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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Feb 15

Fold library idPDB HeaderMoleculeTitle
c4m20D_ hydrolase Chain: D: uncharacterized protein; crystal structure of hypothetical protein sav0944 from staphylococcus2 aureus subsp. aureus mu50
c3w93C_ transcription Chain: C: coiled coil peptide; crystal structure analysis of the synthetic gcn4 ester coiled coil2 peptide
c4bp9A_ hydrolase Chain: A: oligopeptidasse b; oligopeptidase b from trypanosoma brucei with covalently2 bound antipain - closed form
c4biyD_ transferase Chain: D: sensor protein cpxa; crystal structure of cpxahdc (monoclinic form 2)
c3w93B_ transcription Chain: B: coiled coil peptide; crystal structure analysis of the synthetic gcn4 ester coiled coil2 peptide
c4jhlA_ hydrolase Chain: A: acetyl xylan esterase; crystal structure of of axe2, an acetylxylan esterase from geobacillus2 stearothermophilus
c4oo2D_ oxidoreductase Chain: D: chlorophenol-4-monooxygenase; crystal structure of apo-form of sgcc protein: an hpab-family2 monooxygenase from streptomyces globisporus
c4nk4E_ oxidoreductase Chain: E: enoyl-[acyl-carrier-protein] reductase [nadh]; crystal structure of fabi from candidatus liberibacter asiaticus
c4mi7A_ hydrolase, toxin Chain: A: bacteriophage encoded virulence factor; crystal structure of salmonella effector protein gtge
c2mgpA_ membrane protein Chain: A: merozoite surface protein 1; structure of plasmodium yoelii merozoite surface protein 1 - c-2 terminal domain
c3w7aD_ oxidoreductase Chain: D: fmn-dependent nadh-azoreductase; crystal structure of azoreductase azrc fin complex with sulfone-2 modified azo dye acid red 88
c4cmqB_ hydrolase Chain: B: crispr-associated endonuclease cas9/csn1; crystal structure of mn-bound s.pyogenes cas9
c4inzB_ hydrolase Chain: B: soluble epoxide hydrolase; the crystal structure of m145a mutant of an epoxide hydrolase from2 bacillus megaterium
c4oneA_
c4chtA_ cell cycle Chain: A: dna topoisomerase 3-alpha; crystal structure of the human topoisomerase iii alpha-rmi12 complex with bound calcium ion
c4ce5A_ transferase Chain: A: at-omegata; first crystal structure of an (r)-selective omega-transaminase2 from aspergillus terreus
c4biuB_ transferase Chain: B: sensor protein cpxa; crystal structure of cpxahdc (orthorhombic form 1)
c4ll7C_ transport protein Chain: C: swi5-dependent ho expression protein 3; structure of she3p amino terminus.
c4ldxB_ transcription/dna Chain: B: auxin response factor 1; crystal structure of the dna binding domain of arabidopsis thaliana2 auxin response factor 1 (arf1) in complex with protomor-like sequence3 er7
c4cbvE_ transcription Chain: E: come; x-ray structure of full-length come from streptococcus pneumoniae.
