Standard Mode | Switch to Expert Mode | Login to view past jobs Retrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Nov 16

Fold library idPDB HeaderMoleculeTitle
c4mxwB_ cytokine/immune system Chain: B: lymphotoxin-beta; structure of heterotrimeric lymphotoxin lta1b2 bound to lymphotoxin2 beta receptor ltbr and anti-lta fab
c4lzkE_ unknown function Chain: E: pixa inclusion body protein; crystal structure of inclusion body protein (pixa pfam12306) from2 burkholderia cenocepacia j2315
c4m78H_ rna binding protein Chain: H: u6 snrna-associated sm-like protein lsm8; crystal structure of spliceosomal u6 snrnp protein complex
c2m01A_ toxin Chain: A: protease inhibitor lmktt-1a; solution structure of kunitz-type neurotoxin lmkkt-1a from scorpion2 venom
c4n0gB_ hydrolase/receptor Chain: B: protein phosphatase 2c 37; crystal structure of pyl13-pp2ca complex
c4c5eH_ transcription Chain: H: polycomb protein pho; crystal structure of the minimal pho-sfmbt complex (p21 spacegroup)
c3j5mI_ viral protein/immune system Chain: I: bg505 sosip gp120; cryo-em structure of the bg505 sosip.664 hiv-1 env trimer with 3 pgv042 fabs
c4ccfD_ viral protein Chain: D: fusion glycoprotein f0; structure of respiratory syncytial virus f protein head domain
c4my2A_ signaling protein Chain: A: maltose-binding periplasmic protein, norrin fusion protein; crystal structure of norrin in fusion with maltose binding protein
c4n6bB_ transferase Chain: B: serine acetyltransferase apoenzyme; soybean serine acetyltransferase complexed with coa
c4nasD_ lyase Chain: D: ribulose-bisphosphate carboxylase; the crystal structure of a rubisco-like protein (mtnw) from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446
c4c5eG_ transcription Chain: G: polycomb protein pho; crystal structure of the minimal pho-sfmbt complex (p21 spacegroup)
c4llgJ_ transferase Chain: J: dna-directed rna polymerase subunit beta'; crystal structure analysis of the e.coli holoenzyme/gp2 complex
c4c90B_ hydrolase Chain: B: alpha-glucuronidase gh115; evidence that gh115 alpha-glucuronidase activity is2 dependent on conformational flexibility
c4c1sA_ hydrolase Chain: A: glycoside hydrolase family 76 mannosidase; glycoside hydrolase family 76 (mannosidase) bt3792 from2 bacteroides thetaiotaomicron vpi-5482
c4negA_ lyase Chain: A: tryptophan synthase beta chain; the crystal structure of tryptophan synthase subunit beta from2 bacillus anthracis str. 'ames ancestor'
c4napD_ transport protein Chain: D: extracellular solute-binding protein, family 7; crystal structure of a trap periplasmic solute binding protein from2 desulfovibrio alaskensis g20 (dde_0634), target efi-510102, with3 bound d-tryptophan
c4m77H_ structural protein Chain: H: u6 snrna-associated sm-like protein lsm8; crystal structure of spliceosomal u6 snrnp core domain
c4m70A_ plant protein Chain: A: rx protein; crystal structure of potato rx-cc domain in complex with rangap2-wpp2 domain
c4n0lB_ rna binding protein Chain: B: predicted component of a thermophile-specific dna repair methanopyrus kandleri csm3 crystal structure
c4hssA_ cell adhesion Chain: A: putative fimbrial subunit; structure of the full-length major pilin spad from corynebacterium2 diphtheriae
c3we3B_ dna binding protein Chain: B: bloom syndrome protein; structure of blm rqc domain bound to an arsenate ion
c4n91A_ transport protein Chain: A: trap dicarboxylate transporter, dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 anaerococcus prevotii dsm 20548 (apre_1383), target efi-510023, with3 bound alpha/beta d-glucuronate
c4n7qA_ lyase Chain: A: phosphomethylpyrimidine synthase, chloroplastic; crystal structure of eukaryotic thic from a. thaliana
c4n6kA_ transport protein Chain: A: trap dicarboxylate transporter-dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 desulfovibrio salexigens dsm2638, target efi-510113 (desal_0342),3 complex with diglycerolphosphate
c3j4qC_ transferase Chain: C: camp-dependent protein kinase type ii-alpha regulatory pseudo-atomic model of the akap18-pka complex in a bent conformation2 derived from electron microscopy
c2mawA_ membrane protein Chain: A: neuronal acetylcholine receptor subunit alpha-7; nmr structures of the alpha7 nachr transmembrane domain.
c2lt1A_ transcription Chain: A: card protein; solution nmr structure of the 72-residue n-terminal domain of2 myxococcus xanthus card
c4m70R_ plant protein Chain: R: ran gtpase activating protein 2; crystal structure of potato rx-cc domain in complex with rangap2-wpp2 domain
c4le6B_ hydrolase Chain: B: organophosphorus hydrolase; crystal structure of the phosphotriesterase ophc2 from pseudomonas2 pseudoalcaligenes
c3j5a2_ ribosome Chain: 2: 50s ribosomal protein l34; e. coli 70s-fmetval-trnaval-trnafmet complex in classic post-2 translocation state (post1, 50s subunit)
c3j5e2_ ribosome Chain: 2: 50s ribosomal protein l34; e. coli 70s-fmetval-trnaval-trnafmet complex in intermediate post-2 translocation state (post2b, 50s subunit)
