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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Mar 08

Fold library idPDB HeaderMoleculeTitle
c4mp6A_ oxidoreductase Chain: A: putative ornithine cyclodeaminase; staphyloferrin b precursor biosynthetic enzyme sbnb bound to citrate2 and nad+
c4lgoC_ cell adhesion Chain: C: vompd; crystal structure of n-terminal domain 1 of vompd from bartonella2 quintana
c4ckmA_ structural protein Chain: A: sas-6; structure of the n-terminal domain of leishmania sas-6
c4orlA_ structural genomics, unknown function Chain: A: uncharacterized protein; crystal structure of a hypothetical protein (bacova_04304) from2 bacteroides ovatus atcc 8483 at 1.40 a resolution
c4iy3B_ metal transport Chain: B: metal transporter cnnm4; structural and ligand binding properties of the bateman domain of2 human magnesium transporters cnnm2 and cnnm4
c4jnaA_ oxidoreductase/oxidoreductase inhibitor Chain: A: deph; crystal structure of the deph complex with dimethyl-fk228
c4niqC_ protein transport Chain: C: vps4-associated protein 1; crystal structure of vps4 mit-vfa1 mim2
c4o1jB_ lyase Chain: B: carbonic anhydrase; crystal structure of cas1 from s. macrospora
c4cknA_ structural protein Chain: A: sas-6; structure of an n-terminal fragment of leishmania sas-62 containing parts of its coiled coil domain, f257e mutant
c4jbtB_ oxidoreductase/substrate Chain: B: cytochrome p450 monooxygenase; the 2.2 a crystal structure of cyp154c5 from nocardia farcinica in2 complex with androstenedione
c4nqkD_ hydrolase/apoptosis Chain: D: probable atp-dependent rna helicase ddx58; structure of an ubiquitin complex
c4ntcA_ oxidoreductase Chain: A: glit; crystal structure of glit
c4meiA_ protein transport Chain: A: virb8 protein; crystal structure of a virb8 type iv secretion system machinery2 soluble domain from bartonella tribocorum
c4o3vA_ protein transport Chain: A: virb8-like protein of type iv secretion system; crystal structure of a virb8-like protein of type iv secretion system2 from rickettsia typhi
c4cllA_ lyase Chain: A: adenylate cyclase type 10; crystal structure of human soluble adenylyl cyclase in2 complex with bicarbonate
c2m5sA_ viral protein Chain: A: coat protein; high-resolution nmr structure and cryo-em imaging support multiple2 functional roles for the accessory i-domain of phage p22 coat protein
c3wo9A_ immune system Chain: A: variable lymphocyte receptor c; crystal structure of the lamprey variable lymphocyte receptor c
c4nhfF_ protein transport Chain: F: trwg protein; crystal structure of the soluble domain of trwg type iv secretion2 machinery from bartonella grahamii
c4o1kA_ lyase Chain: A: carbonic anhydrase; crystal structure of cas2 from s. macrospora
c4m7vA_ oxidoreductase Chain: A: dihydrofolate reductase; dihydrofolate reductase from enterococcus faecalis complexed with2 nadp(h)and rab-propyl
c4mckA_ hydrolase Chain: A: chitinase; crystal structure of family gh19, class iv chitinase from zea mays
c4lmgD_ transcription activator/dna Chain: D: iron-regulated transcriptional activator aft2; crystal structure of aft2 in complex with dna
c4ngdA_ hydrolase/rna Chain: A: endoribonuclease dicer; structure of human dicer platform-paz-connector helix cassette in2 complex with 12-mer sirna having 5'-p and uu-3' ends (1.95 angstrom3 resolution)
c4oj7E_ isomerase Chain: E: chorismate mutase; crystal structure of chorismate mutase from burkholderia thailandensis
c4ouoA_ immune system Chain: A: anti bla g 1 scfv; anti-bla g 1 scfv
c4nleB_ lyase Chain: B: adenylosuccinate lyase; crystal structure of apo adenylosuccinate lyase from mycobacterium2 smegmatis
c4jguB_ metal binding protein Chain: B: colh protein; crystal structure of clostridium histolyticum colh collagenase2 collagen-binding domain 2b at 1.4 angstrom resolution in presence of3 calcium
c3wkvA_ proton transport Chain: A: ion channel; voltage-gated proton channel: vsop/hv1 chimeric channel
c4o9rA_ signaling protein Chain: A: smoothened homolog/soluble cytochrome b562 chimeric human smoothened receptor structure in complex with cyclopamine
c4onxB_ transferase Chain: B: sensor histidine kinase; 2.8 angstrom crystal structure of sensor domain of histidine kinase2 from clostridium perfringens.
