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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Oct 19

Fold library idPDB HeaderMoleculeTitle
c4by6F_ transcription Chain: F: general negative regulator of transcription subunit 5; yeast not1-not2-not5 complex
c4mggB_ isomerase Chain: B: muconate lactonizing enzyme; crystal structure of an enolase (mandelate racemase subgroup) from2 labrenzia aggregata iam 12614 (target nysgrc-012903) with bound mg,3 space group p212121
c4c8qF_ transcription Chain: F: u6 snrna-associated sm-like protein lsm6; crystal structure of the yeast lsm1-7-pat1 complex
c4bjnC_ protein transport Chain: C: avrm-a; crystal structure of the flax-rust effector avrm-a
c4jd9B_ protein binding Chain: B: 14.5 kda salivary protein; contact pathway inhibitor from a sand fly
c4mvtC_ ligase Chain: C: e3 sumo-protein ligase pias3; crystal structure of sumo e3 ligase pias3
c4je3A_ cell cycle Chain: A: central kinetochore subunit iml3; an iml3-chl4 heterodimer links the core centromere to factors required2 for accurate chromosome segregation
c4mzwA_ transferase Chain: A: glutathione s-transferase; crystal structure of nu-class glutathione transferase yghu from2 streptococcus sanguinis sk36, complex with glutathione disulfide,3 target efi-507286
c4jwjA_ transferase Chain: A: trna (guanine(9)-n1)-methyltransferase; crystal structure of sctrm10(84)-sah complex
c4hr0A_ oxidoreductase Chain: A: ribonuleotide reductase small subunit; r2-like ligand-binding oxidase with aerobically reconstituted metal2 cofactor
c4k0eA_ transport protein Chain: A: heavy metal cation tricomponent efflux pump znea(czca- x-ray crystal structure of a heavy metal efflux pump, crystal form ii
c4jwhB_ transferase Chain: B: trna (guanine(9)-n1)-methyltransferase; crystal structure of sptrm10(full length)-sah complex
c4ldsB_ transport protein, membrane protein Chain: B: bicyclomycin resistance protein tcab; the inward-facing structure of the glucose transporter from2 staphylococcus epidermidis
c4ljoA_ ligase Chain: A: e3 ubiquitin-protein ligase rnf31; structure of an active ligase (hoip)/ubiquitin transfer complex
c4n3oB_ transferase Chain: B: putative d-glycero-d-manno-heptose 7-phosphate kinase; 2.4 angstrom resolution crystal structure of putative sugar kinase2 from campylobacter jejuni.
c4mh4B_ protein binding Chain: B: osmc-like protein; crystal structure of osmc-like protein from burkholderia cenocepacia2 j2315
c4m67A_ signaling protein Chain: A: mixed lineage kinase domain-like protein; crystal structure of the human mlkl kinase-like domain
c4kynB_ transport protein Chain: B: odorant binding protein-8; crystal structure of odorant binding protein 48 from anopheles gambiae2 at 3.3 angstrom resolution
c4hi0F_ metal binding protein Chain: F: urease accessory protein ureg; crystal structure of helicobacter pylori urease accessory protein2 uref/h/g complex
c4by6B_ transcription Chain: B: general negative regulator of transcription subunit 2; yeast not1-not2-not5 complex
c4lsdF_ hormone Chain: F: fibronectin type iii domain-containing protein 5; myokine structure
c4lhdB_ oxidoreductase Chain: B: glycine dehydrogenase [decarboxylating]; crystal structure of synechocystis sp. pcc 6803 glycine decarboxylase2 (p-protein), holo form with pyridoxal-5'-phosphate and glycine,3 closed flexible loop
c4n0vB_ transferase Chain: B: glutathione s-transferase, n-terminal domain; crystal structure of a glutathione s-transferase domain-containing2 protein (marinobacter aquaeolei vt8), target efi-507332
c4mhbF_ oxidoreductase Chain: F: putative aldo/keto reductase; structure of a putative reductase from yersinia pestis
c4k2bA_ transferase Chain: A: ntd biosynthesis operon protein ntda; crystal structure of ntda from bacillus subtilis in complex with the2 internal aldimine
c4mxtA_ protein transport Chain: A: uncharacterized protein; crystal structure of a hypothetical protein (bacuni_04723) from2 bacteroides uniformis atcc 8492 at 1.40 a resolution
c4mixA_ transferase Chain: A: putative insecticidal toxin; patoxg glycosyltransferase
c4c8bB_ transferase Chain: B: receptor-interacting serine/threonine-protein kinase 2; structure of the kinase domain of human ripk2 in complex2 with ponatinib
c4e0fB_ transferase Chain: B: riboflavin synthase subunit alpha; crystallographic structure of trimeric riboflavin synthase from2 brucella abortus in complex with riboflavin
