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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Jan 18

Fold library idPDB HeaderMoleculeTitle
c3wmdA_ isomerase Chain: A: probable monensin biosynthesis isomerase; crystal structure of epoxide hydrolase monbi
c4oa8A_ transferase Chain: A: o-methyltransferase family protein; x-ray crystal structure of o-methyltransferase from anaplasma2 phagocytophilum in apo form
c4ipuA_ cell adhesion Chain: A: fimu protein; crystal structure of pseudomonas aeruginosa (strain: pao1) type iv2 minor pilin fimu in space group p21
c4o92A_ transferase Chain: A: glutathione s-transferase; crystal structure of a glutathione s-transferase from pichia2 kudriavzevii (issatchenkia orientalis), target efi-501747
c4j7aB_ hydrolase Chain: B: esterase; crystal structure of est25 - a bacterial homolog of hormone-sensitive2 lipase from a metagenomic library
c4im4F_ hydrolase Chain: F: endoglucanase e; multifunctional cellulase, xylanase, mannanase
c4kpuB_ electron transport Chain: B: electron transfer flavoprotein alpha/beta-subunit; electron transferring flavoprotein of acidaminococcus fermentans:2 towards a mechanism of flavin-based electron bifurcation
c4chwB_ transport protein Chain: B: cyclic nucleotide-gated potassium channel mll3241; the electron crystallography structure of the camp-free2 potassium channel mlok1
c4necC_ transferase/antibiotic Chain: C: putative sam-dependent methyltransferase; conversion of a disulfide bond to a thioacetal group during2 echinomycin biosynthesis
c4bhyB_ isomerase Chain: B: alanine racemase; structure of alanine racemase from aeromonas hydrophila
c4o8kB_ transferase Chain: B: type iii pantothenate kinase; crystal structure of type iii pantothenate kinase from burkholderia2 thailandensis, apo structure
c4l9cA_ protein binding Chain: A: f-box only protein 7; crystal structure of the fp domain of human f-box protein fbxo72 (native)
c4l1fB_ electron transport Chain: B: acyl-coa dehydrogenase domain protein; electron transferring flavoprotein of acidaminococcus fermentans:2 towards a mechanism of flavin-based electron bifurcation
c4lgiD_ hydrolase Chain: D: uncharacterized protein; n-terminal truncated nlec structure
c2makB_ signaling protein/transport protein Chain: B: calcium release-activated calcium channel protein 1; solution structure of the stim1 cc1-cc2 homodimer in complex with two2 orai1 c-terminal domains.
c2majC_ signaling protein Chain: C: stromal interaction molecule 1; solution structure of the stim1 cc1-cc2 homodimer.
c4m4jA_ hormone Chain: A: insulin; radiation damage study of cu t6-insulin - 0.30 mgy
c4m4lC_ hormone Chain: C: insulin; the structure of cu t6 bovine insulin
c4m4jC_ hormone Chain: C: insulin; radiation damage study of cu t6-insulin - 0.30 mgy
c4bm2A_ oxidoreductase Chain: A: manganese peroxidase 4; crystal structure of manganese peroxidase 4 from pleurotus2 ostreatus - crystal form ii
c4irvG_ protein binding Chain: G: apoptosis-stimulating of p53 protein 2; structure of the helicobacter pylori caga oncogene bound to the human2 tumor suppressor apoptosis-stimulating protein of p53-2
c4cjyD_ transferase Chain: D: cyclin-dependent kinase 12; crystal structure of the human cdk12-cyclink complex
c4m4iA_ hormone Chain: A: insulin; radiation damage study of cu t6-insulin - 0.12 mgy
c2m35A_ toxin Chain: A: k-ssm1a; nmr study of k-ssm1a
c4m64D_ transport protein Chain: D: melibiose carrier protein; 3d crystal structure of na+/melibiose symporter of salmonella2 typhimurium