c4m1bA_ hydrolase Chain: A: polysaccharide deacetylase; structural determination of ba0150, a polysaccharide deacetylase from2 bacillus anthracis
c2mimA_ immune system Chain: A: cd3 epsilon protein, linker, cd3 glycoprotein; immune signalling subunit
c3we0A_ oxidoreductase Chain: A: l-amino acid oxidase/monooxygenase; l-amino acid oxidase/monooxygenase from pseudomonas sp. aiu 813
c4obiA_ structural genomics, unknown function Chain: A: uncharacterized protein; crystal structure of a hypothetical protein (ef3258) from enterococcus2 faecalis v583 at 1.73 a resolution
c4l6uB_ unknown function Chain: B: putative uncharacterized protein; crystal structure of af1868: cmr1 subunit of the cmr rna silencing2 complex
c4ll8E_ motor protein/transport protein Chain: E: swi5-dependent ho expression protein 3; complex of carboxy terminal domain of myo4p and she3p middle fragment
c4oo0B_ hydrolase Chain: B: maf-like protein bcal2394; crystal structure of maf-like protein bcej2315_23540 from burkholderia2 cenocepacia
c4l8iA_ immune system Chain: A: rsv epitope scaffold ffl_005; crystal structure of rsv epitope scaffold ffl_005
c3w8vA_ transcription Chain: A: gcn4n coiled coil peptide; crystal structure analysis of the synthetic gcn4 coiled coil peptide
c4jzbA_ transferase/transferase inhibitor Chain: A: farnesyl pyrophosphate synthase; crystal structure of leshmaniasis major farnesyl diphosphate synthase2 in complex with 1-(2-hydroxy-2,2-diphosphonoethyl)-3-3 phenylpyridinium, ipp and ca2+
c4ogeA_ hydrolase Chain: A: hnh endonuclease domain protein; crystal structure of the type ii-c cas9 enzyme from actinomyces2 naeslundii
c4le5A_ transferase Chain: A: s-adenosylmethionine synthetase; structure of an unusual s-adenosylmethionine synthetase from2 campylobacter jejuni
c4nreA_ oxidoreductase Chain: A: arachidonate 15-lipoxygenase b; the structure of human 15-lipoxygenase-2 with a substrate mimic
c4iydA_ hormone Chain: A: insulin a chain; insulin glargine crystal structure 1
c2mgxA_ unknown function Chain: A: steroid receptor rna activator 1; nmr structure of sra1p c-terminal domain
c3w4rA_ hydrolase Chain: A: chitinase; crystal structure of an insect chitinase from the asian corn borer,2 ostrinia furnacalis
c3w92C_ transcription Chain: C: thioester coiled coil peptide; crystal structure analysis of the synthetic gcn4 thioester coiled coil2 peptide
c3zlbA_ transferase Chain: A: phosphoglycerate kinase; crystal structure of phosphoglycerate kinase from2 streptococcus pneumoniae
c3w8vC_ transcription Chain: C: gcn4n coiled coil peptide; crystal structure analysis of the synthetic gcn4 coiled coil peptide
c4kp4B_ transferase/signaling protein Chain: B: osmolarity sensor protein envz, histidine kinase; deciphering cis-trans directionality and visualizing2 autophosphorylation in histidine kinases.
c4ll8A_ motor protein/transport protein Chain: A: myosin-4; complex of carboxy terminal domain of myo4p and she3p middle fragment
c4iyfA_ hormone Chain: A: insulin a chain; insulin glargine crystal structure 2
c3w8vB_ transcription Chain: B: gcn4n coiled coil peptide; crystal structure analysis of the synthetic gcn4 coiled coil peptide
c4o8bA_ dna binding protein Chain: A: uncharacterized protein; crystal structure of transcriptional regulator bswr
c4ovxA_ isomerase Chain: A: xylose isomerase domain protein tim barrel; crystal structure of xylose isomerase domain protein from planctomyces2 limnophilus dsm 3776
c3w92A_ transcription Chain: A: thioester coiled coil peptide; crystal structure analysis of the synthetic gcn4 thioester coiled coil2 peptide
c4obmA_ transcription regulator Chain: A: uncharacterized protein; crystal structure of a hypothetical protein (eubsir_01389) from2 eubacterium siraeum dsm 15702 at 2.15 a resolution
c4lubA_ lyase Chain: A: putative prephenate dehydratase; x-ray structure of prephenate dehydratase from streptococcus mutans
c3w92B_ transcription Chain: B: thioester coiled coil peptide; crystal structure analysis of the synthetic gcn4 thioester coiled coil2 peptide
c4owfG_ transcription/protein binding Chain: G: e3 ubiquitin-protein ligase rnf31; crystal structure of the nemo cozi in complex with hoip nzf1 domain
c4jysA_ isomerase Chain: A: peptidyl-prolyl cis-trans isomerase; crystal structure of fkbp25 from plasmodium vivax
c4mcaB_ oxidoreductase Chain: B: glycerol dehydrogenase; crystal structure of glycerol dehydrogenase from serratia to 1.9a
c4lduA_ dna binding protein Chain: A: auxin response factor 5; crystal structure of the dna binding domain of arabidopsis thaliana2 auxin response factor 5
c3w93A_ transcription Chain: A: coiled coil peptide; crystal structure analysis of the synthetic gcn4 ester coiled coil2 peptide
c4obyA_ ligase Chain: A: arginine--trna ligase; crystal structure of e.coli arginyl-trna synthetase and ligand binding2 studies revealed key residues in arginine recognition


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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