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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Jan 25

Fold library idPDB HeaderMoleculeTitle
c4o94B_ transport protein Chain: B: trap dicarboxylate transporter dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 rhodopseudomonas palustris haa2 (rpb_3329), target efi-510223, with3 bound succinate
c4c0pD_ transport protein Chain: D: transportin-3; unliganded transportin 3
c4oenA_ transport protein Chain: A: second substrate binding domain of putative amino acid abc crystal structure of the second substrate binding domain of a putative2 amino acid abc transporter from streptococcus pneumoniae canada3 mdr_19a
c4n5cH_ protein binding Chain: H: cargo-transport protein ypp1; crystal structure of ypp1
c4o8mA_ transport protein Chain: A: trap dicarboxylate transporter, dctp subunit; crystal structure of a trap periplasmic solute binding protein2 actinobacillus succinogenes 130z, target efi-510004, with bound l-3 galactonate
c4n48A_ transferase/rna Chain: A: cap-specific mrna (nucleoside-2'-o-)-methyltransferase 1; cap-specific mrna (nucleoside-2'-o-)-methyltransferase 1 protein in2 complex with capped rna fragment
c4n13A_ transport protein Chain: A: phosphate abc transporter, periplasmic phosphate-binding crystal structure of psts (bb_0215) from borrelia burgdorferi
c4c3bB_ viral protein Chain: B: matrix protein 2-1; hrsv m2-1, p21 crystal form
c4c9qB_ transport protein Chain: B: adp, atp carrier protein 3; structure of yeast mitochondrial adp/atp carrier isoform 32 inhibited by carboxyatractyloside (p21 crystal form)
c4j0bB_ chaperone Chain: B: tnf receptor-associated protein 1; structure of mitochondrial hsp90 (trap1) with adp-bef3
c3zifP_ virus Chain: P: pix; cryo-em structures of two intermediates provide insight2 into adenovirus assembly and disassembly
c2mcxA_ antimicrobial protein Chain: A: piscidin-3; solid-state nmr structure of piscidin 3 in aligned 1:12 phosphatidylethanolamine/phosphoglycerol lipid bilayers
c2lw5A_ viral protein Chain: A: entity; solution structure of anti-crispr protein acr30-35 from pseudomonas2 aeruginosa phage jbd30
c4ccyA_ hydrolase Chain: A: carboxylesterase ybfk; crystal structure of carboxylesterase cesb (ybfk) from2 bacillus subtilis
c4iedB_ hydrolase Chain: B: class d beta-lactamase; crystal structure of fus-1 (oxa-85), a class d beta-lactamase from2 fusobacterium nucleatum subsp. polymorphum
c3w43A_ hydrolase Chain: A: phosphoserine phosphatase rsbx; crystal structure of rsbx in complex with manganese in space group p21
c3zifD_ virus Chain: D: hexon protein; cryo-em structures of two intermediates provide insight2 into adenovirus assembly and disassembly
c3w53A_ hydrolase Chain: A: beta-glucosidase; crystal structure of psychrophilic beta-glucosidase bglu from2 micrococcus antarcticus
c4o2hB_ structural genomics, unknown function Chain: B: protein bcam1869; crystal structure of bcam1869 protein (rsam homolog) from burkholderia2 cenocepacia
c4o2dB_ ligase Chain: B: aspartate--trna ligase; crystal structure of aspartyl-trna synthetase from mycobacterium2 smegmatis with bound aspartic acid
c4ce7B_ hydrolase Chain: B: unsaturated 3s-rhamnoglycuronyl hydrolase; crystal structure of a novel unsaturated beta-glucuronyl2 hydrolase enzyme, belonging to family gh105, involved in3 ulvan degradation
c4hicA_ unknown function Chain: A: trak; crystal structure of the potential transfer protein trak from gram-2 positive conjugative plasmid pip501
c4cj7B_ structural protein Chain: B: actin/actin family protein; structure of crenactin, an archeal actin-like protein
c2m7zA_ membrane protein Chain: A: cd63-like protein sm-tsp-2; smtsp2ec2
c4n6rA_ dna binding protein/transcription Chain: A: vosa; crystal structure of vosa-velb-complex
c2mcwA_ antimicrobial protein Chain: A: piscidin-3; solid-state nmr structure of piscidin 3 in aligned 3:12 phosphatidylcholine/phosphoglycerol lipid bilayers
c4o9dA_ gene regulation Chain: A: rik1-associated factor 1; structure of dos1 propeller
c2mjkA_ antimicrobial protein Chain: A: gallin protein; nmr structure of hen egg beta-defensin gallin (chicken ovo-defensin)
c4n5aA_ protein binding Chain: A: protein efr3; crystal structure of efr3
c4o9kB_ isomerase Chain: B: arabinose 5-phosphate isomerase; crystal structure of the cbs pair of a putative d-arabinose 5-2 phosphate isomerase from methylococcus capsulatus in complex with3 cmp-kdo
c2mcuA_ antimicrobial protein Chain: A: moronecidin; solid-state nmr structure of piscidin 1 in aligned 3:12 phosphatidylcholine/phosphoglycerol lipid bilayers
c4ovrA_ solute-binding protein Chain: A: trap dicarboxylate transporter, dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 xanthobacter autotrophicus py2, target efi-510329, with bound beta-d-3 galacturonate
c4oanB_ membrane protein/protein transport Chain: B: trap dicarboxylate transporter dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 rhodopseudomonas palustris haa2 (rpb_2686), target efi-510221, with3 density modeled as (s)-2-hydroxy-2-methyl-3-oxobutanoate ((s)-2-4 acetolactate)
c4nj5A_ metal binding protein Chain: A: probable histone-lysine n-methyltransferase, h3 lysine-9 crystal structure of suvh9
c4lejA_ allergen, plant protein Chain: A: vicilin; crystal structure of the korean pine (pinus koraiensis) vicilin
c4c9yB_ cell cycle Chain: B: spindle and kinetochore-associated protein 1; structural basis for the microtubule binding of the human2 kinetochore ska complex
c4n6rB_ dna binding protein/transcription Chain: B: velb; crystal structure of vosa-velb-complex
c2mcvA_ antimicrobial protein Chain: A: moronecidin; solid-state nmr structure of piscidin 1 in aligned 1:12 phosphatidylethanolamine/phosphoglycerol lipid bilayers
c4cayC_ transcription Chain: C: acidic leucine-rich nuclear phosphoprotein 32 family crystal structure of a human anp32e-h2a.z-h2b complex
c4ipeA_ chaperone Chain: A: tnf receptor-associated protein 1; crystal structure of mitochondrial hsp90 (trap1) with amppnp
c4o2zA_ transferase Chain: A: mitogen-activated protein kinase 3, putative; crystal structure of mpk3 from leishmania donovani, ldbpk_100540 in2 the presence of nvp-bbt594
c4n6qA_ dna binding protein Chain: A: vosa; crystal structure of vosa velvet domain
c3zifR_ virus Chain: R: pviii; cryo-em structures of two intermediates provide insight2 into adenovirus assembly and disassembly
c2m87A_ signaling protein Chain: A: transcriptional regulatory protein basr/pmra; structural basis of dna recognition by the effector domain of2 klebsiella pneumoniae pmra
c4ovqA_ solute-binding protein Chain: A: trap dicarboxylate abc transporter, substrate-binding crystal structure of a trap periplasmic solute binding protein from2 roseobacter denitrificans, target efi-510230, with bound beta-d-3 glucuronate
c3zifM_ virus Chain: M: penton protein; cryo-em structures of two intermediates provide insight2 into adenovirus assembly and disassembly


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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