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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Mar 22

Fold library idPDB HeaderMoleculeTitle
c4nxjC_ dna binding protein Chain: C: bromodomain protein; crystal structure of pf3d7_1475600, a bromodomain from plasmodium2 falciparum
c4lnsA_ ligase Chain: A: asparagine synthetase a; crystal structure of asparagine synthetase a (asna) from trypanosoma2 brucei
c4c5lC_ transferase Chain: C: phosphomethylpyrimidine kinase; structure of the pyridoxal kinase from staphylococcus2 aureus in complex with pyridoxal
c4bmvH_ oxidoreductase Chain: H: short-chain dehydrogenase; short-chain dehydrogenase from sphingobium yanoikuyae in2 complex with nadph
c4kdiC_ signaling protein/hydrolase Chain: C: ubiquitin thioesterase otu1; crystal structure of p97/vcp n in complex with otu1 ubxl
c4j1sA_ oxidoreductase Chain: A: polyketide synthase pksj; crystal structure of a ketoreductase domain from the bacillaene2 assembly line
c4o1sB_ splicing Chain: B: v-type atp synthase alpha chain; crystal structure of tvovma intein
c4o8wE_ structural protein, signaling protein Chain: E: spore germination protein; crystal structure of the gerd spore germination protein
c4k70B_ viral protein Chain: B: ul37; crystal structure of n-terminal half of pseudorabiesvirus ul37 protein
c4oc8D_ hydrolase Chain: D: restriction endonuclease aspbhi; dna modification-dependent restriction endonuclease aspbhi
c4mrnB_ transport protein Chain: B: abc transporter related protein; structure of a bacterial atm1-family abc transporter
c3wmeA_ transport protein Chain: A: atp-binding cassette, sub-family b, member 1; crystal structure of an inward-facing eukaryotic abc multidrug2 transporter
c4nf9A_ cell cycle Chain: A: protein casc5; structure of the knl1/nsl1 complex
c4od5C_ transferase Chain: C: 4-hydroxybenzoate octaprenyltransferase; substrate-bound structure of a ubia homolog from aeropyrum pernix k1
c4nn7A_ cytokine/cytokine receptor Chain: A: thymic stromal lymphopoietin; cytokine receptor complex - crystal form 2
c4nz0F_ transferase Chain: F: genome polyprotein; the emcv 3dpol structure at 2.8a resolution
c4ok7A_ hydrolase Chain: A: endolysin; structure of bacteriophage spn1s endolysin from salmonella typhimurium
c4oqjA_ hydrolase Chain: A: pks; crystal structure of polyketide synthases from streptomyces albus
c4bmtB_ oxidoreductase Chain: B: ribonucleoside-diphosphate reductase subunit beta; crystal structure of ribonucleotide reductase di-iron nrdf2 from bacillus cereus
c4nn5C_ cytokine/cytokine receptor Chain: C: cytokine receptor-like factor 2; cytokine receptor complex - crystal form 1a
c4csoD_ transcription Chain: D: orfy protein, transcription factor; the structure of orfy from thermoproteus tenax
c4j0eB_ oxidoreductase Chain: B: probable 3-hydroxyacyl-coa dehydrogenase f54c8.1; crystal structure of 3-hydroxyacyl-coa dehydrogenase from2 caenorhadbitis elegans in p1 space group
c4jnrE_ hydrolase Chain: E: putative cytosine deaminase and related metal-dependent crystal structure of 5-methylcytosine deaminase from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 liganded with 5-fluorocytosine
c2mkdA_ dna binding protein Chain: A: zinc finger protein 346; human jaz zf3 residues 168-227
c4oseA_ hydrolase Chain: A: putative hydrolase; x-ray crystal structure of a putative hydrolase from rickettsia typhi
c4okqA_ rna binding protein Chain: A: hut operon positive regulatory protein; crystal structure of the single-stranded rna binding protein hutp from2 geobacillus thermodenitrificans
c4ckcD_ transferase/hydrolase Chain: D: mrna-capping enzyme catalytic subunit; vaccinia virus capping enzyme complexed with sah (monoclinic form)
c4nwiB_ hydrolase Chain: B: 7-methylguanosine phosphate-specific 5'-nucleotidase; crystal structure of cytosolic 5'-nucleotidase iiib (cn-iiib) bound to2 cytidine
c4lfuA_ dna binding protein Chain: A: regulatory protein sdia; crystal structure of escherichia coli sdia in the space group c2
c4m0qB_ viral protein Chain: B: membrane-associated protein vp24; ebola virus vp24 structure
c3wp6A_ hydrolase Chain: A: cdbfv; the complex structure of cdbfv e109a with xylotriose
c4okuA_ cell adhesion Chain: A: micronemal protein mic2; structure of toxoplasma gondii promic2
c4or2A_ signaling protein Chain: A: soluble cytochrome b562, metabotropic glutamate receptor 1; human class c g protein-coupled metabotropic glutamate receptor 1 in2 complex with a negative allosteric modulator
c4nn5B_ cytokine/cytokine receptor Chain: B: interleukin-7 receptor subunit alpha; cytokine receptor complex - crystal form 1a
c4l4qA_ transferase Chain: A: s-adenosylmethionine synthase; methionine adenosyltransferase
c4p1lA_ transport protein Chain: A: trap dicarboxylate transporter, dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 chromohalobacter salexigens dsm 3043 (csal_2479), target efi-510085,3 with bound d-glucuronate, spg i213
c4oc8A_ hydrolase Chain: A: restriction endonuclease aspbhi; dna modification-dependent restriction endonuclease aspbhi
c4oteA_ protein transport Chain: A: lipoprotein; crystal structure of a putative lipoprotein (cd630_1653) from2 clostridium difficile 630 at 2.20 a resolution
c2mkfA_ signaling protein Chain: A: brca1-a complex subunit rap80; solution structure of the e81 deletion mutant of the tandem uims of2 rap80
c2m5tA_ viral protein Chain: A: human rhinovirus 2a proteinase; solution structure of the 2a proteinase from a common cold agent,2 human rhinovirus rv-c02, strain w12
c4nncA_ lyase Chain: A: obca, oxalate biosynthetic component a; ternary complex of obca with c4-coa adduct and oxalate
c4j7rA_ hydrolase Chain: A: isoamylase; crystal structure of chlamydomonas reinhardtii isoamylase 1 (isa1)
c4o1rA_ splicing Chain: A: replicative dna helicase; crystal structure of npudnab intein
c4npgA_ structural genomics, unknown function Chain: A: putative lipoprotein; crystal structure of a hypothetical protein (bt1938) from bacteroides2 thetaiotaomicron vpi-5482 at 2.50 a resolution
c4miwA_ viral protein, transferase Chain: A: rna-directed rna polymerase l; high-resolution structure of the n-terminal endonuclease domain of the2 lassa virus l polymerase
c4p1eA_ transport protein Chain: A: trap dicarboxylate transporter, dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 escherichia fergusonii (efer_1530), target efi-510119, apo open3 structure, phased with iodide
c4be4A_ hydrolase Chain: A: sterol esterase; closed conformation of o. piceae sterol esterase
c4l69A_ transferase Chain: A: ribosomal rna small subunit methyltransferase e; rv2372c of mycobacterium tuberculosis is rsme like methyltransferse


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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