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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Nov 23

Fold library idPDB HeaderMoleculeTitle
c4bhrA_ cell adhesion Chain: A: pilin, type iv; structure of the ttha1221 type iv pilin protein from2 thermus thermophilus
c3zieC_ cell cycle Chain: C: sepf-like protein; sepf-like protein from archaeoglobus fulgidus
c4ng7A_ transport protein Chain: A: trap periplasmic solute binding protein; crystal structure of a trap periplasmic solute binding protein from2 citrobacter koseri (cko_04899), target efi-510094, apo, open3 structure
c4bj8E_ biotin-binding protein Chain: E: zebavidin; zebavidin
c4bxtE_ viral protein Chain: E: phosphoprotein p; crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
c4c84B_ ligase Chain: B: e3 ubiquitin-protein ligase znrf3; zebrafish znrf3 ectodomain crystal form i
c4nf0E_ transport protein Chain: E: probable c4-dicarboxylate-binding protein; crystal structure of a trap periplasmic solute binding protein from2 pseudomonas aeruginosa pao1 (pa4616), target efi-510182, with bound3 l-malate
c4bmjC_ apoptosis Chain: C: tax1-binding protein 1; structure of the ubz1and2 tandem of the ubiquitin-binding adaptor2 protein tax1bp1
c4bynn_ ribosome Chain: N: 60s ribosomal protein l15-a; cryo-em reconstruction of the 80s-eif5b-met-itrnamet eukaryotic2 translation initiation complex
c4hljA_ cell adhesion Chain: A: roundabout homolog 1; axon guidance receptor
c4c0zK_ cell adhesion Chain: K: ancillary protein 1; the n-terminal domain of the streptococcus pyogenes pilus2 tip adhesin cpa
c4c9eB_ ligase/signaling protein Chain: B: r-spondin-2; mouse znrf3 ectodomain in complex with xenopus rspo2 fu1-2 fu2 (seleno met) crystal form ii
c4nimA_ oxidoreductase Chain: A: versicolorin reductase; crystal structure of a short chain dehydrogenase from brucella2 melitensis
c4kmhB_ protein binding Chain: B: suppressor of fused homolog; crystal structure of suppressor of fused d20
c4n7bA_ oxidoreductase Chain: A: lytb; structure of the e-1-hydroxy-2-methyl-but-2-enyl-4-diphosphate2 reductase from plasmodium falciparum
c4lgtA_ isomerase/rna Chain: A: ribosomal large subunit pseudouridine synthase b; crystal structure of the catalytic domain of rlub in complex with a2 21-nucleotide rna substrate
c4buhA_ immune system Chain: A: clone m0418 scfv; human ige against the major allergen bet v 1 - crystal2 structure of clone m0418 scfv
c4izxA_ sugar binding protein Chain: A: ricin b-like lectin; macrolepiota procera ricin b-like lectin (mpl) in complex with lactose
c4nhwB_ transferase Chain: B: glutathione s-transferase; crystal structure of glutathione transferase smc00097 from2 sinorhizobium meliloti, target efi-507275, with one glutathione bound3 per one protein subunit
c4i5zA_ hormone Chain: A: insulin; insulin protein crystallization via langmuir-blodgett
c4bxtF_ viral protein Chain: F: phosphoprotein p; crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
c4nhbB_ transport protein Chain: B: trap dicarboxylate transporter-dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 desulfovibrio desulfuricans (ddes_1525), target efi-510107, with3 bound sn-glycerol-3-phosphate
c4hh5A_ protein binding Chain: A: putative type vi secretion protein; n-terminal domain (1-163) of clpv1 atpase from e.coli eaec sci1 t6ss.
