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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Feb 08

Fold library idPDB HeaderMoleculeTitle
c3j61Z_ ribosome Chain: Z: 60s ribosomal protein l27e; localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
c4chcF_ viral protein Chain: F: polymerase acidic protein; crystal structure of the n-terminal domain of the pa2 subunit of thogoto virus polymerase (form 2)
c3wirD_ transferase Chain: D: kojibiose phosphorylase; crystal structure of kojibiose phosphorylase complexed with glucose
c4kc8A_ hydrolase Chain: A: glycoside hydrolase, family 43; crystal structure of endo-1,5-alpha-l-arabinanase from thermotoga2 petrophila rku-1 in complex with tris
c4h8mB_ de novo protein Chain: B: cc-hex-h24-a5/7c; crystal structure of a parallel 6-helix coiled coil cc-hex-h24-a5/7c
c4l6vd_ electron transport Chain: D: photosystem i subunit ii; crystal structure of a virus like photosystem i from the2 cyanobacterium synechocystis pcc 6803
c4ll1C_ antitumor protein/protein binding Chain: C: thioredoxin-interacting protein; the structure of the trx and txnip complex
c3wb1D_ transferase Chain: D: uncharacterized protein mj0488; hcgb from methanocaldococcus jannaschii
c4h8lD_ de novo protein Chain: D: cc-hex-d24-a5/7c; crystal structure of a parallel 6-helix coiled coil cc-hex-d24-a5/7c
c3j61L_ ribosome Chain: L: 60s ribosomal protein l13e; localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
c4nt1B_ transport protein Chain: B: accelerated-cell-death 11; crystal structure of apo-form of arabidopsis acd11 (accelerated-cell-2 death 11) at 1.8 angstrom resolution
c3j60H_ ribosome Chain: H: 40s ribosomal protein s7e; localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
c4m1rB_ hydrolase Chain: B: cellulase 5; structure of a novel cellulase 5 from a sugarcane soil metagenomic2 library
c3wn0A_ hydrolase Chain: A: extracellular exo-alpha-l-arabinofuranosidase; crystal structure of streptomyces coelicolor alpha-l-2 arabinofuranosidase in complex with l-arabinose
c4cgeC_ hydrolase Chain: C: resuscitation-promoting factor rpfe; bacterial secreted hydrolase a
c4jmfB_ toxin/chaperone Chain: B: probable chaperone; crystal structure of exot (residues 28 -77)- spcs complex from2 pseudomonas aeruginosa at 2.1 angstrom
c3j60b_ ribosome Chain: B: 40s ribosomal protein s1e; localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
c4h8gC_ de novo protein Chain: C: cc-hex-il-22; crystal structure of a parallel 6-helix coiled coil cc-hex-il- 22
c4h7rA_ de novo protein Chain: A: cc-hex-ii; crystal structure of a parallel 4-helix coiled coil cc-hex-ii
c4oabA_ transferase Chain: A: protein brassinosteroid insensitive 1; crystal structure of the bri1 kinase domain (865-1160) in complex with2 atp from arabidopsis thaliana
c4h8gK_ de novo protein Chain: K: cc-hex-il-22; crystal structure of a parallel 6-helix coiled coil cc-hex-il- 22
c2mh3B_ dna binding protein Chain: B: transcription factor hes-1; nmr structure of the basic helix-loop-helix region of the2 transcriptional repressor hes-1
c4ohcB_ transferase Chain: B: orotate phosphoribosyltransferase; crystal structure of orotate phosphoribosyltransferase (oprtase) from2 burkholderia cenocepacia
c4ofxA_ lyase Chain: A: cystathionine beta-synthase; crystal structure of a putative cystathionine beta-synthase from2 coxiella burnetii
