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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Oct 26

Fold library idPDB HeaderMoleculeTitle
c4k3yA_ viral protein Chain: A: neuraminidase; crystal structure of a subtype n11 neuraminidase-like protein of2 a/flat-faced bat/peru/033/2010 (h18n11)
c2yp1A_ oxidoreductase Chain: A: aromatic peroxygenase; crystallization of a 45 kda peroxygenase- peroxidase from2 the mushroom agrocybe aegerita and structure determination3 by sad utilizing only the haem iron
c4k90B_ hydrolase Chain: B: extracellular metalloproteinase mep; extracellular metalloproteinase from aspergillus
c4i8oA_ toxin Chain: A: toxin rnla; crystal structure of the toxin rnla from escherichia coli
c4c2mK_ transcription Chain: K: dna-directed rna polymerases i and iii subunit rpac2; structure of rna polymerase i at 2.8 a resolution
c4j2nA_ viral protein Chain: A: gp37; crystal structure of mycobacteriophage pukovnik xis
c3j44h_ ribosome/protein transport Chain: H: 50s ribosomal protein l11p; structure of the methanococcus jannaschii ribosome-secyebeta channel2 complex (50s ribosomal subunit)
c4maqB_ hydrolase Chain: B: putative fumarylpyruvate hydrolase; crystal structure of a putative fumarylpyruvate hydrolase from2 burkholderia cenocepacia
c4lz9A_ transport protein Chain: A: bh2163 protein; structure of mate multidrug transporter dinf-bh in complex with r6g
c4guzA_ transferase Chain: A: probable arylamine n-acetyl transferase; structure of the arylamine n-acetyltransferase from mycobacterium2 abscessus
c4c2mX_ transcription Chain: X: dna-directed rna polymerase i subunit rpa12; structure of rna polymerase i at 2.8 a resolution
c4mc5C_ viral protein Chain: C: hemagglutinin; crystal structure of a subtype h18 hemagglutinin homologue from2 a/flat-faced bat/peru/033/2010 (h18n11)
c4bzbB_ hydrolase Chain: B: deoxynucleoside triphosphate triphosphohydrolase samhd1; crystal structure of the tetrameric dgtp-bound samhd12 mutant catalytic core
c4jgsI_ viral protein Chain: I: mlv-related proviral env polyprotein; crystal structure of the xmrv tm retroviral fusion core
c2m05A_ unknown function Chain: A: beta-amyloid-like protein; structure of module 2 from the e1 domain of c. elegans apl-1
c4c3hC_ transcription Chain: C: dna-directed rna polymerases i and iii subunit rpac1; structure of 14-subunit rna polymerase i at 3.27 a resolution,2 crystal form c2-93
c2ynbA_ hydrolase Chain: A: 3c-like proteinase; crystal structure of the main protease of coronavirus hku42 in complex with a michael acceptor sg85
c4j2nB_ viral protein Chain: B: gp37; crystal structure of mycobacteriophage pukovnik xis
c4k90A_ hydrolase Chain: A: extracellular metalloproteinase mep; extracellular metalloproteinase from aspergillus
c4c0tA_ transferase Chain: A: likely protein kinase; candida albicans pkh kinase domain
c4c3jG_ transcription Chain: G: dna-directed rna polymerase i subunit rpa43; structure of 14-subunit rna polymerase i at 3.35 a resolution,2 crystal form c2-90
c4ltpC_ transport protein Chain: C: ion transport protein; bacterial sodium channel in high calcium, i222 space group, crystal 2
c4c3hM_ transcription Chain: M: dna-directed rna polymerase i subunit rpa49; structure of 14-subunit rna polymerase i at 3.27 a resolution,2 crystal form c2-93
c4icqB_ hydrolase Chain: B: aminopeptidase peps; structural basis for substrate recognition and reaction mechanism of2 bacterial aminopeptidase peps
c4kgbB_ transferase Chain: B: succinyl-coa:3-ketoacid-coenzyme a transferase; structure of succinyl-coa: 3-ketoacid coa transferase from drosophila2 melanogaster
c4if6B_ hydrolase Chain: B: nad-dependent protein deacetylase sirtuin-1; structure of nucleoporin complex
c4lisA_ isomerase Chain: A: udp-glucose 4-epimerase; crystal structure of udp-galactose-4-epimerase from aspergillus2 nidulans
c4jmxA_ transferase/transferase inhibitor Chain: A: probable l,d-transpeptidase ldta; structure of ld transpeptidase ldtmt1 in complex with imipenem
c4k68B_ hydrolase Chain: B: gh10 xylanase; structure of a novel gh10 endoxylanase retrieved from sugarcane soil2 metagenome
c4c3iA_ transferase Chain: A: dna-directed rna polymerase i subunit rpa190; structure of 14-subunit rna polymerase i at 3.0 a resolution,2 crystal form c2-100
c4mxnB_ hydrolase Chain: B: uncharacterized protein; crystal structure of a hypothetical protein (parmer_00599) from2 parabacteroides merdae atcc 43184 at 1.95 a resolution
c4n0rB_ structural genomics, unknown function Chain: B: putative glycoside hydrolase; crystal structure of a putative glycoside hydrolase (bvu_0362) from2 bacteroides vulgatus atcc 8482 at 1.80 a resolution
c3j46n_ ribosome/protein transport Chain: N: structure of the secy protein translocation channel in action
c2yn7A_ membrane protein Chain: A: outer surface protein; crystal structure of an outer surface protein bba66 from2 borrelia burgdorferi
c4fb3E_ dna binding protein/dna Chain: E: large t antigen; polyomavirus t-ag binds symmetrical repeats at the viral origin in an2 asymmetrical manner
c3w56A_ lipid binding protein Chain: A: c2 domain protein; structure of a c2 domain
c4c2mQ_ transcription Chain: Q: dna-directed rna polymerase i subunit rpa135; structure of rna polymerase i at 2.8 a resolution
c4c2m3_ transcription Chain: 3: dna-directed rna polymerase i subunit rpa34; structure of rna polymerase i at 2.8 a resolution
c4n4uA_ transport protein Chain: A: putative abc transporter periplasmic solute-binding crystal structure of abc transporter solute binding protein bb07192 from bordetella bronchiseptica rb50, target efi-510049
c4jf3A_ viral protein Chain: A: envelope glycoprotein; crystal structure of the mpmv tm retroviral fusion core
c4hwvA_ lyase Chain: A: pectate lyase/amb allergen; structure of pectate lyase from acidovorax avenae subsp citrulli
c4kxqB_ hydrolase Chain: B: nad-dependent protein deacetylase sirtuin-1; structure of nad-dependent protein deacetylase sirtuin-1
c4me7E_ hydrolase/hydrolase inhibitor Chain: E: antitoxin endoai; crystal structure of bacillus subtilis toxin mazf in complex with2 cognate antitoxin maze
c4jrnA_ transferase Chain: A: rhoptry kinase family protein; rop18 kinase domain in complex with amp-pnp and sucrose
c2m7yA_ viral protein Chain: A: leader peptide; the mengovirus leader protein
c4mtlB_ transferase Chain: B: protein-lysine methyltransferase mettl21c; human methyltransferase-like protein 21c
c2lzyA_ toxin Chain: A: abu8-3; solution nmr structure of asteropsin c from a marine sponge asteropus2 sp.


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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