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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Jan 11

Fold library idPDB HeaderMoleculeTitle
c4ce4S_ ribosome Chain: S: mrpl18; 39s large subunit of the porcine mitochondrial ribosome
c4mctD_ toxin Chain: D: killer protein; p. vulgaris higba structure, crystal form 1
c2mfaA_ toxin Chain: A: mambalgin-2; mambalgin-2
c2mcdA_ hydrolase Chain: A: murine norovirus 1; backbone 1h, 13c, and 15n chemical shift assignments for murine2 norovirus ns1/2 d94e mutant
c3wbrC_ carbohydrate binding protein Chain: C: c-type lectin domain family 4 member c; crystal structure of carbohydrate recognition domain of blood2 dendritic cell antigen-2 (bdca2) lectin (crystal form-3)
c3wkgA_ isomerase Chain: A: cellobiose 2-epimerase; crystal structure of cellobiose 2-epimerase in complex with2 glucosylmannose
c4iguB_ signaling protein Chain: B: cg5036; crystal structure of the rgs domain of cg5036
c3j4uJ_ virus Chain: J: cementing protein; a new topology of the hk97-like fold revealed in bordetella2 bacteriophage: non-covalent chainmail secured by jellyrolls
c4n9f1_ ligase/viral protein Chain: 1: virion infectivity factor; PDB Fragment:unp residues 1-176;
c2m1mA_ transcription Chain: A: auxin-induced protein iaa4; solution structure of the dimerization domain of aux/iaa transcription2 factor ps-iaa4 from pea (pisum sativum)
c2mdaB_ oxidoreductase Chain: B: tyrosine 3-monooxygenase; the solution structure of the regulatory domain of tyrosine2 hydroxylase
c3wfoB_ transferase Chain: B: poly a polymerase; trna processing enzyme (apo form 1)
c4lp7C_ calcium binding protein Chain: C: matrix protein m; crystal structure of the human metapneumovirus matrix protein
c2rt4A_ de novo protein Chain: A: af.2a1; nmr structure of designed protein, af.2a1, (ensembles)
c4ml1D_ isomerase Chain: D: dsbp; disulfide isomerase (dsbp) from multidrug resistance inca/c2 transferable plasmid in oxidized state (p212121 space group)
c3wbzD_ transferase Chain: D: likely histidyl trna-specific guanylyltransferase; crystal structure of c. albicans trna(his) guanylyltransferase (thg1)2 with atp
c4hboD_ viral protein Chain: D: capsid protein; crystal structure of rubella virus capsid protein (residues 127-277)
c4ld7N_ transferase Chain: N: dimethylallyl tryptophan synthase; crystal structure of anapt from neosartorya fischeri
c4iqhB_ membrane protein Chain: B: dysferlin; crystal structure analysis of dysferlin c2a variant 1 (c2av1)
c4ljkA_ dna binding protein Chain: A: dna processing chain a (dpra); structural insights into the unique single-stranded dna binding mode2 of dna processing protein a from helicobacter pylori
c4ms3A_ signaling protein/agonist Chain: A: gamma-aminobutyric acid type b receptor subunit 1; crystal structure of the extracellular domain of human gaba(b)2 receptor bound to the endogenous agonist gaba
c4lngA_ transferase Chain: A: caax farnesyltransferase alpha subunit ram2; aspergillus fumigatus protein farnesyltransferase complex with2 farnesyldiphosphate and tipifarnib
c4hkhA_ protein binding Chain: A: putative type vi secretion protein; structure of the hcp1 protein from e. coli eaec 042 pathovar, mutants2 n93w-s158w
c4ng2E_ transcription regulator Chain: E: uncharacterized protein; crystal structure of lasr lbd-qsla complex from pseudomonas aeruginosa
c4mngE_ immune system Chain: E: tra@ protein, ti antigen cd3-associated protein gamma chain structure of the dp10.7 tcr with cd1d-sulfatide
c4nvsB_ unknown function Chain: B: putative enzyme, glyoxalase family; crystal structure of the q18cp6_clod6 protein from glyoxalase family.2 northeast structural genomics consortium target cfr3
c4c0mD_ immune system Chain: D: tir domain-containing adapter molecule 1; crystal structure of the n terminal domain of wild type trif2 (tir-domain-containing adapter-inducing interferon-beta)
c4nxtB_ transferase Chain: B: mitochondrial dynamic protein mid51; crystal structure of the cytosolic domain of human mid51
c4jpnD_ viral protein Chain: D: minor spike protein h; bacteriophage phix174 h protein residues 143-221
c4o0nA_ transferase Chain: A: nucleoside diphosphate kinase; 2.4 angstrom resolution crystal structure of putative nucleoside2 diphosphate kinase from toxoplasma gondii.