c4ineB_ transferase Chain: B: protein pmt-2; crystal structure of n-methyl transferase (pmt-2) from caenorhabditis2 elegant complexed with s-adenosyl homocysteine and3 phosphoethanolamine
c4la3B_ lyase Chain: B: dimethylsulphoniopropionate (dmsp) lyase dddq; crystal structure of dimethylsulphoniopropionate (dmsp) lyase dddq2 y131a in complex with dmsp
c3zphA_ isomerase Chain: A: chalcone isomerase; bacterial chalcone isomerase in closed conformation from2 eubacterium ramulus at 2.8 a resolution
c3zmrA_ hydrolase Chain: A: cellulase (glycosyl hydrolase family 5); bacteroides ovatus gh5 xyloglucanase in complex with a xxxg2 heptasaccharide
c4m4iC_ hormone Chain: C: insulin; radiation damage study of cu t6-insulin - 0.12 mgy
c2m1wA_ immune system Chain: A: tir domain-containing adapter molecule 2; ticam-2 tir domain
c4nnzB_ hydrolase Chain: B: probable zinc protease; subunit pa0372 of heterodimeric zinc protease pa0371-pa0372
c4nnqB_ lyase Chain: B: putative enoyl-coa hydratase; crystal structure of lnmf protein from streptomyces amphibiosporus
c4n2zA_ hydrolase Chain: A: gh62 arabinofuranosidase; crystal structure of the alpha-l-arabinofuranosidase paabf62a from2 podospora anserina in complex with cellotriose
c2mbdA_ antimicrobial protein Chain: A: lasiocepsin; lasiocepsin
c4l2iA_ electron transport Chain: A: electron transfer flavoprotein alpha subunit; electron transferring flavoprotein of acidaminococcus fermentans:2 towards a mechanism of flavin-based electron bifurcation
c4bn2A_ motor protein Chain: A: kinesin-like protein kif15; kinesin
c4o96D_ hydrolase Chain: D: type iii effector protein kinase; 2.60 angstrom resolution crystal structure of a protein kinase domain2 of type iii effector nleh2 (ecs1814) from escherichia coli o157:h73 str. sakai
c4iukB_ nitrate-binding protein Chain: B: nrea protein; crystal structure of nrea of staphylococcus carnosus with bound2 nitrate
c4lgjA_ hydrolase Chain: A: uncharacterized protein; crystal structure and mechanism of a type iii secretion protease
c4naoA_ oxidoreductase Chain: A: putative oxygenase; crystal structure of eash
c4hizA_ hydrolase,viral protein Chain: A: endosialidase; phage phi92 endosialidase
c4m4hA_ hormone Chain: A: insulin; radiation damage study of cu t6-insulin - 0.06 mgy
c2miuA_ protein binding Chain: A: four and a half lim domains protein 2; structure of fhl2 lim adaptor and its interaction with ski
c4beqA_ isomerase Chain: A: alanine racemase 2; structure of vibrio cholerae broad spectrum racemase double2 mutant r173a, n174a
c4irvF_ protein binding Chain: F: apoptosis-stimulating of p53 protein 2; structure of the helicobacter pylori caga oncogene bound to the human2 tumor suppressor apoptosis-stimulating protein of p53-2
c4nk8A_ isomerase Chain: A: poly(beta-d-mannuronate) c5 epimerase; crystal structure of the periplasmic alginate epimerase algg d317a2 mutant
c4n2rA_ hydrolase Chain: A: alpha-l-arabinofuranosidase umabf62a; crystal structure of the alpha-l-arabinofuranosidase umabf62a from2 ustilago maydis in complex with l-arabinofuranose
c4o2wD_ ligase Chain: D: e3 ubiquitin-protein ligase herc1; crystal structure of the third rcc1-like domain of herc1
c4bf5A_ isomerase Chain: A: alanine racemase; structure of broad spectrum racemase from aeromonas hydrophila
c4m4mA_ hormone Chain: A: insulin; the structure of ni t6 bovine insulin
c4o6vC_ oxidoreductase Chain: C: oxidoreductase, short-chain dehydrogenase/reductase family; crystal structure of a 3-oxoacyl-[acyl-carrier protein] reductase (ec2 1.1.1.100) from brucella suis