c4c92G_ transcription Chain: G: u6 snrna-associated sm-like protein lsm7; crystal structure of the yeast lsm1-7 complex
c4c92D_ transcription Chain: D: u6 snrna-associated sm-like protein lsm4; crystal structure of the yeast lsm1-7 complex
c2m99A_ hydrolase inhibitor Chain: A: protease inhibitor naci; solution structure of a chymotrypsin inhibitor from the taiwan cobra
c4n03A_ transport protein Chain: A: abc-type branched-chain amino acid transport systems fatty acid abc transporter substrate-binding protein from2 thermomonospora curvata
c4je3B_ cell cycle Chain: B: central kinetochore subunit chl4; an iml3-chl4 heterodimer links the core centromere to factors required2 for accurate chromosome segregation
c4myrD_ transcription Chain: D: cpae2 pilus assembly protein; crystal structure of a putative cpae2 pilus assembly protein (cpae2)2 from sinorhizobium meliloti 1021 at 2.72 a resolution (psi community3 target, shapiro)
c3wbdA_ immune system Chain: A: single chain fv fragment of mab735; crystal structure of anti-polysialic acid antibody single chain fv2 fragment (mab735) complexed with octasialic acid
c4lp5A_ signaling protein Chain: A: advanced glycosylation end product-specific receptor; crystal structure of the full-length human rage extracellular domain2 (vc1c2 fragment)
c4by6A_ transcription Chain: A: general negative regulator of transcription subunit 1; yeast not1-not2-not5 complex
c4ijyA_ unknown function Chain: A: cofj; crystal structure of the etec secreted protein cofj
c4c92B_ transcription Chain: B: u6 snrna-associated sm-like protein lsm2; crystal structure of the yeast lsm1-7 complex
c4n18A_ oxidoreductase Chain: A: d-isomer specific 2-hydroxyacid dehydrogenase family crystal structure of d-isomer specific 2-hydroxyacid dehydrogenase2 family protein from klebsiella pneumoniae 342
c2mb9A_ signaling protein Chain: A: b-cell lymphoma/leukemia 10; human bcl10 card
c4k0eC_ transport protein Chain: C: heavy metal cation tricomponent efflux pump znea(czca- x-ray crystal structure of a heavy metal efflux pump, crystal form ii
c4m0hB_ signaling protein Chain: B: conserved hypothetical protein, putative anti-sigma factor; crystal structure of a conserved hypothetical protein, putative anti-2 sigma factor (bdi_1681) from parabacteroides distasonis atcc 8503 at3 2.50 a resolution
c4c8qE_ transcription Chain: E: u6 snrna-associated sm-like protein lsm5; crystal structure of the yeast lsm1-7-pat1 complex
c4mgpA_ antimicrobial protein Chain: A: magainin 2 derivative; structure of racemic ala-(8,13,18) magainin 2
c4mx6A_ transport protein Chain: A: trap-type c4-dicarboxylate:h+ symport system substrate- crystal structure of a trap periplasmic solute binding protein from2 shewanella oneidensis (so_3134), target efi-510275, with bound3 succinate
c2m1jA_ unknown function Chain: A: prion-like protein doppel; ovine doppel signal peptide (1-30)
c4m66B_ transferase Chain: B: receptor-interacting serine/threonine-protein kinase 3; crystal structure of the mouse rip3 kinase domain
c4mjgB_ structural genomics, unknown function Chain: B: hypothetical protein; crystal structure of a hypothetical protein (actodo_00621) from2 actinomyces odontolyticus atcc 17982 at 2.65 a resolution
c4c8qH_ transcription Chain: H: dna topoisomerase 2-associated protein pat1; crystal structure of the yeast lsm1-7-pat1 complex
c4c8qA_ transcription Chain: A: sm-like protein lsm1; crystal structure of the yeast lsm1-7-pat1 complex
c4c92A_ transcription Chain: A: sm-like protein lsm1; crystal structure of the yeast lsm1-7 complex
c3zj0A_ transferase Chain: A: acetyltransferase; the human o-glcnacase c-terminal domain is a pseudo histone2 acetyltransferase
c4h25C_ immune system Chain: C: peptide; tcr interaction with peptide mimics of nickel offers structure2 insights to nickel contact allergy
c4c8dA_ oxidoreductase Chain: A: lysine-specific demethylase 3b; crystal structure of jmjc domain of human histone 3 lysine-2 specific demethylase 3b (kdm3b)
c4my4A_ isomerase Chain: A: 2,3-bisphosphoglycerate-independent phosphoglycerate crystal structure of phosphoglycerate mutase from staphylococcus2 aureus.
c4h25F_ immune system Chain: F: peptide; tcr interaction with peptide mimics of nickel offers structure2 insights to nickel contact allergy


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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