c4migC_ oxidoreductase Chain: C: pyranose 2-oxidase; pyranose 2-oxidase from phanerochaete chrysosporium, recombinant wild2 type
c4ce4V_ ribosome Chain: V: mrpl21; 39s large subunit of the porcine mitochondrial ribosome
c4ovkA_ solute-binding protein Chain: A: periplasmic binding protein; crystal structure of periplasmic solute binding protein from2 veillonella parvula dsm 2008
c4nsnC_ transferase Chain: C: purine nucleoside phosphorylase; crystal structure of purine nucleoside phosphorylase from2 porphyromonas gingivalis atcc 33277, nysgrc target 030972,3 orthorhombic symmetry
c4cffB_ transferase Chain: B: 5'-amp-activated protein kinase subunit beta-1; structure of full length human ampk in complex with a small2 molecule activator, a thienopyridone derivative (a-769662)
c3j4uA_ virus Chain: A: major capsid protein; a new topology of the hk97-like fold revealed in bordetella2 bacteriophage: non-covalent chainmail secured by jellyrolls
c4n83F_ oxidoreductase Chain: F: ribonucleoside-diphosphate reductase subunit beta; x-ray crystal structure of streptococcus sanguinis dimanganese(ii)-2 nrdf
c4nvrC_ transferase Chain: C: putative acyltransferase; 2.22 angstrom resolution crystal structure of a putative2 acyltransferase from salmonella enterica
c2m1tA_ lipid binding protein Chain: A: pulmonary surfactant-associated protein b; sp-b c-terminal (residues 59-80) peptide in dpc micelles
c4ig4A_ hydrolase Chain: A: thermostable nppase; crystal structure of single mutant thermostable nppase (n86s) from2 geobacillus stearothermophilus
c4nrdA_ structural genomics, unknown function Chain: A: uncharacterized protein; crystal structure of a hypothetical protein (bacova_04955) from2 bacteroides ovatus atcc 8483 at 2.10 a resolution
c4ij2E_ oxygen transport/protein binding Chain: E: iron-regulated surface determinant protein h; human methemoglobin in complex with the second and third neat domains2 of isdh from staphylococcus aureus
c3wfqG_ transferase/rna Chain: G: poly a polymerase; trna processing enzyme complex 1
c4bowB_ hydrolase Chain: B: endo-1,3-beta-glucanase, family gh16; crystal structure of lama_e269s from z. galactanivorans in2 complex with laminaritriose and laminaritetraose
c4c22B_ isomerase Chain: B: l-fucose isomerase; l-fucose isomerase in complex with fuculose
c4nv1D_ transferase Chain: D: formyltransferase; crystal structure of a 4-n formyltransferase from francisella2 tularensis
c4nq1B_ lyase Chain: B: 4-hydroxy-tetrahydrodipicolinate synthase; legionella pneumophila dihydrodipicolinate synthase with first2 substrate pyruvate bound in the active site
c4ovmE_ unknown function Chain: E: uncharacterized protein sgcj; crystal structure of sgcj protein from streptomyces carzinostaticus
c4nl8E_ dna binding protein Chain: E: primosome assembly protein pria; pria helicase bound to ssb c-terminal tail peptide
c4c82A_ lyase Chain: A: 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase; ispf (plasmodium falciparum) unliganded structure
c4njkA_ lyase Chain: A: 7-carboxy-7-deazaguanine synthase; crystal structure of quee from burkholderia multivorans in complex2 with adomet, 7-carboxy-7-deazaguanine, and mg2+
c4nyrA_ lipid binding protein Chain: A: milk protein; in-vivo crystallisation (midguts of a viviparous cockroach) and2 structure at 2.5 a resolution of a glycosylated, lipid-binding,3 lipocalin-like protein
c4mx8C_ solute-binding protein Chain: C: periplasmic binding protein; crystal structure of troa-like periplasmic binding protein2 peripla_bp_2 from xylanimonas cellulosilytica
c4ixjB_ cell adhesion Chain: B: fimbrial protein (pilin); the structure of pilj, a type iv pilin from clostridium difficile
c4ovtA_ solute-binding protein Chain: A: trap dicarboxylate transporter, dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 ochrobacterium anthropi (oant_3902), target efi-510153, with bound l-3 fuconate