c4nj4A_ oxidoreductase/oxidoreductase inhibitor Chain: A: rna demethylase alkbh5; crystal structure of human alkbh5
c4n06A_ hydrolase Chain: A: crispr-associated endonuclease cas1 1; crystal structure of cas1 from archaeoglobus fulgidus and its2 nucleolytic activity
c4m4mC_ hormone Chain: C: insulin; the structure of ni t6 bovine insulin
c3w6uA_ oxidoreductase Chain: A: 6-phosphogluconate dehydrogenase, nad-binding protein; crystal structure of nadp bound l-serine 3-dehydrogenase from2 hyperthermophilic archaeon pyrobaculum calidifontis
c4km3B_ hydrolase Chain: B: methionine aminopeptidase; discovery of a novel structural motif in methionine aminopeptidase2 from streptococci with possible post-translational modification
c4nzkA_ structural genomics, unknown function Chain: A: uncharacterized protein; crystal structure of a hypothetical protein (eubsir_00411) from2 eubacterium siraeum dsm 15702 at 1.49 a resolution
c4m4lA_ hormone Chain: A: insulin; the structure of cu t6 bovine insulin
c4nzpA_ ligase Chain: A: argininosuccinate synthase; the crystal structure of argininosuccinate synthase from campylobacter2 jejuni subsp. jejuni nctc 11168
c2m1xA_ immune system Chain: A: tir domain-containing adapter molecule 1; ticam-1 tir domain structure
c4o29A_ transferase Chain: A: protein-l-isoaspartate o-methyltransferase; protein-l-isoaspartate o-methyltransferase from pyrobaculum aerophilum2 in complex with s-adenosyl-l-homocysteine
c2mduA_ isomerase Chain: A: pin1 ww domain; circular permutant of the ww domain with loop 1 excised
c4k51A_ biosynthetic protein Chain: A: eukaryotic translation initiation factor 3 subunit a; crystal structure of the pci domain of eif3a
c2makD_ signaling protein/transport protein Chain: D: calcium release-activated calcium channel protein 1; solution structure of the stim1 cc1-cc2 homodimer in complex with two2 orai1 c-terminal domains.
c4iyrB_ hydrolase Chain: B: caspase-6; crystal structure of full-length caspase-6 zymogen
c4irvH_ protein binding Chain: H: apoptosis-stimulating of p53 protein 2; structure of the helicobacter pylori caga oncogene bound to the human2 tumor suppressor apoptosis-stimulating protein of p53-2
c4m4hC_ hormone Chain: C: insulin; radiation damage study of cu t6-insulin - 0.06 mgy
c4bmhA_ transferase Chain: A: acetyltransferase; crystal structure of sshat
c4irvE_ protein binding Chain: E: apoptosis-stimulating of p53 protein 2; structure of the helicobacter pylori caga oncogene bound to the human2 tumor suppressor apoptosis-stimulating protein of p53-2
c4o5aA_ transcription regulator Chain: A: laci family transcription regulator; the crystal structure of a laci family transcriptional regulator from2 bifidobacterium animalis subsp. lactis dsm 10140
c3zbeA_ toxin-antitoxin Chain: A: paaa2; e. coli o157 pare2-associated antitoxin 2 (paaa2)
c4kh3A_ immune system Chain: A: antigen 43; structure of a bacterial self-associating protein
c4m4fA_ hormone Chain: A: insulin; radiation damage study of cu t6-insulin - 0.01 mgy
c2mj3A_ metal binding protein Chain: A: iron-sulfur cluster binding protein; backbone 1h, 13c, and 15n chemical shift assignments and structure of2 iron-sulfur cluster binding protein from ehrlichia chaffeensis
c4m4fC_ hormone Chain: C: insulin; radiation damage study of cu t6-insulin - 0.01 mgy


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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