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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Oct 12

Fold library idPDB HeaderMoleculeTitle
c4iozC_ signaling protein Chain: C: stromal interaction molecule 1; the structure of cc1-ih in human stim1.
c4my3A_ transferase Chain: A: gcn5-related n-acetyltransferase; crystal structure of gcn5-related n-acetyltransferase from kribbella2 flavida
c4lhzE_ protein transport Chain: E: rab-3a-interacting protein; crystal structure of gtp-bound rab8:rabin8
c4bmcA_ replication Chain: A: s-m checkpoint control protein rad4; crystal structure of s.pombe rad4 brct1,2
c2mcqA_ unknown function Chain: A: uncharacterized protein rp812; nmr structure of a bola-like hypothetical protein rp812 from2 rickettsia prowazekii, seattle structural genomics center for3 infectious disease (ssgcid)
c4jhoA_ hydrolase Chain: A: beta-mannosidase/beta-glucosidase; structural analysis and insights into glycon specificity of the rice2 gh1 os7bglu26 beta-d-mannosidase
c4c0fC_ gene regulation Chain: C: ccr4-not transcription complex subunit 2; structure of the not-box domain of human cnot2
c4f7bA_ cell adhesion Chain: A: lysosome membrane protein 2; structure of the lysosomal domain of limp-2
c4m8rA_ structural genomics, unknown function Chain: A: hypothetical protein; crystal structure of a hypothetical protein (baccac_01631) from2 bacteroides caccae atcc 43185 at 2.50 a resolution
c4bxdB_ hydrolase/peptide Chain: B: ampdh3; crystal structure of ampdh3 from pseudomonas aeruginosa in2 complex with tetrasaccharide pentapeptide
c4m8nB_ signaling protein Chain: B: plexinc1 intracellular region; crystal structure of plexinc1/rap1b complex
c4mqdB_ hydrolase inhibitor Chain: B: dna-entry nuclease inhibitor; crystal structure of comj, inhibitor of the dna degrading activity of2 nuca, from bacillus subtilis
c4logB_ transcription Chain: B: maltose abc transporter periplasmic protein and nr2e3 the crystal structure of the orphan nuclear receptor pnr ligand2 binding domain fused with mbp
c3zcjD_ protein binding Chain: D: cagl; crystal structure of helicobacter pylori t4ss protein cagl in a2 tetragonal crystal form with a helical rgd-motif (6 mol per asu)
c4bt8B_ oxidoreductase Chain: B: prolyl 4-hydroxylase subunit alpha-1; crystal structure of the apo form of n-terminal domain and2 peptide substrate binding domain of prolyl-4 hydroxylase3 type i from human
c4mp4B_ transferase Chain: B: glutathione s-transferase; crystal structure of a glutathione transferase family member from2 acinetobacter baumannii, target efi-501785, apo structure
c4c58B_ transferase Chain: B: nanobody; structure of gak kinase in complex with nanobody (nbgak_4)
c4c38I_ transferase/inhibitor Chain: I: camp-dependent protein kinase inhibitor peptide; pka-s6k1 chimera with compound 21e (cct239066) bound
c4mzuG_ isomerase, transferase Chain: G: wxcm-like protein; crystal structure of fdtd, a bifunctional ketoisomerase/n-2 acetyltransferase from shewanella denitrificans
c4mwaA_ oxidoreductase Chain: A: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; 1.85 angstrom crystal structure of gcpe protein from bacillus2 anthracis
c4k3hG_ immune system/inhibitor Chain: G: immunoglobulin lambda variable domain l5(l89s); immunoglobulin lambda variable domain l5(l89s) fluorogen activationg2 protein in complex with malachite green
c4k17B_ lipid binding protein Chain: B: leucine-rich repeat-containing protein 16a; crystal structure of mouse carmil residues 1-668
c4c57C_ transferase Chain: C: nanobody; structure of gak kinase in complex with a nanobody
c4c0gB_ gene regulation Chain: B: ccr4-not transcription complex subunit 3; structure of the not-box domain of human cnot3
c2lznA_ transferase Chain: A: dna primase; solution structure of s. aureus primase c-terminal domain
c4lmoB_ rna binding protein Chain: B: telomerase reverse transcriptase; structure of a vertebrate rna binding domain of telomerase (trbd)
c2me4A_ membrane protein Chain: A: envelope glycoprotein gp160; hiv-1 gp41 clade c membrane proximal external region peptide in dpc2 micelle
c4jj0B_ electron transport Chain: B: mamp; crystal structure of mamp
c4m9rB_ hydrolase Chain: B: cell death protein 3; crystal structure of ced-3
c2lxxA_ protein binding Chain: A: actin-depolymerizing factor 2, isoform c; solution struture of cofilin like unc-60b protein from caenorhabditis2 elegans
c4lu0A_ transferase Chain: A: 2-dehydro-3-deoxyphosphooctonate aldolase; crystal structure of 2-keto-3-deoxy-d-manno-octulosonate-8-phosphate2 synthase from pseudomonas aeruginosa.