c4l1dC_ membrane protein Chain: C: sodium channel subunit beta-3; voltage-gated sodium channel beta3 subunit ig domain
c4cosA_ transcription Chain: A: protein kinase c-binding protein 1; crystal structure of the phd-bromo-pwwp cassette of human prkcbp1
c4l68A_ signaling protein Chain: A: leucine-rich repeat protein kinase-like protein; structure of the psedudokinase domain of bir2, an immune regulator of2 the rlk/pelle family
c4jcwB_ sugar binding protein Chain: B: cellulase; crystal structure of clavibacter michiganensis expansin in complex2 with cellopentaose
c4n4hA_ transcription Chain: A: zinc finger mynd domain-containing protein 11; crystal structure of the bromo-pwwp of the mouse zinc finger mynd-type2 containing 11 isoform alpha in complex with histone h3.1k36me3
c3w5kB_ nuclear protein/metal binding protein Chain: B: zinc finger protein snai1; crystal structure of snail1 and importin beta complex
c4odjA_ transferase Chain: A: s-adenosylmethionine synthase; crystal structure of a putative s-adenosylmethionine synthetase from2 cryptosporidium hominis in complex with s-adenosyl-methionine
c2mk2A_ hydrolase Chain: A: phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2; solution nmr structure of n-terminal domain (sh2 domain) of human2 inositol polyphosphate phosphatase-like protein 1 (inppl1) (fragment3 20-117), northeast structural genomics consortium target hr9134a
c2mfqB_ transferase Chain: B: bdnf/nt-3 growth factors receptor; nmr solution structures of frs2a ptb domain with neurotrophin receptor2 trkb
c2m5jA_ signaling protein Chain: A: hasr protein; solution structure of the periplasmic signaling domain of hasr, a2 tonb-dependent outer membrane heme transporter
c4k83A_ structural protein Chain: A: lv-ranaspumin (lv-rsn-1); crystal structure of lv-ranaspumin (lv-rsn-1) from the foam nest of2 leptodactylus vastus, orthorhombic crystal form
c2mheB_ structural genomics, unknown function Chain: B: uncharacterized protein; nmr structure of the protein np_419126.1 from caulobacter crescentus
c4bpyA_ chaperone Chain: A: sco protein; crystal structure of the c90a mutant of the sco copper chaperone2 protein from streptomyces lividans
c4ol8A_ transferase, hydrolase/rna/dna Chain: A: reverse transcriptase/ribonuclease h; ty3 reverse transcriptase bound to dna/rna
c4o6gA_ unknown function Chain: A: uncharacterized protein; rv3902c from m. tuberculosis
c4oo3A_ oxidoreductase Chain: A: hypothetical protein; crystal structure of a hypothetical protein (parmer_00841) from2 parabacteroides merdae atcc 43184 at 2.23 a resolution
c4lhfA_ viral protein Chain: A: regulatory protein cox; crystal structure of a dna binding protein from phage p2
c4j8lA_ unknown function Chain: A: uncharacterized protein yhfs; crystal structure of the pyridoxal-5'-phosphate dependent protein yhfs2 from escherichia coli
c4ol8B_ transferase, hydrolase/rna/dna Chain: B: reverse transcriptase/ribonuclease h; ty3 reverse transcriptase bound to dna/rna
c2mabA_ structural protein Chain: A: aciniform spidroin; untangling the solution structure of c-terminal domain of aciniform2 spidroin
c2m5lA_ viral protein Chain: A: ns5a protein; ns5a308
c3wdrA_ hydrolase Chain: A: beta-mannanase; crystal structure of beta-mannanase from a symbiotic protist of the2 termite reticulitermes speratus complexed with gluco-manno-3 oligosaccharide
c2mahA_ oncoprotein Chain: A: protein smoothened; solution structure of smoothened
c4ntdA_ oxidoreductase Chain: A: thioredoxin reductase; crystal structure of hlmi
c2m4iA_ cell cycle Chain: A: septum site-determining protein minc; solution structure of bacillus subtilis minc n-terminal domain
c4niqD_ protein transport Chain: D: vps4-associated protein 1; crystal structure of vps4 mit-vfa1 mim2
c4js0B_ signaling protein/signaling protein Chain: B: brain-specific angiogenesis inhibitor 1-associated protein complex of cdc42 with the crib-pr domain of irsp53


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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