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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Nov 09

Fold library idPDB HeaderMoleculeTitle
c4ji3U_ ribosome Chain: U: ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c4nbrA_ oxidoreductase Chain: A: hypothetical 3-oxoacyl-(acyl-carrier protein) reductase; crystal structure of 3-oxoacyl-[acyl-carrier protein] reductase from2 brucella melitensis atcc 23457
c2mf8A_ metal binding protein/dna Chain: A: myelin transcription factor 1; haddock model of myt1 f4f5 - dna complex
c4bqnB_ transferase Chain: B: capsular polysaccharide biosynthesis protein; structural insights into wcbi, a novel polysaccharide2 biosynthesis enzyme. native protein.
c4c3yF_ oxidoreductase Chain: F: 3-ketosteroid dehydrogenase; crystal structure of 3-ketosteroid delta1-dehydrogenase2 from rhodococcus erythropolis sq1 in complex with 1,4-3 androstadiene-3,17-dione
c4k2jB_ dna binding protein, viral protein Chain: B: kshv (hhv-8) latency-associated nuclear antigen (lana); decameric ring structure of kshv (hhv-8) latency-associated nuclear2 antigen (lana) dna binding domain
c4cbfE_ virus Chain: E: envelope protein e; near-atomic resolution cryo-em structure of dengue2 serotype 4 virus
c4c7aA_ signaling protein Chain: A: smoothened; crystal structure of the smoothened crd, selenomethionine-2 labeled
c4navB_ hydrolase Chain: B: hypothetical protein xcc279; crystal structure of hypothetical protein xcc2798 from xanthomonas2 campestris, target efi-508608
c4l6tB_ hydrolase Chain: B: ecxb; gm1 bound form of the ecx ab5 holotoxin
c4lnjA_ lyase Chain: A: low-specificity l-threonine aldolase; structure of escherichia coli threonine aldolase in unliganded form
c4m9qC_ hydrolase Chain: C: arf-like gtpase; crystal structure of c-terminally truncated arl13b from chlamydomonas2 rheinhardtii bound to gppnhp
c4jmqA_ viral protein Chain: A: bacteriophage t5 distal tail protein; crystal structure of pb9: the dit of bacteriophage t5.
c4cbfB_ virus Chain: B: m protein; near-atomic resolution cryo-em structure of dengue2 serotype 4 virus
c4jdeA_ unknown function Chain: A: protein f15e11.13; crystal structure of pud-1/pud-2 heterodimer
c4hsyA_ oxidoreductase Chain: A: ketoreductase siam; crystal structure of ketoreductase siam from streptomyces sp. a7248
c4ji4U_ ribosome/antibiotic Chain: U: ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c4nawC_ protein transport/ligase Chain: C: autophagy-related protein 16-1; crystal structure of human atg12~atg5-atg16n in complex with a2 fragment of atg3
c4ji7U_ ribosome Chain: U: ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c4ji6U_ ribosome Chain: U: ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c4ji2U_ ribosome Chain: U: ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c4ji1U_ ribosome/antibiotic Chain: U: ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c2m2qA_ unknown function Chain: A: inhibitor cystine knot peptide mch-1; solution structure of mch-1: a novel inhibitor cystine knot peptide2 from momordica charantia
c4mj7B_ rna binding protein Chain: B: rrna-processing protein utp23; crystal structure of the pin domain of saccharomyces cerevisiae utp23
c4c9dA_ hydrolase/rna Chain: A: cas6b; cas6 (tthb231) product complex
c4nawK_ protein transport/ligase Chain: K: autophagy-related protein 16-1; crystal structure of human atg12~atg5-atg16n in complex with a2 fragment of atg3
c4c97B_ hydrolase Chain: B: cas6a; cas6 (ttha0078) h37a mutant
c4nawG_ protein transport/ligase Chain: G: autophagy-related protein 16-1; crystal structure of human atg12~atg5-atg16n in complex with a2 fragment of atg3
c4lzpB_ immune system Chain: B: putative uncharacterized protein; structure of the tir domain of the immunosuppressor btpa from brucella