c4kv9B_ hydrolase Chain: B: septin; gtpase domain of septin 10 from schistosoma mansoni in complex with2 gdp
c3weaA_ lipid binding protein Chain: A: niemann-pick type c2 protein; crystal structure of a niemann-pick type c2 protein from japanese2 carpenter ant
c4h8fA_ de novo protein Chain: A: cc-hex-ii-phi22; crystal structure of a parallel 4-helix coiled coil cc-hex-ii- 22
c4cg5C_ protein transport Chain: C: protein transport protein sec61 subunit beta; cryo-em of the sec61-complex bound to the 80s ribosome2 translating a secretory substrate
c4j16C_ oxidoreductase Chain: C: nad(p) transhydrogenase subunit beta; crystal structure of thermus thermophilus transhydrogenase2 heterotrimeric complex of the alpha1 subunit dimer with the nadp3 binding domain (domain iii) of the beta subunit
c4kcbB_ hydrolase Chain: B: arabinan endo-1,5-alpha-l-arabinosidase; crystal structure of exo-1,5-alpha-l-arabinanase from bovine ruminal2 metagenomic library
c4h8lE_ de novo protein Chain: E: cc-hex-d24-a5/7c; crystal structure of a parallel 6-helix coiled coil cc-hex-d24-a5/7c
c3wmrA_ hydrolase Chain: A: proline iminopeptidase; crystal structure of vinj
c4l6vm_ electron transport Chain: M: photosystem i reaction center subunit xii; crystal structure of a virus like photosystem i from the2 cyanobacterium synechocystis pcc 6803
c4ltbB_ metal binding protein Chain: B: tripartite motif-containing 25 variant; coiled-coil domain of trim25
c4o1oA_ transferase,hydrolase Chain: A: ribonuclease l; crystal structure of rnase l in complex with 2-5a
c4nqiD_ signaling protein Chain: D: sh3 domain-containing protein; structure of the n-terminal i-bar domain (1-259) of d.discoideum ibara
c4h8lA_ de novo protein Chain: A: cc-hex-d24-a5/7c; crystal structure of a parallel 6-helix coiled coil cc-hex-d24-a5/7c
c4h8mA_ de novo protein Chain: A: cc-hex-h24-a5/7c; crystal structure of a parallel 6-helix coiled coil cc-hex-h24-a5/7c
c4jmfA_ toxin/chaperone Chain: A: exoenzyme t; crystal structure of exot (residues 28 -77)- spcs complex from2 pseudomonas aeruginosa at 2.1 angstrom
c4bklE_ immune system Chain: E: j1 epitope; crystal structure of the arthritogenic antibody m2139 (fab2 fragment) in complex with the triple-helical j1 peptide
c4mb8B_ oxidoreductase Chain: B: uricase; evolutionary history and metabolic insights of ancient mammalian2 uricases
c4h8oD_ de novo protein Chain: D: cc-hex-n24; crystal structure of a parallel 6-helix coiled coil cc-hex-n24
c4oh1A_ oxidoreductase Chain: A: l-iditol 2-dehydrogenase; crystal structure of a putative zinc-binding dehydrogenase (gutb) from2 clostridium scindens atcc 35704 at 2.00 a resolution
c4kcaA_ hydrolase Chain: A: endo-1,5-alpha-l-arabinanase; crystal structure of endo-1,5-alpha-l-arabinanase from a bovine2 ruminal metagenomic library
c4knhB_ transport protein Chain: B: nup192p; structure of the chaetomium thermophilum adaptor nucleoporin nup192 n-2 terminal domain
c3j60M_ ribosome Chain: M: 40s ribosomal protein s12e; localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
c4jlvA_ transferase Chain: A: c-terminal fragment of membrane protein capa1, putative crystal structure of the chimerical protein capa1b1 in complex with2 adp-mg
c4i05A_ hydrolase Chain: A: cathepsin b-like peptidase (c01 family); structure of intermediate processing form of cathepsin b1 from2 schistosoma mansoni
c4h8lF_ de novo protein Chain: F: cc-hex-d24-a5/7c; crystal structure of a parallel 6-helix coiled coil cc-hex-d24-a5/7c