c4mptA_ transport protein Chain: A: putative leu/ile/val-binding protein; crystal structure of periplasmic binding protein type 1 from2 bordetella pertussis tohama i
c4ce4h_ ribosome Chain: H: 39s large subunit of the porcine mitochondrial ribosome
c4nmuB_ oxidoreductase Chain: B: thiol-disulfide oxidoreductase resa; crystal structure of thiol-disulfide oxidoreductase from bacillus str.2 'ames ancestor'
c4bedD_ oxygen transport Chain: D: hemocyanin klh1; keyhole limpet hemocyanin (klh): 9a cryoem structure and2 molecular model of the klh1 didecamer reveal the interfaces3 and intricate topology of the 160 functional units
c4m7fB_ sugar binding protein Chain: B: fibrinogen c domain-containing protein 1; crystal structure of tetrameric fibrinogen-like recognition domain of2 fibcd1 with bound mannac
c4n0oC_ hydrolase/dna Chain: C: replicase polyprotein 1ab; complex structure of arterivirus nonstructural protein 10 (helicase)2 with dna
c4mbgB_ transferase Chain: B: caax farnesyltransferase beta subunit ram1; crystal structure of aspergillus fumigatus protein farnesyltransferase2 binary complex with farnesyldiphosphate
c4n0wA_ transferase Chain: A: serine hydroxymethyltransferase; x-ray crystal structure of a serine hydroxymethyltransferase from2 burkholderia cenocepacia with covalently attached pyridoxal phosphate
c4mcxE_ toxin Chain: E: antidote protein; p. vulgaris higba structure, crystal form 2
c4nkhA_ ligase Chain: A: e3 ubiquitin-protein ligase ssph1; crystal structure of ssph1 lrr domain
c4l36B_ oxidoreductase Chain: B: putative p450-like protein; crystal structure of the cytochrome p450 enzyme txte
c4nu7C_ isomerase Chain: C: ribulose-phosphate 3-epimerase; 2.05 angstrom crystal structure of ribulose-phosphate 3-epimerase from2 toxoplasma gondii.
c3zgiB_ structural protein Chain: B: cell wall surface anchor family protein; crystal structure of the krt10-binding region domain of the2 pneumococcal serine rich repeat protein psrp
c4inpA_ transport protein Chain: A: iron (iii) abc transporter, periplasmic iron-binding the crystal structure of helicobacter pylori ceue (hp1561) with ni(ii)2 bound
c4iloA_ unknown function Chain: A: ct398; 2.12a resolution structure of ct398 from chlamydia trachomatis
c4idmA_ oxidoreductase Chain: A: delta-1-pyrroline-5-carboxylate dehydrogenase; crystal structure of the delta-pyrroline-5-carboxylate dehydrogenase2 from mycobacterium tuberculosis
c4n2pC_ chaperone Chain: C: protein archease; structure of archease from pyrococcus horikoshii
c4o7hA_ transferase Chain: A: glutathione s-transferase; crystal structure of a glutathione s-transferase from rhodospirillum2 rubrum f11, target efi-507460
c4ln9A_ lyase Chain: A: rifamycin polyketide synthase; crystal structure of the dehydratase domain from the terminal module2 of the rifamycin polyketide synthase
c4ni3B_ hydrolase Chain: B: alpha-fucosidase gh29; crystal structure of gh29 family alpha-l-fucosidase from fusarium2 graminearum in the closed form
c2mgvA_ penicillin binding protein Chain: A: bifunctional membrane-associated penicillin-binding protein nmr structure of pasta domain of pona2 from mycobacterium tuberculosis
c4ndgB_ dna binding protein/rna/dna Chain: B: aprataxin; human aprataxin (aptx) bound to rna-dna and zn - adenosine vanadate2 transition state mimic complex
c4nkpD_ chaperone Chain: D: putative extracellular heme-binding protein; crystal structure of a hypothetical protein (despig_02683) from2 desulfovibrio piger atcc 29098 at 1.24 a resolution
c4mvcA_ transferase Chain: A: choline-phosphate cytidylyltransferase a; crystal structure of a mammalian cytidylyltransferase
c4nqrA_ transport protein Chain: A: amino acid/amide abc transporter substrate-binding protein, the crystal structure of a solute-binding protein (n280d mutant) from2 anabaena variabilis atcc 29413 in complex with alanine
c4limA_ transferase Chain: A: dna primase small subunit; crystal structure of the catalytic subunit of yeast primase
