chain: B: lipopolysaccharide export system atp-binding protein lptb; crystal structure of a selenomethionine derivative of e. coli lptb in2 complex with adp-magensium
c4nm5B_ transferase/peptide Chain: B: axin-1; crystal structure of gsk-3/axin complex bound to phosphorylated wnt2 receptor lrp6 c-motif
c4mp0B_ hydrolase Chain: B: serine/threonine-protein phosphatase 1 regulatory subunit structure of a second nuclear pp1 holoenzyme, crystal form 2
c4odaD_ hydrolase/replication Chain: D: dna polymerase processivity factor component a20; crystal structure of the vaccinia virus dna polymerase holoenzyme2 subunit d4 in complex with the a20 n-terminus
c4nm3B_ transferase/peptide Chain: B: axin-1; crystal structure of gsk-3/axin complex bound to phosphorylated n-2 terminal auto-inhibitory ps9 peptide
c4m5bA_ membrane protein Chain: A: cobalamin biosynthesis protein cbim; crystal structure of an truncated transition metal transporter
c4bemJ_ hydrolase Chain: J: f1fo atpase c1 subunit; crystal structure of the f-type atp synthase c-ring from2 acetobacterium woodii.
c2m64A_ plant protein Chain: A: phlp5; 1h, 13c and 15n chemical shift assignments for phl p 5a
c3j5l2_ ribosome/antibiotic Chain: 2: 50s ribosomal protein l34; structure of the e. coli 50s subunit with ermbl nascent chain
c4nstA_ transferase/transcription Chain: A: cyclin-dependent kinase 12; crystal structure of human cdk12/cyclin k in complex with adp-aluminum2 fluoride
c3wh1A_ hydrolase Chain: A: chitinase a; crystal structure of a family gh19 chitinase from bryum coronatum in2 complex with (glcnac)4 at 1.0 a resolution
c4byfA_ hydrolase Chain: A: unconventional myosin-ic; crystal structure of human myosin 1c in complex with2 calmodulin in the pre-power stroke state
c4hnyB_ transferase Chain: B: n-terminal acetyltransferase a complex catalytic subunit apo n-terminal acetyltransferase complex a
c4nqfB_ transferase Chain: B: nucleotidyltransferase; crystal structure of hepn domain protein
c4nm0B_ transferase/peptide Chain: B: axin-1; crystal structure of peptide inhibitor-free gsk-3/axin complex
c2m1bA_ transcription regulator Chain: A: transcriptional regulatory protein, c terminal family solution structure of the chxr dna-binding domain
c4m5cA_ membrane protein Chain: A: cobalamin biosynthesis protein cbim; crystal structure of an truncated transition metal transporter
c4nu1B_ transferase/peptide Chain: B: axin-1; crystal structure of a transition state mimic of the gsk-3/axin2 complex bound to phosphorylated n-terminal auto-inhibitory ps93 peptide
c3j66s_ ribosome Chain: S: arx1 pre-60s particle. this entry contains the alternative position2 for rlp7.
c4mp0D_ hydrolase Chain: D: serine/threonine-protein phosphatase 1 regulatory subunit structure of a second nuclear pp1 holoenzyme, crystal form 2
c3j65p_ ribosome Chain: P: 60s ribosomal protein l5; arx1 pre-60s particle. this entry contains the r-proteins and2 biogenesis factors.
c4lvqA_ transport protein Chain: A: phosphate-binding protein psts 3; crystal structure of the m. tuberculosis phosphate binding protein2 psts3
c4ntqB_ toxin Chain: B: ecl cdii; cdia-ct/cdii toxin and immunity complex from enterobacter cloacae
c2mc5A_ protein binding Chain: A: 45l; a bacteriophage transcription regulator inhibits bacterial2 transcription initiation by -factor displacement
c4o30B_ transferase Chain: B: histone-lysine n-methyltransferase atxr6, putative; crystal structure of atxr5 in complex with histone h3.1 and adohcy
c4jr8A_ proton transport Chain: A: cruxrhodopsin-3; crystal structure of cruxrhodopsin-3 from haloarcula vallismortis at2 2.3 angstrom resolution
c4kmgA_ electron transport Chain: A: cytochrome c6 (soluble cytochrome f) (cytochrome c553); crystal structure of cytochrome c6b from synechococcus sp. wh8102
c4nm7B_ transferase/peptide Chain: B: axin-1; crystal structure of gsk-3/axin complex bound to phosphorylated wnt2 receptor lrp6 e-motif
c4nlbA_ hydrolase Chain: A: ribosomal rna processing protein 6; crystal structure of the catalytic core of rrp6 from trypanosoma2 brucei
c3j65n_ ribosome Chain: N: 60s ribosomal protein l28; arx1 pre-60s particle. this entry contains the r-proteins and2 biogenesis factors.
c4ntjA_ membrane protein Chain: A: p2y purinoceptor 12, soluble cytochrome b562; structure of the human p2y12 receptor in complex with an2 antithrombotic drug
c3j65o_ ribosome Chain: O: 60s ribosomal protein l15; arx1 pre-60s particle. this entry contains the r-proteins and2 biogenesis factors.
c4nwbA_ unknown function Chain: A: mrna turnover protein 4; crystal structure of mrt4


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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