c3j4x2_ ribosome Chain: 2: 50s ribosomal protein l34; e. coli 70s-fmetval-trnaval-trnafmet complex in classic pre-2 translocation state (pre1b, 50s subunit)
c4i84B_ protein transport Chain: B: heme/hemopexin-binding protein; the crystal structure of the haemophilus influenzae hxua secretion2 domain involved in the two-partner secretion pathway
c4cdgC_ hydrolase Chain: C: nanobody; crystal structure of the bloom's syndrome helicase blm in2 complex with nanobody
c4m70E_ plant protein Chain: E: ran gtpase activating protein 2; crystal structure of potato rx-cc domain in complex with rangap2-wpp2 domain
c2mctA_ structural genomics, unknown function Chain: A: uncharacterized protein; nmr structure of the protein zp_02042476.1 from ruminococcus gnavus
c4mxwR_ cytokine/immune system Chain: R: tumor necrosis factor receptor superfamily member 3; structure of heterotrimeric lymphotoxin lta1b2 bound to lymphotoxin2 beta receptor ltbr and anti-lta fab
c2md7B_ transcription Chain: B: nuclear body protein sp140; nmr structure of human sp140 phd finger trans conformer
c3j512_ ribosome Chain: 2: 50s ribosomal protein l34; e. coli 70s-fmetval-trnaval-trnafmet complex in intermediate pre-2 translocation state (pre3, 50s subunit)
c4cdgA_ hydrolase Chain: A: bloom syndrome protein; crystal structure of the bloom's syndrome helicase blm in2 complex with nanobody
c3j522_ ribosome Chain: 2: 50s ribosomal protein l32; e. coli 70s-fmetval-trnaval-trnafmet complex in classic pre-2 translocation state (pre1a, 50s subunit)
c2lt3A_ transcription Chain: A: transcriptional regulator, card family; solution nmr structure of the c-terminal domain of cdnl from2 myxococcus xanthus
c3j542_ ribosome Chain: 2: 50s ribosomal protein l34; e. coli 70s-fmetval-trnaval-trnafmet complex in hybrid pre-2 translocation state (pre4, 50s subunit)
c2mblA_ de novo protein Chain: A: top7 fold protein top7m13; solution nmr structure of de novo designed top7 fold protein top7m13,2 northeast structural genomics consortium (nesg) target or33
c3j5c2_ ribosome Chain: 2: 50s ribosomal protein l34; e. coli 70s-fmetval-trnaval-trnafmet complex in intermediate post-2 translocation state (post2a, 50s subunit)
c2lt4A_ transcription Chain: A: transcriptional regulator, card family; cdnlnt from myxoccoccus xanthus
c4n0gC_ hydrolase/receptor Chain: C: abscisic acid receptor pyl13; crystal structure of pyl13-pp2ca complex
c3j5k2_ ribosome Chain: 2: 50s ribosomal protein l34; e. coli 70s-fmetval-trnaval post-translocation complex (post4, 50s2 subunit)
c4bs2A_ transcription Chain: A: tar dna-binding protein 43; nmr structure of human tdp-43 tandem rrms in complex with ug-rich rna
c3j4rA_ transferase Chain: A: a-kinase anchor protein 18; pseudo-atomic model of the akap18-pka complex in a linear conformation2 derived from electron microscopy
c4ni5A_ oxidoreductase Chain: A: oxidoreductase, short-chain dehydrogenase/reductase family crystal structure of a short chain dehydrogenase from brucella suis
c3j502_ ribosome Chain: 2: 50s ribosomal protein l34; e. coli 70s-fmetval-trnaval-trnafmet complex in intermediate pre-2 translocation state (pre2, 50s subunit)
c3j582_ ribosome Chain: 2: 50s ribosomal protein l34; e. coli 70s-fmetval-trnaval-trnafmet complex in hybrid pre-2 translocation state (pre5b, 50s subunit)
c4lgcA_ ligase Chain: A: bile acid-coenzyme a ligase; crystal structure of a bile acid-coenzyme a ligase (baib) from2 clostridium scindens (vpi 12708) at 2.19 a resolution
c4c9bB_ splicing Chain: B: pre-mrna-splicing factor cwc22 homolog; crystal structure of eif4aiii-cwc22 complex
c4mjfA_ structural genomics, unknown function Chain: A: hypothetical protein; crystal structure of a hypothetical protein (bvu_2238) from2 bacteroides vulgatus atcc 8482 at 1.99 a resolution
c3j5g2_ ribosome Chain: 2: 50s ribosomal protein l34; e. coli 70s-fmetval-trnaval-trnafmet complex in intermediate post-2 translocation state (post3a, 50s subunit)
c2m9yA_ ligase Chain: A: e3 ubiquitin-protein ligase arih1; solution structure of the catalytic domain of hhari
c4lpqA_ transferase Chain: A: erfk/ybis/ycfs/ynhg family protein; crystal structure of the l,d-transpeptidase (residues 123-326) from2 xylanimonas cellulosilytica dsm 15894
c3j5i2_ ribosome Chain: 2: 50s ribosomal protein l34; e. coli 70s-fmetval-trnaval-trnafmet complex in intermediate post-2 translocation state (post3b, 50s subunit)
c4hh8A_ protein binding Chain: A: butyrophilin subfamily 1 member a1; crystal structure of bovine butyrophilin
c3j562_ ribosome Chain: 2: 50s ribosomal protein l34; e. coli 70s-fmetval-trnaval-trnafmet complex in hybrid pre-2 translocation state (pre5a, 50s subunit)


Phyre is for non-commercial use only

Commercial users please contact Michael Sternberg

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
Disclaimer
Terms and Conditions

Phyre2 is part of Genome3D