c4ce4l_ ribosome Chain: L: 39s large subunit of the porcine mitochondrial ribosome
c3w36A_ oxidoreductase Chain: A: naph1; crystal structure of holo-type bacterial vanadium-dependent2 chloroperoxidase
c4n3cB_ transferase/substrate Chain: B: host cell factor 1; crystal structure of human o-glcnac transferase bound to a peptide2 from hcf-1 pro-repeat2(1-26) and udp-glcnac
c4mo2A_ isomerase Chain: A: udp-galactopyranose mutase; crystal structure of udp-n-acetylgalactopyranose mutase from2 campylobacter jejuni
c4lqyA_ hydrolase Chain: A: bis(5'-adenosyl)-triphosphatase enpp4; crystal structure of human enpp4 with amp
c4if2A_ hydrolase Chain: A: phosphotriesterase homology protein; structure of the phosphotriesterase from mycobacterium tuberculosis
c2mhgA_ structural genomics, unknown function Chain: A: uncharacterized protein; nmr structure of protein np_254181.1 from pseudomonas aeruginosa pa01
c4o5oA_ oxidoreductase Chain: A: 3-hydroxyacyl-coa dehydrogenase; x-ray crystal structure of a 3-hydroxyacyl-coa dehydrogenase from2 brucella suis
c4c24A_ lyase Chain: A: l-fuculose phosphate aldolase; l-fuculose 1-phosphate aldolase
c4npbA_ isomerase Chain: A: protein disulfide isomerase ii; the crystal structure of thiol:disulfide interchange protein dsbc from2 yersinia pestis co92
c4nvtD_ isomerase Chain: D: triosephosphate isomerase; crystal structure of triosephosphate isomerase from brucella2 melitensis
c4n4jA_ oxidoreductase Chain: A: hydroxylamine oxidoreductase; kuenenia stuttgartiensis hydroxylamine oxidoreductase
c4br6B_ oxidoreductase Chain: B: superoxide dismutase; crystal structure of chaetomium thermophilum mnsod
c3whiA_ hydrolase Chain: A: subtilisin e; crystal structure of unautoprocessed form of is1-inserted pro-2 subtilisin e
c4c6mA_ hydrolase Chain: A: cad protein; crystal structure of the dihydroorotase domain of human cad2 bound to the inhibitor fluoroorotate at ph 7.0
c3j5u5_ translation Chain: 5: 50s ribosomal protein l34; structure of the ribosome with elongation factor g trapped in the pre-2 translocation state (pre-translocation 70s*trna structure, 50s3 subunit)
c3wfsC_ transferase/rna Chain: C: poly a polymerase; trna processing enzyme complex 3
c4ihkA_ cell adhesion Chain: A: collagen alpha3(vi); crystal structure of the collagen vi alpha3 n5 domain r1061q
c3wfpB_ transferase Chain: B: poly a polymerase; trna processing enzyme (apo form 2)
c4nbzB_ immune system Chain: B: a26.8 vhh; crystal structure of tcda-a1 bound to a26.8 vhh
c4nsmA_ structural protein Chain: A: collagen-like protein sclb; crystal structure of the streptococcal collagen-like protein 22 globular domain from invasive m3-type group a streptococcus
c4l0oA_ lyase Chain: A: cystathionine gamma-synthase; structure determination of cystathionine gamma-synthase from2 helicobacter pylori
c4n27D_ transferase Chain: D: bacterial transferase hexapeptide repeat; x-ray structure of brucella abortus rica
c4jppE_ viral protein Chain: E: minor spike protein h; bacteriophage phix174 h protein residues 143-282
c4nl4H_ dna binding protein Chain: H: primosome assembly protein pria; pria helicase bound to adp
c4cc9B_ protein binding Chain: B: protein vpx; crystal structure of human samhd1 (amino acid residues 582-2 626) bound to vpx isolated from sooty mangabey and human3 dcaf1 (amino acid residues 1058-1396)
c4nyhB_ hydrolase Chain: B: rna/rnp complex-1-interacting phosphatase; orthorhombic crystal form of pir1 dual specificity phosphatase core
c4mwfC_ immune system Chain: C: envelope glycoprotein e2; structure of hepatitis c virus envelope glycoprotein e2 core bound to2 broadly neutralizing antibody ar3c
c4lqkB_ viral protein Chain: B: protein a46; structure of the vaccinia virus nf- b antagonist a46
c4npcA_ oxidoreductase Chain: A: sorbitol dehydrogenase; crystal structure of an oxidoreductase, short-chain2 dehydrogenase/reductase family protein from brucella suis