c4l6tA_ hydrolase Chain: A: ecxa; gm1 bound form of the ecx ab5 holotoxin
c4narA_ isomerase Chain: A: putative uronate isomerase; crystal structure of the q9wys3 protein from thermotoga maritima.2 northeast structural genomics consortium target vr152
c4m4zA_ signaling protein Chain: A: src-like-adapter 2; sh3 and sh2 domains of human src-like adaptor protein 2 (slap2)
c4iitB_ oxidoreductase Chain: B: phenylacetate-coa oxygenase subunit paab; the phenylacetyl-coa monooxygenase paaabc subcomplex with2 phenylacetyl-coa
c4m5dB_ rna binding protein Chain: B: ribosomal rna-processing protein 7; crystal structure of the utp22 and rrp7 complex from saccharomyces2 cerevisiae
c4g32A_ oxidoreductase Chain: A: 15s-lipoxygenase; crystal structure of a phospholipid-lipoxygenase complex from2 pseudomonas aeruginosa at 1.75a (p21212)
c4mboA_ protein binding Chain: A: serine-rich repeat adhesion glycoprotein (srr1); 1.65 angstrom crystal structure of serine-rich repeat adhesion2 glycoprotein (srr1) from streptococcus agalactiae
c4n0qD_ transport protein Chain: D: leu/ile/val-binding protein homolog 3; crystal structure of an abc transporter, substrate-binding protein2 from brucella melitensis 16m in complex with l-leucine using a3 crystal grown in a crystal former (microlytic)
c4m5dA_ rna binding protein Chain: A: u3 small nucleolar rna-associated protein 22; crystal structure of the utp22 and rrp7 complex from saccharomyces2 cerevisiae
c4lzpA_ immune system Chain: A: putative uncharacterized protein; structure of the tir domain of the immunosuppressor btpa from brucella
c4ji0U_ ribosome Chain: U: ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c4hzvA_ hydrolase Chain: A: neuraminidase; the crystal structure of influenza a neuraminidase n3
c4m88A_ transport protein Chain: A: extracellular ligand-binding receptor; crystal structure of extracellular ligand-binding receptor from2 verminephrobacter eiseniae ef01-2
c4ji8U_ ribosome/antibiotic Chain: U: ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c4lcbA_ protein transport Chain: A: cell division protein cdvc, vps4; structure of vps4 homolog from acidianus hospitalis
c4nawO_ protein transport/ligase Chain: O: autophagy-related protein 16-1; crystal structure of human atg12~atg5-atg16n in complex with a2 fragment of atg3
c4ji5U_ ribosome/antibiotic Chain: U: ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c4jdeB_ unknown function Chain: B: protein f15e11.1; crystal structure of pud-1/pud-2 heterodimer
c4mybA_ transferase Chain: A: 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; crystal structure of francisella tularensis 2-c-methyl-d-erythritol 4-2 phosphate cytidylyltransferase (ispd)
c4bs9A_ isomerase Chain: A: trud; structure of the heterocyclase trud
c4mbrA_ protein binding Chain: A: serine-rich repeat protein 2; 3.65 angstrom crystal structure of serine-rich repeat protein (srr2)2 from streptococcus agalactiae
c2mewA_ structural protein Chain: A: 30s ribosomal protein s10; solution structure of nuse (s10) from thermotoga maritima
c4ovjA_ transport protein Chain: A: extracellular solute-binding protein family 1; extracellular solute-binding protein family 1 from alicyclobacillus2 acidocaldarius subsp. acidocaldarius dsm 446
c4g33A_ oxidoreductase Chain: A: 15s-lipoxygenase; crystal structure of a phospholipid-lipoxygenase complex from2 pseudomonas aeruginosa at 2.0 a (c2221)
c2m2rA_ unknown function Chain: A: inhibitor cystine knot peptide mch-2; solution structure of mch-2: a novel inhibitor cystine knot peptide2 from momordica charantia


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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