c4c37I_ transferase/inhibitor Chain: I: camp-dependent protein kinase inhibitor alpha; pka-s6k1 chimera with compound 21a (cct196539) bound
c4modB_ viral protein Chain: B: hr1 of s protein, linker, hr2 of s protein; structure of the mers-cov fusion core
c4j5mA_ protein transport Chain: A: unconventional myosin-vb; structure of the cargo binding domain from human myosin vb
c4c0lA_ hydrolase Chain: A: mitochondrial rho gtpase; crystal structure of drosophila miro ef hand and cgtpase domains2 bound to one magnesium ion and mg:gdp (mggdp-miros)
c4mudA_ oxidoreductase Chain: A: ring oxydation complex/ phenylacetic acid degradation crystal structure of a ring oxydation complex/ phenylacetic acid2 degradation-like protein (sso1313) from sulfolobus solfataricus p2 at3 2.43 a resolution
c2me1A_ membrane protein Chain: A: gp41; hiv-1 gp41 clade b double alanine mutant membrane proximal external2 region peptide in dpc micelle
c4c7lA_ hydrolase Chain: A: hemagglutinin-esterase; crystal structure of mouse hepatitis virus strain s2 hemagglutinin-esterase
c4c0eD_ gene regulation Chain: D: not1; structure of the not1 superfamily homology domain from2 chaetomium thermophilum
c2lzlB_ transferase Chain: B: fibroblast growth factor receptor 3; fgfr3tm
c4b60B_ cell adhesion Chain: B: fibronectin-binding protein a; structure of rfnbpa(189-505) in complex with fibrinogen2 gamma chain c-terminal peptide
c4c0dA_ gene regulation Chain: A: ccr4-not transcription complex subunit 1; structure of the not module of the human ccr4-not complex2 (cnot1-cnot2-cnot3)
c4mjmD_ oxidoreductase Chain: D: inosine-5'-monophosphate dehydrogenase; crystal structure of the inosine 5'-monophosphate dehydrogenase, with2 a short internal deletion of cbs domain from bacillus anthracis str.3 ames
c4l8tA_ protein transport Chain: A: unconventional myosin-vc; structure of the cargo binding domain from human myosin vc
c2mbhB_ transcription Chain: B: krueppel-like factor 1; nmr structure of eklf(22-40)/ubiquitin complex
c4c0dC_ gene regulation Chain: C: ccr4-not transcription complex subunit 3; structure of the not module of the human ccr4-not complex2 (cnot1-cnot2-cnot3)
c4mu9B_ hydrolase Chain: B: glycoside hydrolase family 73; crystal structure of a putative glycosylhydrolase (bt_3782) from2 bacteroides thetaiotaomicron vpi-5482 at 1.89 a resolution
c2me2A_ membrane protein Chain: A: envelope glycoprotein gp160; hiv-1 gp41 clade c membrane proximal external region peptide in dpc2 micelle
c4lj0B_ rna binding protein Chain: B: nab2; nab2 zn fingers complexed with polyadenosine
c4bmdA_ replication Chain: A: s-m checkpoint control protein rad4; crystal structure of s.pombe rad4 brct3,4
c4heoA_ viral protein Chain: A: phosphoprotein; hendra virus phosphoprotein c terminal domain
c4logA_ transcription Chain: A: maltose abc transporter periplasmic protein and nr2e3 the crystal structure of the orphan nuclear receptor pnr ligand2 binding domain fused with mbp
c4c0dB_ gene regulation Chain: B: ccr4-not transcription complex subunit 2; structure of the not module of the human ccr4-not complex2 (cnot1-cnot2-cnot3)
c2me3A_ membrane protein Chain: A: envelope glycoprotein gp160; hiv-1 gp41 clade c membrane proximal external region peptide in dpc2 micelle
c4kt5C_ transcription regulator Chain: C: grla; structure of grlr-grla complex
c4hguA_ hydrolase inhibitor Chain: A: silk protease inhibitor 2; crystal structure of galleria mellonella silk protease inhibitor 2
c4c36I_ transferase/inhibitor Chain: I: camp-dependent protein kinase inhibitor alpha; pka-s6k1 chimera with compound 15e (cct147581) bound
c4kl0A_ calcium binding protein Chain: A: putative uncharacterized protein; crystal structure of the effector protein xoo4466


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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