c4fprC_ protein binding Chain: C: avirulence effector avrlm4-7; structure of a fungal protein
c4idiA_ protein binding Chain: A: oryza sativa rurm1-related; crystal structure of rurm1-related protein from plasmodium yoelii,2 py06420
c4id8A_ electron transport Chain: A: putative ferredoxin; the crystal structure of a [3fe-4s] ferredoxin associated with2 cyp194a4 from r. palustris haa2
c2mhwA_ antimicrobial protein, membrane protein Chain: A: antimicrobial peptide; the solution nmr structure of maximin-4 in sds micelles
c4nzjA_ hydrolase Chain: A: putative alpha-galactosidase; crystal structure of a putative alpha-galactosidase (bf1418) from2 bacteroides fragilis nctc 9343 at 1.57 a resolution
c4mz1A_ oxidoreductase/oxidoreductase inhibitor Chain: A: inosine-5'-monophosphate dehydrogenase; crystal structure of the inosine 5'-monophosphate dehydrogenase, with2 a internal deletion of cbs domain from campylobacter jejuni complexed3 with inhibitor compound p12
c3wfrG_ transferase/rna Chain: G: poly a polymerase; trna processing enzyme complex 2
c3zdfC_ oxidoreductase Chain: C: cp12 polypeptide; structure of gapdh with cp12 peptide from thermosynechococcus2 elongatus
c4ce4I_ ribosome Chain: I: mrpl9; 39s large subunit of the porcine mitochondrial ribosome
c4mubA_ transferase Chain: A: sulfotransferase; schistosoma mansoni (blood fluke) sulfotransferase/oxamniquine complex
c4n82B_ oxidoreductase Chain: B: ribonucleotide reductase; x-ray crystal structure of streptococcus sanguinis nrdiox
c2mh4A_ unknown function Chain: A: ligb-like protein; solution structure of the big domain from leptospira interrogans
c4nm6A_ oxidoreductase/dna Chain: A: methylcytosine dioxygenase tet2; crystal structure of tet2-dna complex
c2mioA_ structural genomics, unknown function Chain: A: rho gtpase-activating protein 10; solution nmr structure of sh3 domain 1 of rho gtpase-activating2 protein 10 from homo sapiens, northeast structural genomics3 consortium (nesg) target hr9129a
c3wn7B_ transcription Chain: B: peptide from nuclear factor erythroid 2-related factor 2; crystal structure of keap1 in complex with the n-terminal region of2 the nrf2 transcription factor
c4me3A_ replication Chain: A: dna replication licensing factor mcm related protein; 1.8 angstrom crystal structure of the n-terminal domain of an archaeal2 mcm
c4n6hA_ signaling protein Chain: A: soluble cytochrome b562, delta-type opioid receptor 1.8 a structure of the human delta opioid 7tm receptor
c4ljyA_ hydrolase Chain: A: pre-mrna-processing atp-dependent rna helicase prp5; crystal structure of rna splicing effector prp5 in complex with adp
c4c23A_ transferase Chain: A: l-fuculose kinase fuck; l-fuculose kinase
c4n7wA_ transport protein Chain: A: transporter, sodium/bile acid symporter family; crystal structure of the sodium bile acid symporter from yersinia2 frederiksenii
c3wkoA_ oxidoreductase Chain: A: nitrite reductase; copper-containing nitrite reductase from thermophilic bacterium2 geobacillus thermodenitrificans
c4n2oD_ structural protein Chain: D: autonomous cohesin; structure of a novel autonomous cohesin protein from ruminococcus2 flavefaciens
c2m9vA_ protein binding Chain: A: telomere replication protein est3; structure of saccharomyces cerevisiae est3 protein
c4ce43_ ribosome Chain: 3: mrpl30; 39s large subunit of the porcine mitochondrial ribosome
c4ccgY_ ligase Chain: Y: e3 ubiquitin-protein ligase fancl; structure of an e2-e3 complex
c4ce4b_ ribosome Chain: B: unassigned rna; 39s large subunit of the porcine mitochondrial ribosome
c3wklA_ hydrolase Chain: A: putative zinc metalloprotease aq_1964; the periplasmic pdz tandem fragment of the rsep homologue from aquifex2 aeolicus
c4cemA_ transcription Chain: A: regulator of nonsense transcripts 2; crystal structure of the first mif4g domain of human2 nonsense mediated decay factor upf2