c4h8oF_ de novo protein Chain: F: cc-hex-n24; crystal structure of a parallel 6-helix coiled coil cc-hex-n24
c4cgsB_ transcription Chain: B: polymerase subunit pa; crystal structure of the n-terminal domain of the pa2 subunit of dhori virus polymerase
c4g80I_ membrane protein Chain: I: voltage-sensor containing phosphatase; crystal structure of voltage sensing domain of ci-vsp with fragment2 antibody (wt, 3.8 a)
c4meaA_ hydrolase Chain: A: predicted protein; crystal structure of the cif epoxide hydrolase from acinetobacter2 nosocomialis
c4h8lB_ de novo protein Chain: B: cc-hex-d24-a5/7c; crystal structure of a parallel 6-helix coiled coil cc-hex-d24-a5/7c
c3j60G_ ribosome Chain: G: 40s ribosomal protein s6; localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
c3wdfA_ hydrolase Chain: A: uracil-dna glycosylase; staphylococcus aureus udg
c4h8gB_ de novo protein Chain: B: cc-hex-il-22; crystal structure of a parallel 6-helix coiled coil cc-hex-il- 22
c4i04C_ hydrolase Chain: C: cathepsin b-like peptidase (c01 family); structure of zymogen of cathepsin b1 from schistosoma mansoni
c4h8gD_ de novo protein Chain: D: cc-hex-il-22; crystal structure of a parallel 6-helix coiled coil cc-hex-il- 22
c4h8fB_ de novo protein Chain: B: cc-hex-ii-phi22; crystal structure of a parallel 4-helix coiled coil cc-hex-ii- 22
c4h8oC_ de novo protein Chain: C: cc-hex-n24; crystal structure of a parallel 6-helix coiled coil cc-hex-n24
c4o79A_ oxidoreductase Chain: A: probable transmembrane ascorbate ferrireductase 2; crystal structure of ascorbate-bound cytochrome b561, crystal soaked2 in 1 m l-ascorbate for 10 minutes
c4bklF_ immune system Chain: F: j1 epitope; crystal structure of the arthritogenic antibody m2139 (fab2 fragment) in complex with the triple-helical j1 peptide
c3j61b_ ribosome Chain: B: 60s ribosomal protein l3; localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
c4l6vk_ electron transport Chain: K: photosystem i reaction center subunit viii; crystal structure of a virus like photosystem i from the2 cyanobacterium synechocystis pcc 6803
c4h8oE_ de novo protein Chain: E: cc-hex-n24; crystal structure of a parallel 6-helix coiled coil cc-hex-n24
c4mr0B_ plasimin and fibronectin-binding protein Chain: B: plasmin and fibronectin-binding protein a; crystal structure of pfba, a surface adhesin of streptococcus2 pneumoniae
c3wnlA_ transferase Chain: A: cycloisomaltooligosaccharide glucanotransferase; d308a mutant of bacillus circulans t-3040 cycloisomaltooligosaccharide2 glucanotransferase complexed with isomaltohexaose
c4h8oB_ de novo protein Chain: B: cc-hex-n24; crystal structure of a parallel 6-helix coiled coil cc-hex-n24
c4mo7A_ transcription Chain: A: transcriptional regulator i2; crystal structure of superantigen pfit
c4l6vF_ electron transport Chain: F: fusion protein of photosystem i subunit iii and subunit ix; crystal structure of a virus like photosystem i from the2 cyanobacterium synechocystis pcc 6803
c4ovyA_ hydrolase Chain: A: haloacid dehalogenase domain protein hydrolase; crystal structure of haloacid dehalogenase domain protein hydrolase2 from planctomyces limnophilus dsm 3776
c4h8gA_ de novo protein Chain: A: cc-hex-il-22; crystal structure of a parallel 6-helix coiled coil cc-hex-il- 22


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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