c2m9oA_ plant protein Chain: A: kalata-b7; solution structure of kalata b7
c4mmvB_ viral protein Chain: B: fusion glycoprotein f1 fused with fibritin trimerization crystal structure of prefusion-stabilized rsv f variant ds-cav1-tric2 at ph 9.5
c4byl7_ ribosome Chain: 7: suppressor protein stm1; cryo-em reconstruction of the 80s-eif5b-met-itrnamet2 eukaryotic translation initiation complex
c4bxtG_ viral protein Chain: G: phosphoprotein p; crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
c4byt7_ ribosome Chain: 7: suppressor protein stm1; cryo-em reconstruction of the 80s-eif5b-met-itrnamet2 eukaryotic translation initiation complex
c4jraC_ hydrolase Chain: C: synaptic vesicle glycoprotein 2c; crystal structure of the botulinum neurotoxin a receptor-binding2 domain in complex with the luminal domain of sv2c
c4bxtH_ viral protein Chain: H: phosphoprotein p; crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
c4byrP_ ribosome Chain: P: eukaryotic translation initiation factor 5b; cryo-em reconstruction of the 80s-eif5b-met-itrnamet2 eukaryotic translation initiation complex
c4bxtC_ viral protein Chain: C: phosphoprotein p; crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
c4byuW_ ribosome Chain: W: 60s ribosomal protein l24-a; cryo-em reconstruction of the 80s-eif5b-met-itrnamet2 eukaryotic translation initiation complex
c4byuq_ ribosome Chain: Q: 60s ribosomal protein l18-a; cryo-em reconstruction of the 80s-eif5b-met-itrnamet2 eukaryotic translation initiation complex
c3zfjA_ zinc-binding protein Chain: A: pneumococcal histidine triad protein d; n-terminal domain of pneumococcal phtd protein with bound2 zn(ii)
c4bxtB_ viral protein Chain: B: phosphoprotein p; crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
c4c9vA_ signaling protein Chain: A: rnf43; xenopus rnf43 ectodomain in complex with xenopus rspo2 fu1-fu2
c2lxeA_ transferase Chain: A: histone-lysine n-methyltransferase suvr4; s4wyild
c4bxtD_ viral protein Chain: D: phosphoprotein p; crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
c4i5yA_ hormone Chain: A: insulin; insulin protein crystallization via langmuir-blodgett
c4bxtA_ viral protein Chain: A: phosphoprotein p; crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
c4byt5_ ribosome Chain: 5: ubiquitin-40s ribosomal protein s31; cryo-em reconstruction of the 80s-eif5b-met-itrnamet2 eukaryotic translation initiation complex
c4n9xA_ oxidoreductase Chain: A: putative monooxygenase; crystal structure of the octaprenyl-methyl-methoxy-benzq molecule from2 erwina carotovora subsp. atroseptica strain scri 1043 / atcc baa-672,3 northeast structural genomics consortium (nesg) target ewr161
c4n8yA_ transport protein Chain: A: putative trap-type c4-dicarboxylate transport system, crystal structure of a trap periplasmic solute binding protein from2 bradyrhizobium sp. btai1 b (bbta_0128), target efi-5100563 (bbta_0128), complex with alpha/beta-d-galacturonate
c4byun_ ribosome Chain: N: 60s ribosomal protein l15-a; cryo-em reconstruction of the 80s-eif5b-met-itrnamet2 eukaryotic translation initiation complex
c4bhqA_ cell adhesion Chain: A: competence protein piln; structure of the periplasmic domain of the piln type iv2 pilus biogenesis protein from thermus thermophilus
c4byl5_ ribosome Chain: 5: ubiquitin-40s ribosomal protein s31; cryo-em reconstruction of the 80s-eif5b-met-itrnamet2 eukaryotic translation initiation complex
c4byxV_ ribosome Chain: V: eukaryotic translation initiation factor 5b, probable cryo-em reconstruction of the 80s-eif5b-met-itrnamet eukaryotic2 translation initiation complex
c4kmaA_ protein binding Chain: A: gm14141p; crystal structure of drosophila suppressor of fused
c2mdtA_ unknown function Chain: A: putative uncharacterized protein; a pilt n-terminus domain protein sso1118 from hyperthemophilic2 archaeon sulfolobus solfataricus p2
c4bynW_ ribosome Chain: W: 60s ribosomal protein l24-a; cryo-em reconstruction of the 80s-eif5b-met-itrnamet eukaryotic2 translation initiation complex


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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