c4ce4O_ ribosome Chain: O: mrpl14; 39s large subunit of the porcine mitochondrial ribosome
c3wfrF_ transferase/rna Chain: F: poly a polymerase; trna processing enzyme complex 2
c4mnhC_ immune system Chain: C: t-cell receptor gamma chain v region pt-gamma-1/2, human structure of the dp10.7 tcr
c4n01B_ transport protein Chain: B: periplasmic binding protein; the crystal structure of a periplasmic binding protein from2 veillonella parvula dsm 2008
c3wczA_ oxidoreductase Chain: A: aldo-keto reductase 2e; crystal structure of bombyx mori aldo-keto reductase (akr2e4) in2 complex with nadp
c4nfuB_ signaling protein Chain: B: senescence-associated carboxylesterase 101; structure of the central plant immunity signaling node eds1 in complex2 with its interaction partner sag101
c4ce49_ ribosome Chain: 9: mrpl36; 39s large subunit of the porcine mitochondrial ribosome
c4l7tA_ sialic acid-binding protein Chain: A: nanu sialic acid binding protein; b. fragilis nanu
c2m9uA_ viral protein Chain: A: integrase p46; solution nmr structure of the c-terminal domain (ctd) of moloney2 murine leukemia virus integrase, northeast structural genomics target3 or41a
c4cc9C_ protein binding Chain: C: deoxynucleoside triphosphate triphosphohydrolase samhd1; crystal structure of human samhd1 (amino acid residues 582-2 626) bound to vpx isolated from sooty mangabey and human3 dcaf1 (amino acid residues 1058-1396)
c3wfsD_ transferase/rna Chain: D: poly a polymerase; trna processing enzyme complex 3
c4ib3S_ transferase/peptide Chain: S: phosphorylated pseudo-substrate peptide psp20; structure of camp dependent protein kinase a in complex with adp,2 phosphorylated peptide psp20, and no metal
c4lpsA_ metal binding protein Chain: A: hydrogenase/urease nickel incorporation protein hypb; crystal structure of hypb from helicobacter pylori in complex with2 nickel
c4n04B_ oxidoreductase Chain: B: glyoxalase/bleomycin resistance protein/dioxygenase; the crystal structure of glyoxalase / bleomycin resistance protein2 from catenulispora acidiphila dsm 44928
c4nfuA_ signaling protein Chain: A: eds1; structure of the central plant immunity signaling node eds1 in complex2 with its interaction partner sag101
c4maiA_ oxidoreductase Chain: A: aa11 lytic polysaccharide monooxygenase; structure of aspergillus oryzae aa11 lytic polysaccharide2 monooxygenase with cu(i)
c4ilqA_ hydrolase Chain: A: ct771; 2.60a resolution structure of ct771 from chlamydia trachomatis
c4iwbA_ motor protein Chain: A: flic, flis chimera; novel fold of flic/flis fusion protein
c3w7bB_ hydrolase Chain: B: formyltetrahydrofolate deformylase; crystal structure of formyltetrahydrofolate deformylase from thermus2 thermophilus hb8
c4lgnA_ cellulose binding protein Chain: A: cellulose-binding, family ii; the structure of acidothermus cellulolyticus family 74 glycoside2 hydrolase
c4l1bB_ signaling protein/transferase/inhibitor Chain: B: phosphatidylinositol 3-kinase regulatory subunit alpha; crystal structure of p110alpha complexed with nish2 of p85alpha
c4nlmA_ structural genomics, unknown function Chain: A: lmo1340 protein; 1.18 angstrom resolution crystal structure of uncharacterized protein2 lmo1340 from listeria monocytogenes egd-e
c2m1uA_ contractile protein Chain: A: myosin light chain mlcb; solution structure of the small dictyostelium discoideium myosin light2 chain mlcb provides insights into iq-motif recognition of class i3 myosin myo1b
c4nt5A_ protein binding Chain: A: von willebrand factor; crystal structure of human von willebrand factor ctck domain
c4ovpB_ solute-binding protein Chain: B: c4-dicarboxylate transport system substrate-binding crystal structure of a trap periplasmic solute binding protein from2 sulfitobacter sp. nas-14.1, target efi-510292, with bound alpha-d-3 manuronate
c4o4aD_ lipid binding protein Chain: D: lipoprotein, putative; 2.75 angstrom crystal structure of putative lipoprotein from bacillus2 anthracis.
c4nc2A_ immune system Chain: A: toxin b; crystal structure of tcdb-b1 bound to b39 vhh
c4ovsB_ solute-binding protein Chain: B: trap dicarboxylate transporter, dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 sulfurospirillum deleyianum dsm 6946 (sdel_0447), target efi-510309,3 with bound succinate
c4bedA_ oxygen transport Chain: A: hemocyanin klh1; keyhole limpet hemocyanin (klh): 9a cryoem structure and2 molecular model of the klh1 didecamer reveal the interfaces3 and intricate topology of the 160 functional units
c4nq8B_ protein transport Chain: B: putative periplasmic substrate-binding transport protein; crystal structure of a trap periplasmic solute binding protein from2 bordetella bronchispeptica (bb3421), target efi-510039, with density3 modeled as pantoate
c4iswB_ transferase Chain: B: thymidylate synthase; crystal structure of phosphorylated c.elegans thymidylate synthase in2 complex with dump
c3wfrH_ transferase/rna Chain: H: poly a polymerase; trna processing enzyme complex 2
c2mekA_ metal binding protein Chain: A: n-terminal domain of bilbo1; n-terminal domain of bilbo1 from trypanosoma brucei
c4ib0S_ transferase/peptide Chain: S: phosphorylated pseudo-substrate peptide psp20; x-ray structure of camp dependent protein kinase a in complex with2 high na+ concentration, adp and phosphorylated peptide psp20
c4mnnA_ oxidoreductase Chain: A: glutaredoxin related protein; the crystal structure of sso1120 from sulfolobus solfataricus
c4lt5A_ oxidoreductase/dna Chain: A: naegleria tet-like dioxygenase; structure of a naegleria tet-like dioxygenase in complex with 5-2 methylcytosine dna
c4mymA_ oxidoreductase Chain: A: glyoxalase/bleomycin resistance protein/dioxygenase; crystal structure of a glyoxalase/ bleomycin resistance protein/2 dioxygenase from nocardioides
c3zdfD_ oxidoreductase Chain: D: cp12 polypeptide; structure of gapdh with cp12 peptide from thermosynechococcus2 elongatus
c4ce42_ ribosome Chain: 2: mrpl47; 39s large subunit of the porcine mitochondrial ribosome
c4icnB_ lyase Chain: B: dihydrodipicolinate synthase; dihydrodipicolinate synthase from shewanella benthica
c4nv4A_ hydrolase Chain: A: signal peptidase i; 1.8 angstrom crystal structure of signal peptidase i from bacillus2 anthracis.
c4ce4X_ ribosome Chain: X: mrpl23; 39s large subunit of the porcine mitochondrial ribosome
c4o5jA_ cell adhesion Chain: A: uncharacterized protein; crystal structure of saba from helicobacter pylori
c4jgxB_ lipid binding protein Chain: B: fatty acid-binding protein; the structure of sterol carrier protein 2 from the yeast yarrowia2 lipolytica
c3wfqE_ transferase/rna Chain: E: poly a polymerase; trna processing enzyme complex 1
c3zhiA_ transcription Chain: A: ci; n-terminal domain of the ci repressor from bacteriophage tp901-1
c4cekA_ transcription Chain: A: regulator of nonsense transcripts 2; crystal structure of the second mif4g domain of human2 nonsense mediated decay factor upf2
c3wn7M_ transcription Chain: M: peptide from nuclear factor erythroid 2-related factor 2; crystal structure of keap1 in complex with the n-terminal region of2 the nrf2 transcription factor
c3w19D_ membrane protein/inhibitor Chain: D: fusion inhibitor cp32m-2; potent hiv fusion inhibitor cp32m-2
c4c47B_ cell adhesion Chain: B: inner membrane lipoprotein; salmonella enterica trimeric lipoprotein sadb
c4ib1S_ transferase/peptide Chain: S: phosphorylated pseudo-substrate peptide psp20; structure of camp dependent protein kinase a in complex with high k+2 concentration, adp and phosphorylated peptide psp20
c4im6A_ structural protein Chain: A: nacht, lrr and pyd domains-containing protein 1; lrr domain from human nlrp1
c4ce4P_ ribosome Chain: P: mrpl15; 39s large subunit of the porcine mitochondrial ribosome
c2mckA_ hydrolase Chain: A: polyprotein; backbone 1h, 13c, and 15n chemical shift assignments for murine2 norovirus cr6 ns1/2 protein
c4ce4W_ ribosome Chain: W: mrpl22; 39s large subunit of the porcine mitochondrial ribosome
c4mu6A_ unknown function Chain: A: kinectin 1 (kinesin receptor); crystal structure of the n-terminal domain of effector protein legc32 from legionella pneumophila
c4ntlA_ transport protein Chain: A: lipoprotein, yaec family; crystal structure of a lipoprotein, yaec family (ef3198) from2 enterococcus faecalis v583 at 1.80 a resolution
c4ce4c_ ribosome Chain: C: 39s large subunit of the porcine mitochondrial ribosome
c4mspB_ isomerase Chain: B: peptidyl-prolyl cis-trans isomerase fkbp14; crystal structure of human peptidyl-prolyl cis-trans isomerase fkbp222 (aka fkbp14) containing two ef-hand motifs
c4ce48_ ribosome Chain: 8: mrpl35; 39s large subunit of the porcine mitochondrial ribosome
c3j5o2_ ribosome/translation Chain: 2: 50s ribosomal protein l34; visualization of two trnas trapped in transit during ef-g-mediated2 translocation (50s subunit)
c4ce4i_ ribosome Chain: I: mrpl9; 39s large subunit of the porcine mitochondrial ribosome
c4npxA_ unknown function Chain: A: putative uncharacterized protein; structure of hypothetical protein cj0539 from campylobacter jejuni
c4cfhA_ transferase Chain: A: 5'-amp-activated protein kinase catalytic subunit alpha-1; structure of an active form of mammalian ampk
c4ce4D_ ribosome Chain: D: mrpl2; 39s large subunit of the porcine mitochondrial ribosome
c3wfqH_ transferase/rna Chain: H: poly a polymerase; trna processing enzyme complex 1
c3j5w6_ translation Chain: 6: 50s ribosomal protein l34; structure of the ribosome with elongation factor g trapped in the pre-2 translocation state (pre-translocation 70s*trna*ef-g structure, 50s3 subunit)
c4ce41_ ribosome Chain: 1: mrpl28; 39s large subunit of the porcine mitochondrial ribosome
c3wiwA_ hydrolase Chain: A: glycosyl hydrolase family 88; crystal structure of unsaturated glucuronyl hydrolase specific for2 heparin
c2m8eA_ dna binding protein Chain: A: sleeping beauty transposase; nmr structure of the pai subdomain of sleeping beauty transposase
c3witA_ structural protein Chain: A: putative vgr protein; crystal structure of the c-terminal region of vgrg1 from e. coli o1572 edl933
c4n5xA_ calcium-binding protein Chain: A: calcium-binding mitochondrial carrier protein scamc-1; crystal structure of n-terminal calmodulin-like calcium sensor of2 human mitochondrial atp-mg/pi carrier scamc1
c3wfrE_ transferase/rna Chain: E: poly a polymerase; trna processing enzyme complex 2
c4cc9A_ protein binding Chain: A: protein vprbp; crystal structure of human samhd1 (amino acid residues 582-2 626) bound to vpx isolated from sooty mangabey and human3 dcaf1 (amino acid residues 1058-1396)
c2mhyA_ signaling protein Chain: A: plethodontid modulating factor; structure determination of the salamander courtship pheromone2 plethodontid modulating factor
c4ce4F_ ribosome Chain: F: mrpl4; 39s large subunit of the porcine mitochondrial ribosome
c3wfpA_ transferase Chain: A: poly a polymerase; trna processing enzyme (apo form 2)
c2m7cA_ de novo protein Chain: A: trp-cage mini-protein; circular permutation of the trp-cage: fold rescue upon addition of a2 hydrophobic staple
c3wecA_ oxidoreductase Chain: A: cytochrome p450; structure of p450 raua (cyp1050a1) complexed with a biosynthetic2 intermediate of aurachin re
c4ihnA_ hormone Chain: A: insulin a chain; high resolution insulin by langmuir-blodgett modified hanging drop2 vapour diffusion
c2m97A_ metal binding protein Chain: A: optimized ratiometric calcium sensor; optimized ratiometric calcium sensors for functional in vivo imaging2 of neurons and t-lymphocytes
c4ce45_ ribosome Chain: 5: mrpl32; 39s large subunit of the porcine mitochondrial ribosome
c4ce4Q_ ribosome Chain: Q: mrpl16; 39s large subunit of the porcine mitochondrial ribosome
c4mknA_ isomerase Chain: A: triosephosphate isomerase; crystal structure of chloroplastic triosephosphate isomerase from2 chlamydomonas reinhardtii at 1.1 a of resolution
c4n3bB_ transferase/substrate Chain: B: host cell factor 1; crystal structure of human o-glcnac transferase bound to a peptide2 from hcf-1 pro-repeat2(1-26)e10q and udp-5sglcnac


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Commercial users please contact Michael Sternberg

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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